The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_014328	Clostridium ljungdahlii DSM 13528, complete sequence	4630065	351367	381439	4630065	head,tail,terminase,portal,protease,capsid	Erysipelothrix_phage(42.86%)	33	NA	NA
WP_041705000.1|351367_351709_+	hypothetical protein	NA	A0A2K5B2A7	Erysipelothrix_phage	63.7	7.9e-24
WP_013237019.1|351701_352865_+	DUF2800 domain-containing protein	NA	A0A2K5B2A8	Erysipelothrix_phage	76.5	7.1e-173
WP_013237020.1|352842_353391_+	DUF2815 family protein	NA	A0A2K5B2A9	Erysipelothrix_phage	89.4	6.0e-90
WP_013237021.1|353468_355418_+	DNA polymerase	NA	A0A2K5B2B0	Erysipelothrix_phage	67.6	1.2e-268
WP_013237022.1|355533_356307_+	phage repressor protein/antirepressor Ant	NA	A0A2H4PQV4	Staphylococcus_phage	56.1	1.0e-79
WP_013237023.1|356308_356743_+	hypothetical protein	NA	A0A2K5B270	Erysipelothrix_phage	63.9	8.2e-50
WP_013237024.1|356739_359103_+	phage-like protein	NA	A0A1W6JQ82	Corynebacterium_phage	50.7	1.3e-234
WP_013237025.1|359323_359605_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	71.1	6.1e-30
WP_013237026.1|359585_360947_+	DEAD/DEAH box helicase	NA	A0A2K5B273	Erysipelothrix_phage	75.4	9.8e-174
WP_013237027.1|360939_361161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013237028.1|361162_361591_+	hypothetical protein	NA	A0A2K5B275	Erysipelothrix_phage	34.5	4.2e-14
WP_013237029.1|361705_362083_+	HNH endonuclease	NA	Q38456	Bacillus_phage	50.4	3.4e-28
WP_013237030.1|362359_363604_+	DNA modification methylase	NA	A0A2I4R670	Erysipelothrix_phage	59.9	8.7e-145
WP_013237031.1|363672_363984_+	hypothetical protein	NA	A0A2K5B282	Erysipelothrix_phage	61.8	5.2e-30
WP_013237032.1|364223_364940_+	hypothetical protein	NA	A0A2K5B280	Erysipelothrix_phage	31.7	5.6e-19
WP_013237033.1|365098_365365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013237034.1|365412_365883_+|terminase	phage terminase small subunit P27 family	terminase	Q6DMU4	Streptococcus_phage	70.5	4.0e-58
WP_013237035.1|365885_367436_+|terminase	terminase large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	72.3	8.7e-227
WP_013237036.1|367447_368728_+|portal	phage portal protein	portal	Q8W629	Enterobacteria_phage	39.6	1.4e-68
WP_013237037.1|368720_369560_+|protease	Clp protease ClpP	protease	A0A0C5AEN1	Bacteriophage	52.7	4.2e-58
WP_013237038.1|369556_370840_+|capsid	phage major capsid protein	capsid	A0A1B1IQC5	uncultured_Mediterranean_phage	33.7	7.6e-51
WP_013237039.1|371005_371488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013237041.1|371607_372060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013237042.1|372127_372700_+|head,tail	phage head-tail connector protein	head,tail	C7BGH1	Burkholderia_phage	29.6	1.4e-09
WP_013237043.1|372696_373023_+|head	phage head closure protein	head	A6M954	Geobacillus_virus	40.8	1.6e-13
WP_013237044.1|373015_373396_+	HK97 gp10 family phage protein	NA	W8CZ44	Bacillus_phage	32.8	4.4e-15
WP_013237045.1|373392_373716_+	hypothetical protein	NA	A0A0K2CZA4	Paenibacillus_phage	45.5	1.4e-17
WP_013237046.1|373733_374564_+	phage protein	NA	A0A2H4J8F3	uncultured_Caudovirales_phage	43.5	2.4e-29
WP_013237047.1|374610_374895_+	hypothetical protein	NA	A0A288WGA9	Bacillus_phage	37.5	6.2e-06
WP_013237048.1|375096_377862_+|tail	phage tail tape measure protein	tail	Q9G097	Lactococcus_phage	60.1	3.1e-86
WP_013237049.1|377863_378571_+|tail	phage tail family protein	tail	Q8W5Z6	Listeria_phage	28.8	2.0e-16
WP_013237050.1|378649_379477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013237051.1|379585_381439_+|tail	phage tail protein	tail	A0A1B1P7P0	Bacillus_phage	34.6	9.6e-39
>prophage 2
NC_014328	Clostridium ljungdahlii DSM 13528, complete sequence	4630065	576494	584950	4630065	transposase	Escherichia_phage(42.86%)	9	NA	NA
WP_013237213.1|576494_577874_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	34.9	3.1e-66
