assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000165905.1_ASM16590v1	NC_014638	Bifidobacterium bifidum PRL2010, complete sequence	1	1298481-1298566	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3	Orphan	CGCGCGCACTTAGGAACGCAAAC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3	NA|118aa|up_6|NC_014638.1_1293913_1294267_-,NA|62aa|up_3|NC_014638.1_1295713_1295899_-,NA|233aa|down_0|NC_014638.1_1298724_1299423_+,NA|321aa|down_2|NC_014638.1_1300219_1301182_+,NA|159aa|down_3|NC_014638.1_1302363_1302840_+,NA|314aa|down_4|NC_014638.1_1302776_1303718_+	NA|120aa|up_9|NC_014638.1_1292197_1292557_-	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|213aa|up_8|NC_014638.1_1292752_1293391_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|166aa|up_7|NC_014638.1_1293426_1293924_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|118aa|up_6|NC_014638.1_1293913_1294267_-	NA	NA|82aa|up_5|NC_014638.1_1294797_1295043_-	pfam12535, Nudix_N, Hydrolase of X-linked nucleoside diphosphate N terminal	NA|74aa|up_4|NC_014638.1_1295157_1295379_-	cd07576, R-amidase_like, Pseudomonas sp	NA|62aa|up_3|NC_014638.1_1295713_1295899_-	NA	NA|321aa|up_2|NC_014638.1_1295882_1296845_-	cd06553, ASCH_Ef3133_like, ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133	NA|65aa|up_1|NC_014638.1_1297329_1297524_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|232aa|up_0|NC_014638.1_1297628_1298324_+	pfam02586, SRAP, SOS response associated peptidase (SRAP)	NA|233aa|down_0|NC_014638.1_1298724_1299423_+	NA	NA|133aa|down_1|NC_014638.1_1299338_1299737_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|321aa|down_2|NC_014638.1_1300219_1301182_+	NA	NA|159aa|down_3|NC_014638.1_1302363_1302840_+	NA	NA|314aa|down_4|NC_014638.1_1302776_1303718_+	NA	NA|184aa|down_5|NC_014638.1_1304020_1304572_+	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV	NA|201aa|down_6|NC_014638.1_1304547_1305150_-	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|340aa|down_7|NC_014638.1_1305196_1306216_-	pfam04892, VanZ, VanZ like family	NA|274aa|down_8|NC_014638.1_1306505_1307327_+	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators	NA|135aa|down_9|NC_014638.1_1307505_1307910_-	COG3576, COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
GCF_000165905.1_ASM16590v1	NC_014638	Bifidobacterium bifidum PRL2010, complete sequence	2	1389595-1389730	1	PILER-CR	no		WYL,cas3,DEDDh,csa3	Orphan	CGCCATCGTGCTTGCACGTGCAATGGTG	28	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,DEDDh,csa3	NA,NA	NA|216aa|up_9|NC_014638.1_1379426_1380074_-	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|142aa|up_8|NC_014638.1_1380451_1380877_+	PRK09218, PRK09218, peptide deformylase; Validated	NA|117aa|up_7|NC_014638.1_1380948_1381299_-	TIGR02057, