assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000164965.1_ASM16496v1	NC_014616	Bifidobacterium bifidum S17, complete sequence	1	225803-228741	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csn2,cas2,cas1,cas9,WYL,cas3,DEDDh,csa3	Type II-B,Type II-C,Type II-A	GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC,GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC,GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	44,44,35	44	TypeII-B,TypeII-C,TypeII-A	csn2,cas2,cas1,cas9,WYL,cas3,DEDDh,csa3	NA|182aa|up_0|NC_014616.1_224169_224715_-,NA	NA|160aa|up_9|NC_014616.1_216553_217033_-	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	NA|214aa|up_8|NC_014616.1_217264_217906_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|85aa|up_7|NC_014616.1_218071_218326_+	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|186aa|up_6|NC_014616.1_218400_218958_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|273aa|up_5|NC_014616.1_219120_219939_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|83aa|up_4|NC_014616.1_220088_220337_+	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein	NA|141aa|up_3|NC_014616.1_220852_221275_+	PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional	NA|391aa|up_2|NC_014616.1_221655_222828_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|308aa|up_1|NC_014616.1_222830_223754_+	pfam12183, NotI, Restriction endonuclease NotI	NA|182aa|up_0|NC_014616.1_224169_224715_-	NA	csn2|221aa|down_0|NC_014616.1_228768_229431_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NC_014616.1_229427_229733_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|297aa|down_2|NC_014616.1_229723_230614_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1421aa|down_3|NC_014616.1_230745_235008_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|257aa|down_4|NC_014616.1_236240_237011_+	pfam16403, DUF5011, Domain of unknown function (DUF5011)	NA|331aa|down_5|NC_014616.1_237246_238239_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|96aa|down_6|NC_014616.1_238626_238914_-	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|177aa|down_7|NC_014616.1_239117_239648_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|628aa|down_8|NC_014616.1_239859_241743_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|647aa|down_9|NC_014616.1_241793_243734_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCF_000164965.1_ASM16496v1	NC_014616	Bifidobacterium bifidum S17, complete sequence	2	1259023-1259108	2	CRISPRCasFinder	no		csn2,cas2,cas1,cas9,WYL,cas3,DEDDh,csa3	Orphan	CGCGCGCACTTAGGAACGCAAAC	23	0	0	NA	NA	NA	1	1	Orphan	csn2,cas2,cas1,cas9,WYL,cas3,DEDDh,csa3	NA|118aa|up_5|NC_014616.1_1254396_1254750_-,NA|233aa|down_0|NC_014616.1_1259266_1259965_+,NA|321aa|down_2|NC_014616.1_1260761_1261724_+,NA|314aa|down_4|NC_014616.1_1263321_1264263_+,NA|52aa|down_5|NC_014616.1_1264185_1264341_-	NA|284aa|up_9|NC_014616.1_1251748_1252600_-	PRK01060, PRK01060, endonuclease IV; Provisional	NA|120aa|up_8|NC_014616.1_1252671_1253031_-	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|213aa|up_7|NC_014616.1_1253237_1253876_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|166aa|up_6|NC_014616.1_1253909_1254407_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|118aa|up_5|NC_014616.1_1254396_1254750_-	NA	NA|87aa|up_4|NC_014616.1_1255276_1255537_-	pfam12535, Nudix_N, Hydrolase of X-linked nucleoside diphosphate N terminal	NA|104aa|up_3|NC_014616.1_1256233_1256545_-	pfam04073, tRNA_edit, Aminoacyl-tRNA editing domain	NA|321aa|up_2|NC_014616.1_1256528_1257491_-	cd06553, ASCH_Ef3133_like, ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133	NA|108aa|up_1|NC_014616.1_1257742_1258066_+	smart00387, HATPase_c, Histidine kinase-like ATPases	NA|232aa|up_0|NC_014616.1_1258170_1258866_+	pfam02586, SRAP, SOS response associated peptidase (SRAP)	NA|233aa|down_0|NC_014616.1_1259266_1259965_+	NA	NA|133aa|down_1|NC_014616.1_1259880_1260279_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|321aa|down_2|NC_014616.1_1260761_1261724_+	NA	NA|292aa|down_3|NC_014616.1_1262067_1262943_-	TIGR00900, multidrug_transporter, H+ Antiporter protein	NA|314aa|down_4|NC_014616.1_1263321_1264263_+	NA	NA|52aa|down_5|NC_014616.1_1264185_1264341_-	NA	NA|184aa|down_6|NC_014616.1_1264565_1265117_+	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV	NA|201aa|down_7|NC_014616.1_1265092_1265695_-	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|340aa|down_8|NC_014616.1_1265741_1266761_-	pfam04892, VanZ, VanZ like family	NA|274aa|down_9|NC_014616.1_1267051_1267873_+	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators
GCF_000164965.1_ASM16496v1	NC_014616	Bifidobacterium bifidum S17, complete sequence	3	1778179-1778285	3	CRISPRCasFinder	no		csn2,cas2,cas1,cas9,WYL,cas3,DEDDh,csa3	Orphan	CGTCACTGTGTGCGTGGACGCACAGCGTGACGCA	34	0	0	NA	NA	NA	1	1	Orphan	csn2,cas2,cas1,cas9,WYL,cas3,DEDDh,csa3	NA|67aa|up_9|NC_014616.1_1761780_1761981_-,NA|30aa|up_3|NC_014616.1_1774293_1774383_-,NA|210aa|up_2|NC_014616.1_1774507_1775137_-,NA|325aa|down_4|NC_014616.1_1784786_1785761_+	NA|67aa|up_9|NC_014616.1_1761780_1761981_-	NA	NA|559aa|up_8|NC_014616.1_1762491_1764168_+	cd05801, PGM_like3, This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily	NA|475aa|up_7|NC_014616.1_1764548_1765973_+	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|1961aa|up_6|NC_014616.1_1766085_1771968_-	pfam07555, NAGidase, beta-N-acetylglucosaminidase	NA|360aa|up_5|NC_014616.1_1772198_1773278_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|233aa|up_4|NC_014616.1_1773427_1774126_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|30aa|up_3|NC_014616.1_1774293_1774383_-	NA	NA|210aa|up_2|NC_014616.1_1774507_1775137_-	NA	NA|467aa|up_1|NC_014616.1_1775222_1776623_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|420aa|up_0|NC_014616.1_1776764_1778024_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|409aa|down_0|NC_014616.1_1778304_1779531_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|195aa|down_1|NC_014616.1_1779618_1780203_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|989aa|down_2|NC_014616.1_1780507_1783474_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|343aa|down_3|NC_014616.1_1783683_1784712_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|325aa|down_4|NC_014616.1_1784786_1785761_+	NA	NA|267aa|down_5|NC_014616.1_1787368_1788169_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|728aa|down_6|NC_014616.1_1788290_1790474_-	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|301aa|down_7|NC_014616.1_1790659_1791562_-	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|1607aa|down_8|NC_014616.1_1791836_1796657_+	cd06564, GH20_DspB_LnbB-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins	NA|171aa|down_9|NC_014616.1_1797055_1797568_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated
