assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000154585.2_ASM15458v2	NC_016768	Mycobacterium tuberculosis KZN 4207, complete genome	1	369320-370018	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	369608-369649|369683-369715	NC_016768.1_377669-377710|NC_016768.1_376484-376516	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA|101aa|up_4|NC_016768.1_366332_366635_+,NA|161aa|down_1|NC_016768.1_379458_379941_-,NA|410aa|down_5|NC_016768.1_382057_383287_+	NA|262aa|up_9|NC_016768.1_361036_361822_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NC_016768.1_361810_362614_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NC_016768.1_362623_364021_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|589aa|up_6|NC_016768.1_364199_365966_+	pfam00934, PE, PE family	NA|76aa|up_5|NC_016768.1_366108_366336_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NC_016768.1_366332_366635_+	NA	NA|74aa|up_3|NC_016768.1_366682_366904_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NC_016768.1_366900_367326_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NC_016768.1_367461_368094_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NC_016768.1_368090_368999_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NC_016768.1_378799_379471_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NC_016768.1_379458_379941_-	NA	NA|239aa|down_2|NC_016768.1_379998_380715_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NC_016768.1_380816_381473_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NC_016768.1_381542_382034_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NC_016768.1_382057_383287_+	NA	NA|621aa|down_6|NC_016768.1_383441_385304_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NC_016768.1_385375_385762_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NC_016768.1_385764_386427_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NC_016768.1_386487_387372_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000154585.2_ASM15458v2	NC_016768	Mycobacterium tuberculosis KZN 4207, complete genome	2	692335-692411	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA	NA|72aa|up_9|NC_016768.1_678019_678235_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NC_016768.1_678231_678639_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NC_016768.1_678698_679385_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NC_016768.1_679538_682172_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NC_016768.1_682194_684582_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NC_016768.1_684719_685442_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NC_016768.1_685438_686236_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NC_016768.1_686237_687125_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NC_016768.1_687130_688345_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NC_016768.1_689368_690814_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NC_016768.1_693546_695097_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_016768.1_695148_695541_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NC_016768.1_695537_695795_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NC_016768.1_695977_697213_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NC_016768.1_697463_697877_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NC_016768.1_697873_698110_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NC_016768.1_698213_698720_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NC_016768.1_698833_699304_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NC_016768.1_699347_700109_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NC_016768.1_700165_700477_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000154585.2_ASM15458v2	NC_016768	Mycobacterium tuberculosis KZN 4207, complete genome	3	926465-927412	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927248-927283|927248-927283|927248-927283	NC_016768.1_675438-675403|NC_016768.1_1991271-1991306|NC_016768.1_3195080-3195045	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|184aa|down_2|NC_016768.1_931422_931974_-,NA|147aa|down_8|NC_016768.1_936277_936718_-	