assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000147075.1_ASM14707v1	NC_014484	Spirochaeta thermophila DSM 6192, complete sequence	1	461101-462491	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,cas6	Type I-U,Type I-C, Type I-U?	GTCGCGCCCCCTGCGGGCGCGTGGATTGAAACA,GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC,GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC,GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	33,32,32,32	0	0	NA	NA	I-C:I-C:I-C:I-C	18,20,20,18	20	TypeI-U,TypeI-C,TypeI-U?	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,cas6	NA,NA|239aa|down_1|NC_014484.1_463454_464171_+,NA|102aa|down_3|NC_014484.1_466645_466951_+	NA|152aa|up_9|NC_014484.1_449843_450299_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|558aa|up_8|NC_014484.1_450298_451972_+	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	WYL|329aa|up_7|NC_014484.1_452093_453080_+	pfam13280, WYL, WYL domain	cas3|740aa|up_6|NC_014484.1_453308_455528_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|214aa|up_5|NC_014484.1_455561_456203_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|597aa|up_4|NC_014484.1_456199_457990_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|294aa|up_3|NC_014484.1_457995_458877_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|213aa|up_2|NC_014484.1_458951_459590_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|345aa|up_1|NC_014484.1_459586_460621_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|96aa|up_0|NC_014484.1_460642_460930_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|186aa|down_0|NC_014484.1_462867_463425_+	pfam14385, DUF4416, Domain of unknown function (DUF4416)	NA|239aa|down_1|NC_014484.1_463454_464171_+	NA	NA|810aa|down_2|NC_014484.1_464188_466618_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|102aa|down_3|NC_014484.1_466645_466951_+	NA	NA|328aa|down_4|NC_014484.1_467238_468222_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|298aa|down_5|NC_014484.1_468231_469125_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|518aa|down_6|NC_014484.1_469175_470729_+	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|739aa|down_7|NC_014484.1_470816_473033_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|692aa|down_8|NC_014484.1_473137_475213_+	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|325aa|down_9|NC_014484.1_475271_476246_-	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
GCF_000147075.1_ASM14707v1	NC_014484	Spirochaeta thermophila DSM 6192, complete sequence	2	756901-756991	2	CRISPRCasFinder	no		WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,cas6	Orphan	GGCCTTCGGTGGCGAGGGTGAGGATG	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,cas6	NA|448aa|up_4|NC_014484.1_747935_749279_-,NA|1567aa|up_3|NC_014484.1_749414_754115_-,NA|311aa|up_2|NC_014484.1_754173_755106_+,NA|237aa|down_2|NC_014484.1_759407_760118_+,NA|927aa|down_7|NC_014484.1_762709_765490_+	NA|459aa|up_9|NC_014484.1_739872_741249_-	sd00006, TPR, Tetratricopeptide repeat	NA|252aa|up_8|NC_014484.1_741253_742009_+	sd00006, TPR, Tetratricopeptide repeat	NA|654aa|up_7|NC_014484.1_742017_743979_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|574aa|up_6|NC_014484.1_743994_745716_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|732aa|up_5|NC_014484.1_745729_747925_-	pfam04773, FecR, FecR protein	NA|448aa|up_4|NC_014484.1_747935_749279_-	NA	NA|1567aa|up_3|NC_014484.1_749414_754115_-	NA	NA|311aa|up_2|NC_014484.1_754173_755106_+	NA	NA|369aa|up_1|NC_014484.1_755109_756216_+	pfam00520, Ion_trans, Ion transport protein	NA|96aa|up_0|NC_014484.1_756220_756508_+	pfam04456, DUF503, Protein of unknown function (DUF503)	NA|277aa|down_0|NC_014484.1_757201_758032_-	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	NA|425aa|down_1|NC_014484.1_758028_759303_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|237aa|down_2|NC_014484.1_759407_760118_+	NA	NA|422aa|down_3|NC_014484.1_760134_761400_+	pfam07238, PilZ, PilZ domain	NA|131aa|down_4|NC_014484.1_761327_761720_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|117aa|down_5|NC_014484.1_761779_762130_-	pfam07238, PilZ, PilZ domain	NA|189aa|down_6|NC_014484.1_762089_762656_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|927aa|down_7|NC_014484.1_762709_765490_+	NA	NA|241aa|down_8|NC_014484.1_765635_766358_-	TIGR02495, RADICAL-ACTIVATING_ENZYME, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|160aa|down_9|NC_014484.1_766354_766834_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains
GCF_000147075.1_ASM14707v1	NC_014484	Spirochaeta thermophila DSM 6192, complete sequence	3	797244-797332	3	CRISPRCasFinder	no		WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,cas6	Orphan	GGAAGAGAAGGCCGCCCTCGAAGCCC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,cas6	NA,NA|319aa|down_4|NC_014484.1_803823_804780_-,NA|133aa|down_6|NC_014484.1_805663_806062_-	NA|173aa|up_9|NC_014484.1_784414_784933_-	pfam02283, CobU, Cobinamide kinase / cobinamide phosphate guanyltransferase	NA|203aa|up_8|NC_014484.1_784961_785570_-	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|473aa|up_7|NC_014484.1_785566_786985_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|281aa|up_6|NC_014484.1_787072_787915_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|299aa|up_5|NC_014484.1_787911_788808_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|419aa|up_4|NC_014484.1_788877_790134_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|451aa|up_3|NC_014484.1_790335_791688_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|679aa|up_2|NC_014484.1_791662_793699_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|335aa|up_1|NC_014484.1_793750_794755_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|413aa|up_0|NC_014484.1_795301_796540_+	pfam13360, PQQ_2, PQQ-like domain	NA|525aa|down_0|NC_014484.1_798177_799752_+	PRK13376, pyrB, bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional	NA|135aa|down_1|NC_014484.1_799753_800158_-	cd16410, ParB_N_like, ParB N-terminal, parA-binding, -like domain of bacterial and plasmid parABS partitioning systems	NA|845aa|down_2|NC_014484.1_800204_802739_-	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|267aa|down_3|NC_014484.1_802867_803668_+	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase	NA|319aa|down_4|NC_014484.1_803823_804780_-	NA	NA|297aa|down_5|NC_014484.1_804776_805667_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|133aa|down_6|NC_014484.1_805663_806062_-	NA	NA|321aa|down_7|NC_014484.1_806058_807021_-	TIGR02521, Uncharacterized_protein_HI_0366, type IV pilus biogenesis/stability protein PilW	NA|328aa|down_8|NC_014484.1_807017_808001_-	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|271aa|down_9|NC_014484.1_807997_808810_-	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents
