The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_022126	Staphylococcus aureus subsp. aureus 55/2053 plasmid unnamed, complete sequence	20449	10024	17372	20449	transposase	Staphylococcus_phage(50.0%)	8	NA	NA
WP_001105968.1|10024_10699_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	9.9e-127
WP_000003267.1|10933_13117_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.2	1.3e-252
WP_000726007.1|13109_13478_-	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	85.2	4.2e-55
WP_000690630.1|13847_14426_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.2e-41
WP_000583535.1|14556_15165_+	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	29.7	6.6e-13
WP_000358995.1|15355_15751_-	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_162887382.1|15768_17061_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.9	7.8e-189
WP_000120606.1|17057_17372_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	74.0	1.6e-39
>prophage 1
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	2756919	661723	669542	2756919		Hokovirus(16.67%)	10	NA	NA
WP_000244416.1|661723_662779_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|662778_663465_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|663439_663913_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093552.1|664254_664695_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637686.1|664974_665559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|665657_666371_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|666374_666794_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|666795_667464_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604510.1|667813_668407_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	2.6e-38
WP_001217804.1|668390_669542_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	2756919	681514	695652	2756919		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663016.1|681514_682573_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
WP_000197262.1|682731_683274_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429002.1|683825_684743_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
WP_031788440.1|684833_684935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|685012_686518_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|686857_687358_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068491.1|687377_688244_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|689045_689444_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|689406_691512_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|691631_692603_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876309.1|692979_693951_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
WP_001245566.1|693937_694894_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
WP_000616865.1|694890_695652_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 3
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	2756919	778769	794413	2756919	integrase,terminase,coat	Staphylococcus_phage(89.47%)	25	778610:778629	794868:794887
778610:778629	attL	GTTATTCCTGCTAAATAATT	NA	NA	NA	NA
WP_000270271.1|778769_779990_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.3	1.1e-99
WP_025173845.1|780003_781392_-	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_001661454.1|781418_781991_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000560872.1|782162_782384_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JFN1	uncultured_Caudovirales_phage	43.5	2.0e-07
WP_000124597.1|782384_782657_+	helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	84.4	7.7e-38
WP_000784891.1|782668_782824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231375.1|782808_783012_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	100.0	1.0e-31
WP_000695073.1|783013_783397_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	89.8	5.2e-56
WP_001103971.1|783397_783691_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	100.0	1.3e-43
WP_001002696.1|783778_784648_+	primase alpha helix C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	95.2	1.1e-162
WP_000447476.1|784661_786371_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	95.8	0.0e+00
WP_000356930.1|786700_787081_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	98.4	1.5e-68
WP_001047696.1|787077_787719_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.4	1.9e-111
WP_001190615.1|788254_788596_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|788607_789186_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448773.1|789203_789422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771367.1|789472_790000_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	1.6e-87
WP_025173847.1|790131_790344_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	91.4	1.7e-29
WP_001293081.1|790340_790910_+|terminase	terminase small subunit	terminase	A0A1W6JQF0	Staphylococcus_phage	97.4	6.0e-101
WP_001794228.1|791110_792133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000091245.1|792151_792715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001035614.1|792963_793518_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.6	4.7e-74
WP_001788502.1|793892_794045_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139425.1|794115_794226_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	97.2	3.8e-12
WP_001286805.1|794227_794413_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
794868:794887	attR	GTTATTCCTGCTAAATAATT	NA	NA	NA	NA
>prophage 4
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	2756919	881762	930898	2756919	transposase,tRNA,protease,holin	Bacillus_virus(22.22%)	43	NA	NA
WP_000121211.1|881762_882710_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_001067041.1|884344_885331_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
WP_000427776.1|885333_886314_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
WP_000593417.1|886306_887269_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001180271.1|887280_888162_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_094409958.1|888250_889818_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_020967619.1|890113_891760_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.7	4.1e-291
WP_000448933.1|891786_892776_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|893070_893466_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|893836_894556_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959276.1|894676_895663_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082722.1|895710_897519_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	9.3e-47
WP_000896691.1|897978_898785_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214067.1|898807_899173_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224620.1|899276_899870_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|900055_900403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|900419_901055_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|901071_901881_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669938.1|901877_902732_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062404.1|902752_904138_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395156.1|904147_905992_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|906269_907040_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933110.1|907234_908320_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570704.1|908661_910230_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889176.1|910372_911131_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060544.1|911296_912022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000355329.1|912023_912875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600387.1|913617_914127_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154224.1|914239_915430_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258649.1|915407_916583_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340133.1|917014_918499_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001794242.1|918479_918740_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049957.1|918739_920302_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_000928413.1|920603_921407_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001794169.1|921625_923950_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	26.8	4.0e-10
WP_000021872.1|923966_925325_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414169.1|925463_926975_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|927463_928033_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876825.1|928242_928461_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|928541_929528_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|929726_929903_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|929917_930520_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|930820_930898_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
>prophage 5
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	2756919	967766	976239	2756919		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861570.1|967766_968249_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010391.1|968235_969360_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174050.1|969363_970068_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
WP_000848351.1|970067_970331_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666808.1|970332_971004_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032734.1|970996_973186_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
WP_000483708.1|973164_974649_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000030814.1|974641_975670_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
WP_000238673.1|975672_976239_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 6
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	2756919	1425384	1509936	2756919	tRNA,tail,protease,portal,capsid,integrase,terminase,holin,head	Staphylococcus_phage(66.67%)	100	1460149:1460177	1504306:1504334
WP_000858795.1|1425384_1426677_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
WP_000525060.1|1426998_1429692_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049917.1|1429715_1430687_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361536.1|1430673_1431876_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	1.4e-35
WP_000690024.1|1431880_1433023_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839927.1|1433266_1433584_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1433919_1434600_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154479.1|1434671_1435259_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005208.1|1435248_1435824_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	4.6e-08
WP_000389521.1|1435837_1437082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245891.1|1437088_1438387_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776318.1|1438396_1439461_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269937.1|1439486_1440653_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	1.5e-34
WP_000442480.1|1441121_1441571_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096481.1|1441662_1442622_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774688.1|1442623_1443349_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1443351_1443924_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1444354_1444627_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161753.1|1444797_1445796_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1445812_1447123_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133953.1|1447344_1448520_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001791199.1|1448776_1448968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791200.1|1449084_1449201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644393.1|1449231_1449891_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681744.1|1449967_1450936_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1451050_1452037_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_016186859.1|1452197_1452284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069298.1|1452421_1453882_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902107.1|1454034_1455414_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	2.9e-56
WP_001163814.1|1455403_1456357_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1456464_1456713_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186908.1|1456818_1457364_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001799520.1|1457642_1457807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913238.1|1458977_1459883_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000470336.1|1459972_1460158_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
1460149:1460177	attL	AAATAAACATATCATCATAATGAGATGGT	NA	NA	NA	NA
WP_025173859.1|1460398_1461391_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	1.9e-182
WP_000239544.1|1461386_1462325_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PF61	Staphylococcus_phage	100.0	1.7e-180
WP_000909207.1|1464637_1466092_-	N-acetylmuramoyl-L-alanine amidase	NA	M1TB12	Staphylococcus_phage	100.0	3.4e-289
WP_000339141.1|1466102_1466405_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000340978.1|1466530_1466905_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	81.5	7.8e-33
WP_001262620.1|1466960_1467248_-	hypothetical protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
WP_001000058.1|1467293_1467446_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_020967630.1|1467438_1471221_-	structural protein	NA	A0A1X9H096	Staphylococcus_phage	98.2	0.0e+00
WP_001154327.1|1471236_1472727_-|tail	phage tail family protein	tail	D2JLF8	Staphylococcus_phage	100.0	8.2e-299
WP_000570353.1|1477435_1477558_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_000442601.1|1477617_1478064_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570652.1|1478128_1479082_-	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000611452.1|1479082_1479463_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
WP_000501244.1|1479459_1479837_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000975314.1|1479836_1480172_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177484.1|1480158_1480491_-|head,tail	phage head-tail connector protein	head,tail	A7TWQ4	Staphylococcus_phage	100.0	2.1e-58
WP_001252099.1|1480499_1480658_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849950.1|1480693_1481941_-|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_000032525.1|1482028_1482613_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000511063.1|1482605_1483856_-|portal	phage portal protein	portal	A0ZS41	Staphylococcus_virus	99.8	9.7e-237
WP_000365300.1|1483861_1484062_-	hypothetical protein	NA	D2JLE5	Staphylococcus_phage	100.0	1.0e-26
WP_000133304.1|1484075_1485770_-|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000919026.1|1485772_1486240_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|1486369_1486714_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406191.1|1486728_1487181_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
WP_000282748.1|1487295_1487766_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.7e-72
WP_001794311.1|1487788_1487989_-	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
WP_000595238.1|1487988_1488138_-	transcriptional activator RinB	NA	A7TWB4	Staphylococcus_phage	100.0	4.8e-18
WP_000483477.1|1488130_1488367_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000195831.1|1488391_1488628_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
WP_000185638.1|1488664_1489192_-	dUTP pyrophosphatase	NA	A7TWB1	Staphylococcus_phage	100.0	7.8e-95
WP_001065062.1|1489184_1489433_-	DUF1024 family protein	NA	A7TWB0	Staphylococcus_phage	100.0	1.8e-38
WP_001794768.1|1489425_1489797_-	hypothetical protein	NA	A0ZS31	Staphylococcus_virus	100.0	2.9e-64
WP_001126843.1|1489805_1490054_-	hypothetical protein	NA	A7TWA8	Staphylococcus_phage	100.0	1.0e-41
WP_001140284.1|1490054_1490426_-	hypothetical protein	NA	A7TWN6	Staphylococcus_phage	100.0	5.0e-56
WP_001187231.1|1490426_1490612_-	DUF3113 family protein	NA	A7YGR8	Staphylococcus_virus	100.0	2.4e-27
WP_000049784.1|1490616_1491021_-	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	100.0	7.1e-72
WP_001123666.1|1491031_1491253_-	DUF3269 family protein	NA	A7YGR3	Staphylococcus_virus	100.0	1.7e-35
WP_000237153.1|1491265_1491427_-	hypothetical protein	NA	D2JGK6	Staphylococcus_phage	100.0	4.5e-22
WP_000803065.1|1491420_1492200_-	ATP-binding protein	NA	W5RAN3	Staphylococcus_phage	100.0	1.2e-144
WP_000190224.1|1492209_1492980_-	conserved phage C-terminal domain-containing protein	NA	W5R8N2	Staphylococcus_phage	100.0	1.4e-116
WP_000371250.1|1493044_1493902_+	DUF4393 domain-containing protein	NA	Q4ZBL8	Staphylococcus_phage	100.0	9.5e-159
WP_001199439.1|1494007_1494679_-	hypothetical protein	NA	A7TWM9	Staphylococcus_phage	100.0	2.0e-127
WP_000704708.1|1494691_1495243_-	hypothetical protein	NA	W5R977	Staphylococcus_phage	100.0	3.4e-101
WP_001288250.1|1495272_1496046_-	AAA family ATPase	NA	A0ZS20	Staphylococcus_virus	100.0	2.1e-141
WP_000002519.1|1496045_1496525_-	siphovirus Gp157 family protein	NA	A0ZS19	Staphylococcus_virus	100.0	4.0e-82
WP_000291065.1|1496539_1496800_-	DUF1108 family protein	NA	A7YGQ1	Staphylococcus_virus	100.0	6.8e-44
WP_000165368.1|1496804_1497107_-	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	93.0	1.1e-45
WP_001285954.1|1497201_1497363_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_000034801.1|1497374_1497638_-	helix-turn-helix domain-containing protein	NA	A0ZS16	Staphylococcus_virus	100.0	3.3e-46
WP_001038398.1|1497667_1497886_-	hypothetical protein	NA	A0A068A2A3	Staphylococcus_phage	100.0	8.6e-32
WP_001025595.1|1497882_1498209_-	hypothetical protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
WP_001294156.1|1498535_1498775_-	hypothetical protein	NA	A0ZS12	Staphylococcus_virus	100.0	2.9e-33
WP_154271314.1|1498851_1498989_-	hypothetical protein	NA	A0ZS11	Staphylococcus_virus	100.0	2.2e-17
WP_001148617.1|1499280_1500033_-	phage antirepressor KilAC domain-containing protein	NA	G4KNN1	Staphylococcus_phage	100.0	1.1e-139
WP_000639925.1|1500048_1500291_-	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	100.0	2.8e-39
WP_001083969.1|1500454_1501171_+	helix-turn-helix domain-containing protein	NA	A0A2I6PDG6	Staphylococcus_phage	100.0	2.0e-130
WP_000755719.1|1501225_1501660_+	hypothetical protein	NA	A0A2D1G561	Staphylococcus_phage	100.0	2.8e-26
WP_000449656.1|1501688_1502084_+	hypothetical protein	NA	A0ZS06	Staphylococcus_virus	100.0	1.7e-70
WP_001166482.1|1502283_1502907_-	hypothetical protein	NA	B7T0F3	Staphylococcus_virus	99.5	9.8e-105
WP_000264191.1|1503016_1504222_+|integrase	site-specific integrase	integrase	M1RZA8	Staphylococcus_phage	100.0	1.0e-222
WP_041206553.1|1504264_1506298_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	44.1	1.1e-38
1504306:1504334	attR	AAATAAACATATCATCATAATGAGATGGT	NA	NA	NA	NA
WP_001794318.1|1506279_1507227_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987777.1|1507478_1509230_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_000064079.1|1509210_1509936_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	4.6e-45
>prophage 7
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	2756919	1567780	1576092	2756919	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1567780_1568566_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924211.1|1568691_1569582_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062173.1|1569591_1570938_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
WP_000683921.1|1571051_1572152_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_000624581.1|1572154_1572832_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283058.1|1572962_1574069_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217253.1|1574292_1576092_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 8
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	2756919	1645530	1656494	2756919	transposase,tRNA	uncultured_Mediterranean_phage(42.86%)	8	NA	NA
WP_000364542.1|1645530_1646049_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595001.1|1646070_1648344_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
WP_000749802.1|1648546_1650826_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000277741.1|1651076_1652723_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_001160682.1|1653021_1653282_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1653300_1654440_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019169.1|1654462_1655488_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1655489_1656494_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	2756919	1779633	1848023	2756919	tRNA,protease	Staphylococcus_phage(93.02%)	62	NA	NA
WP_001050518.1|1779633_1785741_-	YSIRK signal domain/LPXTG anchor domain surface protein	NA	A0A2H4PQU6	Staphylococcus_phage	68.3	8.7e-222
WP_000836472.1|1786064_1786376_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_001794349.1|1786397_1788815_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
WP_001025064.1|1789103_1790285_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|1790394_1791348_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764425.1|1791344_1791908_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
WP_000757543.1|1792026_1792428_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1793001_1793829_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1793831_1793951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196350.1|1794062_1795064_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	98.8	1.9e-182
WP_001008553.1|1795185_1795650_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	98.1	4.9e-69
WP_001159032.1|1795662_1796844_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493891.1|1796854_1797487_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
WP_000077342.1|1797493_1798537_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.9e-195
WP_001261683.1|1799017_1800520_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|1801161_1801476_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989104.1|1801475_1802768_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
WP_001032833.1|1802854_1803709_-	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1803984_1804209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671059.1|1804407_1804878_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
WP_001152695.1|1804990_1805434_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001045397.1|1805420_1805864_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	76.7	7.1e-49
WP_001168914.1|1806161_1806797_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492901.1|1806963_1807584_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1807982_1808696_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091448.1|1808954_1809257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1809511_1809877_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623481.1|1809873_1810227_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
WP_000453316.1|1810476_1811310_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.2e-158
WP_000366165.1|1811521_1812430_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933819.1|1812554_1813748_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109909.1|1814119_1815712_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001801476.1|1816004_1816751_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.2	3.3e-139
WP_000672010.1|1816755_1817229_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	9.5e-84
WP_000718107.1|1817294_1817552_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778539.1|1817548_1818550_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
WP_000348372.1|1818554_1820033_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
WP_016186903.1|1820191_1820647_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	3.5e-75
WP_001794016.1|1820949_1821600_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	1.0e-51
WP_000070654.1|1821680_1822676_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	3.8e-74
WP_000669038.1|1822751_1823378_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
WP_000627550.1|1823418_1823763_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
WP_000414222.1|1823860_1824433_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_001093574.1|1824581_1825949_-	FRG domain-containing protein	NA	NA	NA	NA	NA