NA|685aa|up_9|NC_016768.1_914101_916156_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NC_016768.1_916321_917491_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NC_016768.1_917578_918595_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NC_016768.1_918756_919398_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NC_016768.1_919478_920534_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NC_016768.1_920585_920978_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NC_016768.1_921035_921458_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NC_016768.1_921419_921710_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NC_016768.1_921814_922720_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NC_016768.1_922738_923554_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NC_016768.1_927681_930330_-	pfam00934, PE, PE family	NA|215aa|down_1|NC_016768.1_930797_931442_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NC_016768.1_931422_931974_-	NA	NA|421aa|down_3|NC_016768.1_932091_933353_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|84aa|down_4|NC_016768.1_933826_934078_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|171aa|down_5|NC_016768.1_934094_934607_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|132aa|down_6|NC_016768.1_934603_934999_-	COG2154, COG2154, Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]	NA|360aa|down_7|NC_016768.1_935049_936129_-	COG2896, MoaA, Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]	NA|147aa|down_8|NC_016768.1_936277_936718_-	NA	NA|528aa|down_9|NC_016768.1_936816_938400_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]
GCF_000154585.2_ASM15458v2	NC_016768	Mycobacterium tuberculosis KZN 4207, complete genome	4	1290204-1291771	1,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Type III-D,Type III-B,Type III-C,Type III-A	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	21,21,21	21	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|203aa|down_3|NC_016768.1_1296853_1297462_-,NA|104aa|down_4|NC_016768.1_1297881_1298193_-,NA|86aa|down_5|NC_016768.1_1298297_1298555_-,NA|64aa|down_7|NC_016768.1_1300141_1300333_-,NA|135aa|down_8|NC_016768.1_1300329_1300734_-,NA|85aa|down_9|NC_016768.1_1300881_1301136_+	NA|182aa|up_9|NC_016768.1_1280333_1280879_+	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	cas6|241aa|up_8|NC_016768.1_1281278_1282001_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|813aa|up_7|NC_016768.1_1281997_1284436_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|125aa|up_6|NC_016768.1_1284432_1284807_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|237aa|up_5|NC_016768.1_1284816_1285527_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|up_4|NC_016768.1_1285507_1286416_+	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm5gr7|376aa|up_3|NC_016768.1_1286412_1287540_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|383aa|up_2|NC_016768.1_1287635_1288784_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	cas1|339aa|up_1|NC_016768.1_1288796_1289813_+	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	cas2|114aa|up_0|NC_016768.1_1289813_1290155_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|421aa|down_0|NC_016768.1_1291847_1293109_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|271aa|down_1|NC_016768.1_1294564_1295377_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|470aa|down_2|NC_016768.1_1295373_1296783_-	pfam00665, rve, Integrase core domain	NA|203aa|down_3|NC_016768.1_1296853_1297462_-	NA	NA|104aa|down_4|NC_016768.1_1297881_1298193_-	NA	NA|86aa|down_5|NC_016768.1_1298297_1298555_-	NA	NA|385aa|down_6|NC_016768.1_1298788_1299943_-	pfam00665, rve, Integrase core domain	NA|64aa|down_7|NC_016768.1_1300141_1300333_-	NA	NA|135aa|down_8|NC_016768.1_1300329_1300734_-	NA	NA|85aa|down_9|NC_016768.1_1300881_1301136_+	NA
GCF_000154585.2_ASM15458v2	NC_016768	Mycobacterium tuberculosis KZN 4207, complete genome	5	1293136-1294416	3,2,4	CRT,PILER-CR,CRISPRCasFinder	no	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,c2c9_V-U4	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Type III-D,Type III-B,Type III-C,Type III-A	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,16,16	17	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|203aa|down_2|NC_016768.1_1296853_1297462_-,NA|104aa|down_3|NC_016768.1_1297881_1298193_-,NA|86aa|down_4|NC_016768.1_1298297_1298555_-,NA|64aa|down_6|NC_016768.1_1300141_1300333_-,NA|135aa|down_7|NC_016768.1_1300329_1300734_-,NA|85aa|down_8|NC_016768.1_1300881_1301136_+	cas6|241aa|up_9|NC_016768.1_1281278_1282001_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|813aa|up_8|NC_016768.1_1281997_1284436_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|125aa|up_7|NC_016768.1_1284432_1284807_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|237aa|up_6|NC_016768.1_1284816_1285527_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|up_5|NC_016768.1_1285507_1286416_+	