assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000146185.1_ASM14618v1	NC_012778	[Eubacterium] eligens ATCC 27750, complete sequence	1	752019-752104	1	CRISPRCasFinder	no		DinG,DEDDh,cas3,cas2,cas1,cas12a,csa3,cas3HD	Orphan	AGCCACGGAGGAAGTCCAAAAGGA	24	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,cas2,cas1,cas12a,csa3,cas3HD,RT,WYL,cas4	NA,NA|245aa|down_0|NC_012778.1_752257_752992_+	NA|252aa|up_9|NC_012778.1_737429_738185_+	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]	NA|390aa|up_8|NC_012778.1_738264_739434_+	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|307aa|up_7|NC_012778.1_739522_740443_+	pfam03419, Peptidase_U4, Sporulation factor SpoIIGA	NA|247aa|up_6|NC_012778.1_740485_741226_+	PRK08301, PRK08301, RNA polymerase sporulation sigma factor SigE	NA|256aa|up_5|NC_012778.1_741280_742048_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|605aa|up_4|NC_012778.1_742047_743862_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|385aa|up_3|NC_012778.1_743854_745009_+	PRK05799, PRK05799, oxygen-independent coproporphyrinogen III oxidase	NA|262aa|up_2|NC_012778.1_745063_745849_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|583aa|up_1|NC_012778.1_746115_747864_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|1187aa|up_0|NC_012778.1_748142_751703_+	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|245aa|down_0|NC_012778.1_752257_752992_+	NA	NA|579aa|down_1|NC_012778.1_753202_754939_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|322aa|down_2|NC_012778.1_755006_755972_+	PRK09283, PRK09283, porphobilinogen synthase	NA|425aa|down_3|NC_012778.1_756013_757288_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|406aa|down_4|NC_012778.1_757312_758530_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|296aa|down_5|NC_012778.1_758538_759426_+	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|277aa|down_6|NC_012778.1_759429_760260_+	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|311aa|down_7|NC_012778.1_760773_761706_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|472aa|down_8|NC_012778.1_761845_763261_+	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein	NA|105aa|down_9|NC_012778.1_763402_763717_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_000146185.1_ASM14618v1	NC_012778	[Eubacterium] eligens ATCC 27750, complete sequence	2	1467680-1468217	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas12a,csa3	DinG,DEDDh,cas3,cas2,cas1,cas12a,csa3,cas3HD	Type V-A,Type I-A	ATCTACAAAGTAGAAATTATTTAAGGTTATTCAAAC,ATCTACAAAGTAGAAATTATTTAAGGTTATTCAAAC,ATCTACAAAGTAGAAATTATTTAAGGTTATTCAAAC	36,36,36	0	0	NA	NA	V-A:V-A:V-A	8,8,7	8	TypeV-A,TypeI-A	DinG,DEDDh,cas3,cas2,cas1,cas12a,csa3,cas3HD,RT,WYL,cas4	NA,NA|322aa|down_3|NC_012778.1_1473048_1474014_+	NA|334aa|up_9|NC_012778.1_1450448_1451450_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|79aa|up_8|NC_012778.1_1451475_1451712_-	cd00367, PTS-HPr_like, Histidine-containing phosphocarrier protein (HPr)-like proteins	NA|386aa|up_7|NC_012778.1_1451773_1452931_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|495aa|up_6|NC_012778.1_1453049_1454534_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1513aa|up_5|NC_012778.1_1454595_1459134_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|304aa|up_4|NC_012778.1_1459501_1460413_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|538aa|up_3|NC_012778.1_1460415_1462029_-	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	NA|477aa|up_2|NC_012778.1_1462133_1463564_-	cd01821, Rhamnogalacturan_acetylesterase_like, Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases	NA|870aa|up_1|NC_012778.1_1463599_1466209_-	COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]	NA|256aa|up_0|NC_012778.1_1466230_1466998_-	cd06260, DUF820, Domain of unknown function (DUF820)	