WP_000125075.1|1825948_1826518_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
WP_000747804.1|1826710_1827157_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001801861.1|1827607_1827703_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791232.1|1827825_1827927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037039.1|1828101_1828545_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000731421.1|1828544_1828988_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000182551.1|1829954_1832375_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_001036446.1|1832500_1832878_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000619920.1|1833087_1833537_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000095390.1|1835205_1835505_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_000028587.1|1838768_1840325_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	2.2e-286
WP_001038742.1|1840687_1841407_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
WP_001038734.1|1841576_1842293_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.1	6.6e-129
WP_001038730.1|1842456_1843173_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	64.7	2.4e-86
WP_001038766.1|1843339_1844056_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	62.6	5.5e-83
WP_001039022.1|1844179_1844899_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
WP_000595635.1|1845913_1846429_+	membrane protein	NA	NA	NA	NA	NA
WP_000711497.1|1846676_1848023_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	51.3	6.7e-66
>prophage 10
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	2756919	1935900	2032800	2756919	tRNA,protease,tail,portal,capsid,integrase,terminase,holin,head	Staphylococcus_phage(72.29%)	119	1933788:1933807	2026454:2026473
1933788:1933807	attL	TTGGGGCCCCACCCCAACTT	NA	NA	NA	NA
WP_000027924.1|1935900_1937358_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|1937359_1937662_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957023.1|1938028_1939567_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|1939655_1940855_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774552.1|1940867_1942871_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	9.8e-114
WP_000992924.1|1942874_1945067_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272063.1|1945063_1945756_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1945938_1946241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1946349_1947645_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827737.1|1948495_1949662_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434531.1|1949692_1950016_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|1950309_1950483_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1950463_1951066_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040861.1|1951335_1952157_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284434.1|1952149_1953619_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.5	8.5e-107
WP_000897633.1|1953802_1954879_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177832.1|1954898_1955693_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_031788442.1|1955764_1955872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323171.1|1955882_1957445_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275719.1|1957649_1958747_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	8.7e-48
WP_000149686.1|1959119_1959680_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1959732_1960662_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|1960855_1961029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021224.1|1961080_1962460_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|1962579_1963608_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1963878_1964280_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1964336_1964510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188074.1|1964960_1966001_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713064.1|1966057_1966900_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033968.1|1966896_1967454_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966289.1|1967513_1968038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000182842.1|1968158_1968722_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221650.1|1968785_1969526_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|1969525_1970398_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645732.1|1970394_1971075_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991315.1|1971075_1971972_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|1971968_1972349_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681966.1|1972606_1972783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1973024_1973123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068528.1|1973322_1974609_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669728.1|1974879_1976949_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|1977921_1978101_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1978411_1978672_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1978724_1979075_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|1979757_1980207_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000919350.1|1981285_1981777_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|1981967_1982723_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1982734_1982989_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|1983040_1983148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1983200_1983377_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|1983526_1983823_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|1983880_1984168_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|1984214_1984367_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|1984356_1988142_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567408.1|1988157_1989642_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001794405.1|1989638_1994168_-|tail	phage tail tape measure protein	tail	Q6R868	Staphylococcus_virus	97.3	0.0e+00