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm5gr7|376aa|up_4|NC_016768.1_1286412_1287540_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|383aa|up_3|NC_016768.1_1287635_1288784_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	cas1|339aa|up_2|NC_016768.1_1288796_1289813_+	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	cas2|114aa|up_1|NC_016768.1_1289813_1290155_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|421aa|up_0|NC_016768.1_1291847_1293109_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|271aa|down_0|NC_016768.1_1294564_1295377_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|470aa|down_1|NC_016768.1_1295373_1296783_-	pfam00665, rve, Integrase core domain	NA|203aa|down_2|NC_016768.1_1296853_1297462_-	NA	NA|104aa|down_3|NC_016768.1_1297881_1298193_-	NA	NA|86aa|down_4|NC_016768.1_1298297_1298555_-	NA	NA|385aa|down_5|NC_016768.1_1298788_1299943_-	pfam00665, rve, Integrase core domain	NA|64aa|down_6|NC_016768.1_1300141_1300333_-	NA	NA|135aa|down_7|NC_016768.1_1300329_1300734_-	NA	NA|85aa|down_8|NC_016768.1_1300881_1301136_+	NA	NA|92aa|down_9|NC_016768.1_1301311_1301587_-	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000154585.2_ASM15458v2	NC_016768	Mycobacterium tuberculosis KZN 4207, complete genome	6	2250771-2250912	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	TGAGTATTCCGTCGGTGACGGTTCCGCCGATCACGATTCCGGCTGGCAC	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA|127aa|up_5|NC_016768.1_2242873_2243254_+,NA|136aa|down_3|NC_016768.1_2259262_2259670_+	NA|256aa|up_9|NC_016768.1_2238586_2239354_+	PRK05867, PRK05867, SDR family oxidoreductase	NA|258aa|up_8|NC_016768.1_2239357_2240131_-	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|160aa|up_7|NC_016768.1_2240367_2240847_+	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|621aa|up_6|NC_016768.1_2240854_2242717_-	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|127aa|up_5|NC_016768.1_2242873_2243254_+	NA	NA|447aa|up_4|NC_016768.1_2243290_2244631_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|372aa|up_3|NC_016768.1_2244621_2245737_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|424aa|up_2|NC_016768.1_2246008_2247280_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|288aa|up_1|NC_016768.1_2247317_2248181_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|155aa|up_0|NC_016768.1_2248278_2248743_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|1389aa|down_0|NC_016768.1_2252492_2256659_+	pfam00823, PPE, PPE family	NA|399aa|down_1|NC_016768.1_2256828_2258025_-	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|368aa|down_2|NC_016768.1_2258024_2259128_-	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|136aa|down_3|NC_016768.1_2259262_2259670_+	NA	NA|251aa|down_4|NC_016768.1_2259647_2260400_-	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|335aa|down_5|NC_016768.1_2260499_2261504_+	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|202aa|down_6|NC_016768.1_2261603_2262209_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|198aa|down_7|NC_016768.1_2262291_2262885_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|148aa|down_8|NC_016768.1_2262998_2263442_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|741aa|down_9|NC_016768.1_2263479_2265702_+	PRK15061, PRK15061, catalase/peroxidase
GCF_000154585.2_ASM15458v2	NC_016768	Mycobacterium tuberculosis KZN 4207, complete genome	7	2357346-2358386	4	CRT	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	NNCGGCGGNGCCGGCGGN	18	2	6	2357487-2357507|2357487-2357507|2357487-2357507|2357487-2357507|2357586-2357606|2357586-2357606	NC_016768.1_2057293-2057313|NC_016768.1_2919455-2919475|NC_016768.1_2919614-2919634|NC_016768.1_3247197-3247217|NC_016768.1_3317713-3317693|NC_016768.1_3793289-3793309	NA	17	17	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|222aa|down_2|NC_016768.1_2361406_2362072_-	NA|248aa|up_9|NC_016768.1_2345775_2346519_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|163aa|up_8|NC_016768.1_2346515_2347004_-	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|135aa|up_7|NC_016768.1_2347243_2347648_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_6|NC_016768.1_2347685_2348564_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|up_5|NC_016768.1_2348580_2348913_-	