The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_014315	Nitrosococcus watsonii C-113, complete sequence	3328570	1128806	1139366	3328570		Aeromonas_phage(14.29%)	9	NA	NA
WP_013220109.1|1128806_1130060_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	50.6	1.8e-97
WP_013220110.1|1130076_1130601_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_041350500.1|1130763_1131861_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.8	2.7e-49
WP_013220112.1|1131919_1132576_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	37.6	3.5e-28
WP_013220113.1|1132582_1133689_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2I2L4Y7	Orpheovirus	32.2	7.5e-39
WP_041350900.1|1133678_1134287_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.5	1.5e-25
WP_013220115.1|1134321_1136775_-	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	38.7	1.0e-16
WP_013220116.1|1136867_1137428_-	Uma2 family endonuclease	NA	NA	NA	NA	NA
WP_013220117.1|1137737_1139366_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	32.6	2.6e-11
>prophage 2
NC_014315	Nitrosococcus watsonii C-113, complete sequence	3328570	1668365	1746026	3328570	tRNA,holin,transposase,protease	Phage_Gifsy-1(20.0%)	59	NA	NA
WP_041350577.1|1668365_1669535_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0R8V9X2	Thermobifida_phage	42.8	1.8e-75
WP_013220520.1|1669907_1674569_+	glutamate synthase large subunit	NA	NA	NA	NA	NA
WP_013220521.1|1674561_1676004_+	glutamate synthase subunit beta	NA	NA	NA	NA	NA
WP_013220522.1|1676173_1676530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013220523.1|1676755_1680457_+	response regulator	NA	Q8QNA2	Ectocarpus_siliculosus_virus	36.4	6.4e-10
WP_013220524.1|1680552_1681617_+	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA	NA
WP_013220525.1|1681728_1682613_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	76.0	2.0e-111
WP_041350936.1|1682657_1683188_-	DUF2141 domain-containing protein	NA	NA	NA	NA	NA
WP_013220527.1|1683529_1684873_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_041350581.1|1684993_1686175_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	44.1	5.5e-80
WP_013220528.1|1686388_1687372_-	DUF3618 domain-containing protein	NA	NA	NA	NA	NA
WP_013220529.1|1687358_1687814_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_013220530.1|1687813_1688449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013220531.1|1688807_1689353_-	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_013220532.1|1689547_1690849_-	DUF389 domain-containing protein	NA	NA	NA	NA	NA
WP_013220534.1|1691399_1692065_+	flavodoxin reductase	NA	NA	NA	NA	NA
WP_013220535.1|1692137_1693781_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
WP_013220536.1|1693814_1694624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013220537.1|1694688_1698201_-	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_013220538.1|1698805_1699753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041350937.1|1699844_1700033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041350583.1|1700029_1700215_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_013220540.1|1700695_1701406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013220541.1|1701472_1701715_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_013220543.1|1702413_1704765_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_013220545.1|1705121_1705700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013220546.1|1705696_1706416_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_013220547.1|1706916_1708047_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_013220548.1|1708462_1709932_-	L-lactate permease	NA	NA	NA	NA	NA
WP_013220549.1|1710403_1710946_-	DUF488 domain-containing protein	NA	NA	NA	NA	NA
WP_041350584.1|1711084_1712476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013220551.1|1712465_1713239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157679838.1|1713655_1713883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013220552.1|1714280_1715768_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_013220554.1|1716239_1716758_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_157679840.1|1716985_1717438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157679842.1|1717377_1717896_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_013220555.1|1718596_1719088_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_013220556.1|1719183_1720485_+	diaminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA	NA
WP_013220557.1|1720713_1721622_+	ectoine hydroxylase	NA	NA	NA	NA	NA
WP_013220558.1|1721782_1723153_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	36.1	1.4e-63
WP_013220559.1|1723392_1723791_+	conjugal transfer protein TraR	NA	NA	NA	NA	NA
WP_013220560.1|1725316_1726366_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_013220561.1|1726573_1728745_+	amylo-alpha-1,6-glucosidase	NA	NA	NA	NA	NA
WP_013220562.1|1728802_1730389_-	glucan biosynthesis protein D	NA	NA	NA	NA	NA
WP_013220563.1|1730720_1732301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013220564.1|1732976_1733714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049773060.1|1733785_1736110_-	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	29.5	2.4e-15
WP_083781433.1|1736496_1736670_+	helix-turn-helix domain-containing protein	NA	Q9G0F2	Phage_Gifsy-1	64.0	7.8e-12
WP_013220566.1|1736929_1737424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013220567.1|1737440_1738346_+	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	33.8	9.4e-40
WP_013220568.1|1738349_1739399_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_013220569.1|1739436_1740774_-	MFS transporter	NA	NA	NA	NA	NA
WP_013220570.1|1740842_1741502_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	48.7	1.3e-30
WP_013220571.1|1741699_1742809_-	ferrochelatase	NA	NA	NA	NA	NA
WP_013220572.1|1743066_1743558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013220573.1|1743666_1744446_+	CAP domain-containing protein	NA	NA	NA	NA	NA
WP_157679844.1|1745153_1745579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157679847.1|1745594_1746026_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	M4I0N8	Staphylococcus_phage	52.3	2.2e-23
>prophage 3
NC_014315	Nitrosococcus watsonii C-113, complete sequence	3328570	2533708	2541947	3328570		Escherichia_phage(28.57%)	7	NA	NA
WP_013221230.1|2533708_2534791_+	aspartate carbamoyltransferase	NA	Q84489	Paramecium_bursaria_Chlorella_virus	31.6	2.7e-33
WP_013221231.1|2534926_2536939_+	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y1H0	Organic_Lake_phycodnavirus	27.6	2.8e-28
WP_013221232.1|2537068_2537953_-	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	32.8	1.6e-28
WP_013221233.1|2537949_2538495_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	51.4	3.1e-46
WP_013221234.1|2538513_2539392_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	59.8	1.9e-93
WP_013221235.1|2539384_2540461_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	49.8	4.8e-91
WP_013221236.1|2540474_2541947_-	glucose-6-phosphate dehydrogenase	NA	A0A1D8KIX9	Synechococcus_phage	39.0	1.0e-83
>prophage 4
NC_014315	Nitrosococcus watsonii C-113, complete sequence	3328570	3070496	3084099	3328570	transposase	Vibrio_phage(16.67%)	10	NA	NA
WP_013221694.1|3070496_3071561_+	type I-F CRISPR-associated protein Csy3	NA	A0A2I7RCY7	Vibrio_phage	32.5	2.0e-33
WP_013221695.1|3071575_3072181_+	type I-F CRISPR-associated endoribonuclease Cas6/Csy4	NA	NA	NA	NA	NA
WP_013221697.1|3073966_3074362_+|transposase	IS200/IS605 family transposase	transposase	A0A0H3UZM0	Geobacillus_virus	48.8	5.4e-32
WP_013221698.1|3074362_3075484_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A191SB13	Nostoc_phage	35.2	3.5e-36
WP_013221699.1|3075586_3076006_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA	NA
WP_041350793.1|3076353_3077034_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0R8V9X2	Thermobifida_phage	42.4	5.7e-05
WP_013221701.1|3077154_3080148_+	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	31.3	1.0e-18
WP_013221702.1|3080201_3081572_-	DNA repair protein RadA	NA	NA	NA	NA	NA
WP_013221703.1|3081577_3082648_-	alanine racemase	NA	NA	NA	NA	NA
WP_013221704.1|3082677_3084099_-	replicative DNA helicase	NA	O80281	Escherichia_phage	56.6	5.3e-138