WP_001549167.1|1994224_1994362_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096355.1|1994412_1994763_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1994812_1995037_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268736.1|1995078_1995723_-|tail	phage tail protein	tail	Q6R871	Staphylococcus_virus	100.0	6.5e-120
WP_000565498.1|1995723_1996131_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114341.1|1996127_1996532_-	HK97 gp10 family phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000755150.1|1996528_1996891_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1996874_1997159_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238240.1|1997148_1997433_-	hypothetical protein	NA	A0A1W6JPL8	Staphylococcus_phage	100.0	2.3e-45
WP_000154552.1|1997452_1998598_-|capsid	phage major capsid protein	capsid	C8CH21	Staphylococcus_phage	100.0	7.3e-215
WP_000642728.1|1998621_1999359_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025266.1|1999342_2000530_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	99.7	3.0e-219
WP_000625096.1|2000545_2002207_-|terminase	terminase large subunit	terminase	A0A075M4D3	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2002203_2002548_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2002677_2002977_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2003208_2003625_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2003652_2003853_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|2003852_2004002_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2003998_2004385_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2004381_2004588_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000185695.1|2004624_2005161_-	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	99.4	7.9e-95
WP_000714405.1|2005153_2005324_-	hypothetical protein	NA	A0A0H3U4U6	Staphylococcus_phage	96.4	4.1e-21
WP_001065126.1|2005310_2005565_-	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	98.8	1.4e-38
WP_000193482.1|2005557_2005989_-	hypothetical protein	NA	Q4ZBT4	Staphylococcus_virus	96.5	3.4e-72
WP_000979207.1|2005985_2006369_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	54.8	4.3e-26
WP_000983948.1|2006368_2006560_-	hypothetical protein	NA	Q4ZDX2	Staphylococcus_virus	95.2	6.2e-26
WP_000694060.1|2006556_2006982_-	hypothetical protein	NA	B7T0H5	Staphylococcus_virus	81.0	2.6e-56
WP_001126837.1|2006996_2007245_-	hypothetical protein	NA	A0A2I6PDI0	Staphylococcus_phage	98.8	9.4e-43
WP_001140295.1|2007245_2007617_-	hypothetical protein	NA	C5I648	Staphylococcus_phage	96.7	1.5e-55
WP_001187241.1|2007617_2007803_-	DUF3113 family protein	NA	A0A2H4PQI8	Staphylococcus_phage	95.1	7.8e-26
WP_000049776.1|2007807_2008212_-	DUF1064 domain-containing protein	NA	Q6R835	Staphylococcus_virus	97.8	5.1e-70
WP_001123683.1|2008221_2008443_-	DUF3269 family protein	NA	A0A2H4PQI9	Staphylococcus_phage	95.9	2.1e-33
WP_000237154.1|2008456_2008618_-	hypothetical protein	NA	A0A0H4IU12	Staphylococcus_phage	100.0	1.0e-21
WP_000803046.1|2008611_2009385_-	ATP-binding protein	NA	A0A2H4PQI3	Staphylococcus_phage	99.2	5.1e-143
WP_000504988.1|2009394_2010198_-	phage replisome organizer N-terminal domain-containing protein	NA	A0A2H4JCF5	uncultured_Caudovirales_phage	100.0	1.1e-121
WP_001199441.1|2010950_2011616_-	hypothetical protein	NA	A7TWM9	Staphylococcus_phage	100.0	1.1e-125
WP_000704713.1|2011628_2012183_-	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	1.0e-100
WP_000139741.1|2012212_2012992_-	ATP-binding protein	NA	Q9G028	Staphylococcus_virus	99.6	7.4e-142
WP_000815401.1|2012984_2013206_-	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_001794414.1|2013215_2013476_-	DUF1108 family protein	NA	G4KNN5	Staphylococcus_phage	98.8	9.9e-43
WP_000829613.1|2013480_2013798_-	hypothetical protein	NA	Q4ZAS8	Staphylococcus_virus	100.0	3.9e-33
WP_000066016.1|2013886_2014048_-	DUF1270 family protein	NA	Q4ZAZ7	Staphylococcus_virus	98.1	1.2e-19
WP_001120198.1|2014044_2014365_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	99.1	5.6e-56
WP_000275058.1|2014423_2015056_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|2015070_2015211_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148861.1|2015241_2015439_-	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_001148647.1|2015454_2016207_-	phage antirepressor KilAC domain-containing protein	NA	A0A0E3T9K5	Staphylococcus_phage	98.8	3.1e-137
WP_001794416.1|2016236_2016458_-	helix-turn-helix transcriptional regulator	NA	Q4ZB05	Staphylococcus_virus	94.4	2.3e-32
WP_000901359.1|2016612_2017245_+	helix-turn-helix domain-containing protein	NA	Q4ZB06	Staphylococcus_virus	90.9	1.4e-103
WP_000837517.1|2017425_2018124_+	potassium channel family protein	NA	A0A1B0Y2S3	Lactobacillus_phage	29.8	4.4e-13
WP_000694772.1|2018279_2018462_+	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
WP_001286807.1|2018597_2020256_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A2H4JAL2	uncultured_Caudovirales_phage	81.7	1.7e-257
WP_000857187.1|2020311_2021337_+|integrase	site-specific integrase	integrase	A0A0H3U2W9	Staphylococcus_phage	99.1	2.3e-175
WP_000595617.1|2022485_2023505_-	leukocidin/hemolysin toxin family protein	NA	A0A2I6PEU3	Staphylococcus_phage	39.6	3.4e-54
WP_000791398.1|2023526_2024582_-	leukocidin family pore-forming toxin	NA	A0A2I6PER8	Staphylococcus_phage	34.6	7.9e-38
WP_000206618.1|2025013_2026237_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045062.1|2026675_2027983_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
2026454:2026473	attR	TTGGGGCCCCACCCCAACTT	NA	NA	NA	NA
WP_001573771.1|2028560_2028902_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	46.0	4.1e-20
WP_025173856.1|2028891_2029188_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	39.4	3.3e-10
WP_000201397.1|2029184_2029364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000240651.1|2029905_2031522_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
WP_000917289.1|2031597_2031882_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197638.1|2032056_2032800_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