cas2|77aa|down_0|NC_012778.1_1468340_1468571_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|83aa|down_1|NC_012778.1_1468548_1468797_-	TIGR04329, hypothetical_protein_SbacW_07302_partial, CRISPR-associated endonuclease Cas1, subtype PREFRAN	cas12a|1283aa|down_2|NC_012778.1_1468899_1472748_-	TIGR04330, conserved_hypothetical_protein, CRISPR-associated protein Cpf1, subtype PREFRAN	NA|322aa|down_3|NC_012778.1_1473048_1474014_+	NA	NA|291aa|down_4|NC_012778.1_1474072_1474945_-	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase	NA|374aa|down_5|NC_012778.1_1474946_1476068_-	PRK13551, PRK13551, agmatine deiminase; Provisional	NA|410aa|down_6|NC_012778.1_1476070_1477300_-	cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase	NA|420aa|down_7|NC_012778.1_1477315_1478575_-	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	NA|286aa|down_8|NC_012778.1_1478571_1479429_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|485aa|down_9|NC_012778.1_1479476_1480931_-	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
GCF_000146185.1_ASM14618v1	NC_012778	[Eubacterium] eligens ATCC 27750, complete sequence	3	1735464-1735667	2	CRT	no		DinG,DEDDh,cas3,cas2,cas1,cas12a,csa3,cas3HD	Orphan	CTTCCCGATTTTGGACTT	18	0	0	NA	NA	NA	3	3	Orphan	DinG,DEDDh,cas3,cas2,cas1,cas12a,csa3,cas3HD,RT,WYL,cas4	NA|47aa|up_9|NC_012778.1_1722966_1723107_-,NA|100aa|up_8|NC_012778.1_1729365_1729665_-,NA|158aa|up_7|NC_012778.1_1729657_1730131_-,NA|76aa|up_6|NC_012778.1_1730140_1730368_-,NA|109aa|up_2|NC_012778.1_1733802_1734129_-,NA|95aa|up_0|NC_012778.1_1735131_1735416_-,NA	NA|47aa|up_9|NC_012778.1_1722966_1723107_-	NA	NA|100aa|up_8|NC_012778.1_1729365_1729665_-	NA	NA|158aa|up_7|NC_012778.1_1729657_1730131_-	NA	NA|76aa|up_6|NC_012778.1_1730140_1730368_-	NA	NA|535aa|up_5|NC_012778.1_1730611_1732216_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|159aa|up_4|NC_012778.1_1732251_1732728_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|322aa|up_3|NC_012778.1_1732834_1733800_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|109aa|up_2|NC_012778.1_1733802_1734129_-	NA	NA|338aa|up_1|NC_012778.1_1734121_1735135_-	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|95aa|up_0|NC_012778.1_1735131_1735416_-	NA	NA|332aa|down_0|NC_012778.1_1735699_1736695_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|334aa|down_1|NC_012778.1_1737091_1738093_-	pfam07486, Hydrolase_2, Cell Wall Hydrolase	NA|265aa|down_2|NC_012778.1_1738295_1739090_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|325aa|down_3|NC_012778.1_1739115_1740090_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1189aa|down_4|NC_012778.1_1740196_1743763_-	PRK06826, dnaE, DNA polymerase III DnaE; Reviewed	NA|257aa|down_5|NC_012778.1_1743864_1744635_+	pfam07238, PilZ, PilZ domain	NA|704aa|down_6|NC_012778.1_1744667_1746779_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|538aa|down_7|NC_012778.1_1747005_1748619_+	PRK05380, pyrG, CTP synthetase; Validated	NA|130aa|down_8|NC_012778.1_1748705_1749095_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|229aa|down_9|NC_012778.1_1749192_1749879_-	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]
GCF_000146185.1_ASM14618v1	NC_012778	[Eubacterium] eligens ATCC 27750, complete sequence	4	2090720-2090897	2	PILER-CR	no		DinG,DEDDh,cas3,cas2,cas1,cas12a,csa3,cas3HD	Orphan	ACTTTCTCTCGGCTTCACACTGCTTTAACGTCCAATTTCGCGTGCCGACTTCCC	54	2	3	2090774-2090789|2090774-2090789|2090844-2090868	NC_012778.1_2090898-2090913|NC_012778.1_2091022-2091037|NC_012778.1_2090943-2090967	NA	2	2	Orphan	DinG,DEDDh,cas3,cas2,cas1,cas12a,csa3,cas3HD,RT,WYL,cas4	NA|695aa|up_9|NC_012778.1_2072283_2074368_-,NA|385aa|up_8|NC_012778.1_2074368_2075523_-,NA|239aa|up_4|NC_012778.1_2085233_2085950_-,NA|506aa|up_3|NC_012778.1_2085939_2087457_-,NA|375aa|down_4|NC_012778.1_2093918_2095043_-	