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|308aa|up_4|NC_016768.1_2348974_2349898_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|210aa|up_3|NC_016768.1_2349890_2350520_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|809aa|up_2|NC_016768.1_2350716_2353143_-	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|548aa|up_1|NC_016768.1_2353157_2354801_-	PRK05858, PRK05858, acetolactate synthase	NA|640aa|up_0|NC_016768.1_2354871_2356791_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|488aa|down_0|NC_016768.1_2358541_2360005_-	PRK07121, PRK07121, FAD-binding protein	NA|235aa|down_1|NC_016768.1_2360639_2361344_-	pfam13305, WHG, WHG domain	NA|222aa|down_2|NC_016768.1_2361406_2362072_-	NA	NA|301aa|down_3|NC_016768.1_2362176_2363079_-	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|144aa|down_4|NC_016768.1_2363487_2363919_+	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|401aa|down_5|NC_016768.1_2364240_2365443_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|235aa|down_6|NC_016768.1_2365452_2366157_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|119aa|down_7|NC_016768.1_2366310_2366667_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|469aa|down_8|NC_016768.1_2366911_2368318_-	pfam00823, PPE, PPE family	NA|410aa|down_9|NC_016768.1_2368449_2369679_-	pfam00823, PPE, PPE family
GCF_000154585.2_ASM15458v2	NC_016768	Mycobacterium tuberculosis KZN 4207, complete genome	8	2776693-2777532	5	CRT	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	GNCGGCGGNANCGGCGGC	18	1	1	2776711-2776737	NC_016768.1_2773109-2773135	NA	14	14	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA|288aa|up_4|NC_016768.1_2768648_2769512_-,NA|137aa|down_5|NC_016768.1_2786716_2787127_+,NA|38aa|down_6|NC_016768.1_2787176_2787290_+	NA|269aa|up_9|NC_016768.1_2763146_2763953_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|592aa|up_8|NC_016768.1_2764000_2765776_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|314aa|up_7|NC_016768.1_2765931_2766873_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|up_6|NC_016768.1_2766869_2767655_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|311aa|up_5|NC_016768.1_2767766_2768699_+	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|288aa|up_4|NC_016768.1_2768648_2769512_-	NA	NA|329aa|up_3|NC_016768.1_2769531_2770518_+	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|422aa|up_2|NC_016768.1_2770545_2771811_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|738aa|up_1|NC_016768.1_2771962_2774176_+	pfam00934, PE, PE family	NA|309aa|up_0|NC_016768.1_2774224_2775151_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|701aa|down_0|NC_016768.1_2780214_2782317_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|374aa|down_1|NC_016768.1_2782333_2783455_+	PRK03343, PRK03343, transaldolase; Validated	NA|515aa|down_2|NC_016768.1_2783451_2784996_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|304aa|down_3|NC_016768.1_2785048_2785960_+	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|248aa|down_4|NC_016768.1_2785956_2786700_+	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|137aa|down_5|NC_016768.1_2786716_2787127_+	NA	NA|38aa|down_6|NC_016768.1_2787176_2787290_+	NA	NA|162aa|down_7|NC_016768.1_2787721_2788207_+	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|767aa|down_8|NC_016768.1_2788322_2790623_-	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|473aa|down_9|NC_016768.1_2790729_2792148_+	pfam00934, PE, PE family
GCF_000154585.2_ASM15458v2	NC_016768	Mycobacterium tuberculosis KZN 4207, complete genome	9	3733202-3734049	6	CRT	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCGCCGNNNCCNCCGTNNCCGCC	23	0	0	NA	NA	NA	11	11	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|96aa|down_4|NC_016768.1_3747922_3748210_-,NA|87aa|down_9|NC_016768.1_3761330_3761591_-	NA|282aa|up_9|NC_016768.1_3712579_3713425_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NC_016768.1_3713899_3714340_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NC_016768.1_3714373_3715243_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NC_016768.1_3715263_3716274_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NC_016768.1_3716558_3717191_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NC_016768.1_3717257_3718487_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NC_016768.1_3718769_3720119_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NC_016768.1_3720130_3721270_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NC_016768.1_3721266_3721998_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2538aa|up_0|NC_016768.1_3722006_3729620_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NC_016768.1_3735792_3736050_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NC_016768.1_3736305_3745779_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NC_016768.1_3746404_3746851_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NC_016768.1_3746887_3747628_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NC_016768.1_3747922_3748210_-	