WP_013237214.1|577933_578989_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D8EQC0	Escherichia_phage	44.0	3.6e-75
WP_013237215.1|579127_580006_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	A0A291LA53	Escherichia_phage	58.2	4.2e-93
WP_013237216.1|580026_580914_+	dTDP-4-dehydrorhamnose reductase	NA	I7HXC9	Enterobacteria_phage	35.8	1.6e-36
WP_041705260.1|581099_581648_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	54.2	5.7e-48
WP_013237218.1|581834_582038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148222365.1|582237_582921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013237220.1|582964_584506_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	36.2	1.9e-72
WP_013237221.1|584593_584950_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	46.7	7.2e-20
>prophage 3
NC_014328	Clostridium ljungdahlii DSM 13528, complete sequence	4630065	1226303	1233632	4630065	tRNA	uncultured_Mediterranean_phage(50.0%)	8	NA	NA
WP_013237791.1|1226303_1227182_+	tyrosine recombinase XerD	NA	A0A1B1IQT7	uncultured_Mediterranean_phage	26.3	4.7e-12
WP_029170125.1|1227316_1228528_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	32.0	7.4e-32
WP_013237793.1|1228686_1229853_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A219YCT8	Aeromonas_phage	35.9	6.1e-23
WP_013237794.1|1229853_1230609_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	28.2	4.1e-12
WP_013237795.1|1230598_1231174_+	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	36.0	6.9e-20
WP_013237796.1|1231228_1231669_-	GerW family sporulation protein	NA	NA	NA	NA	NA
WP_013237797.1|1231736_1232237_-	DUF2953 domain-containing protein	NA	NA	NA	NA	NA
WP_013237798.1|1232528_1233632_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	29.9	1.2e-07
>prophage 4
NC_014328	Clostridium ljungdahlii DSM 13528, complete sequence	4630065	3431565	3479425	4630065	tail,terminase,portal,capsid,integrase	Clostridium_phage(72.09%)	67	3462380:3462395	3479609:3479624
WP_013239739.1|3431565_3432327_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B4XWW6	Tenacibaculum_phage	30.6	1.3e-05
WP_013239740.1|3432344_3432662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239741.1|3432709_3433363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239742.1|3433378_3434464_-	hypothetical protein	NA	A0A0A7RU66	Clostridium_phage	54.3	4.1e-106
WP_013239743.1|3434477_3435473_-	hypothetical protein	NA	A0A0A7RW91	Clostridium_phage	63.0	2.6e-123
WP_013239744.1|3435484_3435748_-	hypothetical protein	NA	A0A0A7S0T0	Clostridium_phage	60.2	3.0e-23
WP_148222385.1|3435753_3436197_-	hypothetical protein	NA	A0A0A7RU09	Clostridium_phage	71.9	6.0e-64
WP_013239746.1|3436494_3437688_-	hypothetical protein	NA	A0A0A7RU09	Clostridium_phage	44.0	6.2e-15
WP_041705171.1|3437699_3438947_-	hypothetical protein	NA	A0A0A7RU28	Clostridium_phage	71.7	3.3e-168
WP_013239748.1|3438953_3439964_-	hypothetical protein	NA	A0A0A7RU61	Clostridium_phage	53.3	1.3e-98
WP_013239749.1|3439960_3440524_-	hypothetical protein	NA	A0A0A7RW86	Clostridium_phage	63.0	2.7e-61
WP_013239750.1|3440535_3440880_-	hypothetical protein	NA	A0A0A7S0S4	Clostridium_phage	47.2	2.5e-17
WP_148222403.1|3440882_3441995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239752.1|3441984_3442419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239753.1|3442432_3444628_-|tail	phage tail tape measure protein	tail	D9ZNE6	Clostridium_phage	53.5	1.0e-111
WP_013239754.1|3444709_3445321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041705172.1|3445417_3445630_-	hypothetical protein	NA	A0A0A7RW80	Clostridium_phage	47.1	5.1e-13
WP_013239755.1|3445577_3446033_-	hypothetical protein	NA	A0A0A7S0S0	Clostridium_phage	41.4	4.4e-22
WP_148222404.1|3446045_3446948_-	hypothetical protein	NA	A0A0A7RTZ9	Clostridium_phage	42.9	1.9e-56