NA|695aa|up_9|NC_012778.1_2072283_2074368_-	NA	NA|385aa|up_8|NC_012778.1_2074368_2075523_-	NA	NA|663aa|up_7|NC_012778.1_2075868_2077857_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|929aa|up_6|NC_012778.1_2077895_2080682_-	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|1478aa|up_5|NC_012778.1_2080813_2085247_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|239aa|up_4|NC_012778.1_2085233_2085950_-	NA	NA|506aa|up_3|NC_012778.1_2085939_2087457_-	NA	NA|199aa|up_2|NC_012778.1_2087551_2088148_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|117aa|up_1|NC_012778.1_2088147_2088498_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|546aa|up_0|NC_012778.1_2088497_2090135_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|185aa|down_0|NC_012778.1_2091055_2091610_-	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|306aa|down_1|NC_012778.1_2091645_2092563_-	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|157aa|down_2|NC_012778.1_2092918_2093389_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|180aa|down_3|NC_012778.1_2093391_2093931_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|375aa|down_4|NC_012778.1_2093918_2095043_-	NA	NA|343aa|down_5|NC_012778.1_2095123_2096152_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|285aa|down_6|NC_012778.1_2096317_2097172_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|269aa|down_7|NC_012778.1_2097431_2098238_-	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|658aa|down_8|NC_012778.1_2098243_2100217_-	PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed	NA|603aa|down_9|NC_012778.1_2100406_2102215_+	pfam05960, DUF885, Bacterial protein of unknown function (DUF885)
GCF_000146185.1_ASM14618v1	NC_012780	[Eubacterium] eligens ATCC 27750 plasmid unnamed, complete sequence	1	230533-230626	1	CRISPRCasFinder	no	WYL	csa3,cas2,WYL	Unclear	GCTCTGGTGCGTCGGTTTGGACTTTTCAAGTC	32	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,cas2,cas1,cas12a,csa3,cas3HD,RT,WYL,cas4	NA,NA|145aa|down_9|NC_012780.1_241412_241847_-	NA|147aa|up_9|NC_012780.1_220866_221307_-	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|258aa|up_8|NC_012780.1_221556_222330_-	TIGR01230, Agmatinase_Agmatine_ureohydrolase_AUH	NA|330aa|up_7|NC_012780.1_222352_223342_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|241aa|up_6|NC_012780.1_223398_224121_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|303aa|up_5|NC_012780.1_224113_225022_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|257aa|up_4|NC_012780.1_225058_225829_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|310aa|up_3|NC_012780.1_225831_226761_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|153aa|up_2|NC_012780.1_226765_227224_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|244aa|up_1|NC_012780.1_227220_227952_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|798aa|up_0|NC_012780.1_228015_230409_-	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|82aa|down_0|NC_012780.1_230865_231111_-	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|297aa|down_1|NC_012780.1_231365_232256_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|178aa|down_2|NC_012780.1_232273_232807_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|203aa|down_3|NC_012780.1_233032_233641_+	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|564aa|down_4|NC_012780.1_233716_235408_-	cd01948, EAL, EAL domain	NA|573aa|down_5|NC_012780.1_235454_237173_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|347aa|down_6|NC_012780.1_237719_238760_-	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	NA|385aa|down_7|NC_012780.1_238808_239963_-	COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]	NA|405aa|down_8|NC_012780.1_240114_241329_+	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|145aa|down_9|NC_012780.1_241412_241847_-	NA