NA	NA|3717aa|down_5|NC_016768.1_3748546_3759697_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NC_016768.1_3759940_3760735_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NC_016768.1_3760816_3761188_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NC_016768.1_3761085_3761304_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NC_016768.1_3761330_3761591_-	NA
GCF_000154585.2_ASM15458v2	NC_016768	Mycobacterium tuberculosis KZN 4207, complete genome	10	3980498-3980657	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	1	14	3980522-3980542|3980522-3980542|3980522-3980542|3980522-3980542|3980522-3980542|3980522-3980542|3980522-3980542|3980522-3980542|3980522-3980542|3980522-3980542|3980522-3980542|3980522-3980542|3980522-3980542|3980522-3980542	NC_016768.1_334771-334751|NC_016768.1_339848-339828|NC_016768.1_528492-528472|NC_016768.1_673742-673722|NC_016768.1_837941-837961|NC_016768.1_840685-840705|NC_016768.1_927879-927859|NC_016768.1_1490768-1490748|NC_016768.1_2773247-2773267|NC_016768.1_3217337-3217357|NC_016768.1_3731226-3731206|NC_016768.1_3793622-3793642|NC_016768.1_3927626-3927646|NC_016768.1_3927671-3927691	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|89aa|down_8|NC_016768.1_3990129_3990396_-,NA|57aa|down_9|NC_016768.1_3990426_3990597_-	NA|305aa|up_9|NC_016768.1_3969347_3970262_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NC_016768.1_3970284_3971064_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NC_016768.1_3971118_3971862_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NC_016768.1_3971861_3972740_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NC_016768.1_3972736_3973489_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NC_016768.1_3973586_3974654_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NC_016768.1_3974650_3976708_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NC_016768.1_3976795_3977665_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NC_016768.1_3977769_3978930_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NC_016768.1_3978994_3979597_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NC_016768.1_3981609_3982398_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NC_016768.1_3982394_3983552_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NC_016768.1_3983599_3985123_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NC_016768.1_3985123_3986257_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NC_016768.1_3986253_3987213_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NC_016768.1_3987209_3988166_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NC_016768.1_3988162_3989329_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NC_016768.1_3989293_3990145_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NC_016768.1_3990129_3990396_-	NA	NA|57aa|down_9|NC_016768.1_3990426_3990597_-	NA
GCF_000154585.2_ASM15458v2	NC_016768	Mycobacterium tuberculosis KZN 4207, complete genome	11	3980726-3981103	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	3	63	3980750-3980770|3980750-3980770|3980750-3980770|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980795-3980815|3980840-3980860|3980840-3980860|3980840-3980860|3980840-3980860	NC_016768.1_429991-429971|NC_016768.1_430021-430001|NC_016768.1_434305-434285|NC_016768.1_1490768-1490748|NC_016768.1_3217337-3217357|NC_016768.1_132426-132446|NC_016768.1_336540-336520|NC_016768.1_339524-339504|NC_016768.1_528492-528472|NC_016768.1_673472-673452|NC_016768.1_673481-673461|NC_016768.1_673532-673512|NC_016768.1_673541-673521|NC_016768.1_673652-673632|NC_016768.1_674375-674355|NC_016768.1_837941-837961|NC_016768.1_838949-838969|NC_016768.1_840595-840615|NC_016768.1_841930-841950|NC_016768.1_927879-927859|NC_016768.1_1453490-1453510|NC_016768.1_1490666-1490646|NC_016768.1_1611643-1611663|NC_016768.1_2330543-2330563|NC_016768.1_2331014-2331034|NC_016768.1_2429311-2429331|NC_016768.1_2773247-2773267|NC_016768.1_2791930-2791950|NC_016768.1_3023655-3023675|NC_016768.1_3220