WP_013239757.1|3446965_3447397_-	hypothetical protein	NA	A0A0A7RU17	Clostridium_phage	42.8	4.3e-27
WP_013239758.1|3447405_3447840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239759.1|3447845_3448220_-	hypothetical protein	NA	A0A0A7RW73	Clostridium_phage	47.0	3.4e-20
WP_013239760.1|3448216_3448492_-	hypothetical protein	NA	A0A0A7S0R4	Clostridium_phage	56.0	7.5e-25
WP_013239761.1|3448506_3448728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239762.1|3448778_3449816_-|capsid	major capsid protein	capsid	D9ZND6	Clostridium_phage	67.4	5.6e-129
WP_013239763.1|3449832_3450165_-	hypothetical protein	NA	D9ZND5	Clostridium_phage	58.2	3.0e-28
WP_041705174.1|3450177_3450792_-	phage scaffolding protein	NA	A0A0A7RW68	Clostridium_phage	41.6	7.1e-31
WP_013239765.1|3450838_3451123_-	hypothetical protein	NA	A0A0K2CZ01	Paenibacillus_phage	37.9	3.9e-08
WP_013239766.1|3451173_3451371_-	DUF4926 domain-containing protein	NA	NA	NA	NA	NA
WP_013239767.1|3451375_3452734_-	hypothetical protein	NA	A0A0A7RU06	Clostridium_phage	47.4	1.9e-84
WP_041705176.1|3452726_3454208_-|portal	phage portal protein	portal	D9ZNC8	Clostridium_phage	57.1	7.4e-159
WP_013239770.1|3455512_3456106_-	HNH endonuclease	NA	E5DV63	Deep-sea_thermophilic_phage	48.5	3.8e-21
WP_013239771.1|3456211_3457036_-|terminase	terminase small subunit	terminase	A0A0A7AR21	Bacillus_phage	42.8	6.3e-51
WP_013239772.1|3457112_3458009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239773.1|3458111_3458321_+	KTSC domain-containing protein	NA	NA	NA	NA	NA
WP_013239774.1|3458322_3458466_-	BC1881 family protein	NA	NA	NA	NA	NA
WP_013239775.1|3458456_3458657_-	hypothetical protein	NA	A0A0A7S0Q0	Clostridium_phage	56.9	3.2e-09
WP_013239776.1|3458758_3458941_+	type II toxin-antitoxin system HicA family toxin	NA	A0A0A7RWW9	Clostridium_phage	56.7	4.5e-10
WP_013239777.1|3458992_3459394_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0A7S1E5	Clostridium_phage	69.2	4.9e-49
WP_013239778.1|3459574_3460369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239779.1|3460398_3461577_-	SPOR domain-containing protein	NA	A0A2H4J270	uncultured_Caudovirales_phage	32.8	1.3e-12
WP_013239780.1|3461795_3461996_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
3462380:3462395	attL	ATATATAATATTAAAT	NA	NA	NA	NA
WP_013239781.1|3462610_3463276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239782.1|3463301_3464507_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	69.2	2.2e-153
WP_013239783.1|3464533_3465307_-	hypothetical protein	NA	A0A0A7RTW7	Clostridium_phage	39.5	1.3e-37
WP_013239784.1|3465402_3465939_-	hypothetical protein	NA	A0A0A7RVS1	Clostridium_phage	50.6	2.1e-39
WP_063562579.1|3465963_3466212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239785.1|3466186_3466330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239786.1|3466599_3466815_+	helix-turn-helix transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	68.7	4.2e-15
WP_013239787.1|3466817_3467159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013239788.1|3467611_3468304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239789.1|3468553_3469195_-	hypothetical protein	NA	A0A0A7RW43	Clostridium_phage	62.2	3.1e-69
WP_013239790.1|3469187_3469604_-	DUF1064 domain-containing protein	NA	A0A0A7RTV9	Clostridium_phage	58.4	5.3e-38
WP_013239791.1|3469750_3470161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239792.1|3470204_3471161_-	phage replisome organizer N-terminal domain-containing protein	NA	Q7Y4K5	Streptococcus_phage	38.8	5.1e-44
WP_013239793.1|3471173_3471902_-	MBL fold metallo-hydrolase	NA	A0A1L2JY21	Aeribacillus_phage	50.6	1.5e-64
WP_013239794.1|3471901_3472855_-	recombinase RecT	NA	A0A1L2JY28	Aeribacillus_phage	46.8	1.9e-59
WP_013239795.1|3472881_3474867_-	AAA family ATPase	NA	A0A1L2K2K3	Aeribacillus_phage	35.9	7.0e-88
WP_013239796.1|3474921_3475155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148222405.1|3475170_3475350_-	hypothetical protein	NA	A0A0A7RTR9	Clostridium_phage	46.4	1.9e-05
WP_013239798.1|3475368_3475581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239799.1|3475573_3475972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013239800.1|3476021_3476303_-	excisionase family DNA-binding protein	NA	NA	NA	NA	NA
WP_013239801.1|3476280_3476799_-	hypothetical protein	NA	A0A2K9V3J3	Faecalibacterium_phage	43.6	3.7e-25
WP_013239802.1|3476858_3477089_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013239804.1|3477659_3478118_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RVV2	Clostridium_phage	53.3	1.3e-40
WP_013239805.1|3478243_3479425_+|integrase	site-specific integrase	integrase	A0A1C8E994	Bacillus_phage	30.1	3.8e-25
3479609:3479624	attR	ATTTAATATTATATAT	NA	NA	NA	NA
>prophage 5
NC_014328	Clostridium ljungdahlii DSM 13528, complete sequence	4630065	3970843	3991532	4630065	integrase	Clostridium_phage(44.44%)	27	3958731:3958774	3991622:3991665
3958731:3958774	attL	TGGTGCACCCAGGGAGATTCGAACTCCCGGCCTCTGGATTCGAA	NA	NA	NA	NA
WP_013240270.1|3970843_3972805_-	C40 family peptidase	NA	A0A0M4QX01	Salmonella_phage	25.5	1.5e-13
WP_156496159.1|3972817_3972976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013240271.1|3972997_3973618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013240272.1|3973787_3974192_-	helix-turn-helix domain-containing protein	NA	A0A2H4J863	uncultured_Caudovirales_phage	47.7	4.5e-26
WP_013240273.1|3974324_3974840_-	sigma-70 region 4 domain-containing protein	NA	I2E8Y5	Clostridium_phage	38.2	5.9e-23
WP_013240274.1|3974843_3976175_-	DEAD/DEAH box helicase	NA	A0A1S7FYY5	Listeria_phage	62.7	1.0e-151
WP_148222389.1|3976134_3976230_-	helicase	NA	A0A0A7S069	Clostridium_phage	77.4	1.4e-07
WP_013240275.1|3976259_3976670_-	HNH endonuclease	NA	A0A0N9ENE5	Pseudomonas_phage	40.6	9.0e-06
WP_013240276.1|3976670_3976946_-	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.6	6.6e-21
WP_013240277.1|3977220_3979644_-	phage-like protein	NA	A0A0A7RTG3	Clostridium_phage	78.8	0.0e+00
WP_041705200.1|3979687_3979906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013240278.1|3980048_3981395_-	SIR2 family protein	NA	A0A1S5SA14	Streptococcus_phage	26.2	2.8e-19
WP_013240279.1|3981610_3983563_-	hypothetical protein	NA	A0A0A7RTL3	Clostridium_phage	73.1	2.5e-287
WP_013240280.1|3983562_3984123_-	DUF2815 family protein	NA	A0A0A7RVM4	Clostridium_phage	86.6	8.9e-89
WP_013240281.1|3984155_3985307_-	DUF2800 domain-containing protein	NA	A0A0A7S066	Clostridium_phage	70.4	1.1e-154
WP_013240282.1|3985306_3985726_-	hypothetical protein	NA	A0A0A7RTD8	Clostridium_phage	39.2	2.8e-10
WP_013240283.1|3985754_3986030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049781931.1|3986029_3986233_-	hypothetical protein	NA	A0A0A7RTK9	Clostridium_phage	57.6	2.8e-16
WP_013240285.1|3986270_3986744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041705202.1|3986956_3987493_-	sigma-70 family RNA polymerase sigma factor	NA	A0A0A0RUJ6	Bacillus_phage	23.6	2.1e-07
WP_041705203.1|3987509_3987692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081442090.1|3987698_3987866_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013240288.1|3987866_3988121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041705205.1|3988133_3988958_-	Rha family transcriptional regulator	NA	R9QMZ3	Lactococcus_phage	41.9	7.5e-44
WP_013240290.1|3988972_3989173_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013240291.1|3989374_3990319_+	helix-turn-helix domain-containing protein	NA	Q4ZB06	Staphylococcus_virus	42.3	4.4e-24
WP_013240292.1|3990356_3991532_+|integrase	site-specific integrase	integrase	A0A1B0T6A8	Bacillus_phage	32.2	4.2e-40
3991622:3991665	attR	TGGTGCACCCAGGGAGATTCGAACTCCCGGCCTCTGGATTCGAA	NA	NA	NA	NA