102-3220122|NC_016768.1_3220156-3220176|NC_016768.1_3316705-3316685|NC_016768.1_3440058-3440078|NC_016768.1_3730727-3730707|NC_016768.1_3731334-3731314|NC_016768.1_3731352-3731332|NC_016768.1_3731403-3731383|NC_016768.1_3731454-3731434|NC_016768.1_3731598-3731578|NC_016768.1_3732528-3732508|NC_016768.1_3732705-3732685|NC_016768.1_3733095-3733075|NC_016768.1_3772510-3772530|NC_016768.1_3912154-3912174|NC_016768.1_3912250-3912270|NC_016768.1_3913246-3913266|NC_016768.1_3913255-3913275|NC_016768.1_3913264-3913284|NC_016768.1_3913273-3913293|NC_016768.1_3914044-3914064|NC_016768.1_3914239-3914259|NC_016768.1_3920142-3920162|NC_016768.1_3924992-3925012|NC_016768.1_3925691-3925711|NC_016768.1_3926333-3926353|NC_016768.1_3927554-3927574|NC_016768.1_3927671-3927691|NC_016768.1_3928118-3928138|NC_016768.1_3931897-3931917|NC_016768.1_3146084-3146104|NC_016768.1_429991-429971|NC_016768.1_430021-430001|NC_016768.1_434305-434285	NA	6	6	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|89aa|down_8|NC_016768.1_3990129_3990396_-,NA|57aa|down_9|NC_016768.1_3990426_3990597_-	NA|305aa|up_9|NC_016768.1_3969347_3970262_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NC_016768.1_3970284_3971064_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NC_016768.1_3971118_3971862_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NC_016768.1_3971861_3972740_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NC_016768.1_3972736_3973489_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NC_016768.1_3973586_3974654_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NC_016768.1_3974650_3976708_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NC_016768.1_3976795_3977665_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NC_016768.1_3977769_3978930_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NC_016768.1_3978994_3979597_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NC_016768.1_3981609_3982398_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NC_016768.1_3982394_3983552_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NC_016768.1_3983599_3985123_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NC_016768.1_3985123_3986257_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NC_016768.1_3986253_3987213_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NC_016768.1_3987209_3988166_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NC_016768.1_3988162_3989329_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NC_016768.1_3989293_3990145_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NC_016768.1_3990129_3990396_-	NA	NA|57aa|down_9|NC_016768.1_3990426_3990597_-	NA
GCF_000154585.2_ASM15458v2	NC_016768	Mycobacterium tuberculosis KZN 4207, complete genome	12	4093997-4094085	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA|257aa|up_8|NC_016768.1_4084583_4085354_-,NA|119aa|up_3|NC_016768.1_4090488_4090845_+,NA|52aa|up_2|NC_016768.1_4090944_4091100_+,NA|233aa|up_0|NC_016768.1_4093101_4093800_-,NA|126aa|down_6|NC_016768.1_4099320_4099698_+	NA|288aa|up_9|NC_016768.1_4082965_4083829_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NC_016768.1_4084583_4085354_-	NA	NA|549aa|up_7|NC_016768.1_4085350_4086997_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NC_016768.1_4086993_4087857_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NC_016768.1_4087849_4088776_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NC_016768.1_4088777_4090403_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NC_016768.1_4090488_4090845_+	NA	NA|52aa|up_2|NC_016768.1_4090944_4091100_+	NA	NA|652aa|up_1|NC_016768.1_4091110_4093066_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NC_016768.1_4093101_4093800_-	NA	NA|173aa|down_0|NC_016768.1_4094145_4094664_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_016768.1_4094664_4095648_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_016768.1_4095640_4096834_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_016768.1_4096839_4097661_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NC_016768.1_4097792_4098476_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_016768.1_4098475_4099213_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_016768.1_4099320_4099698_+	NA	NA|225aa|down_7|NC_016768.1_4099796_4100471_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_016768.1_4100576_4101371_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_016768.1_4101377_4101833_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
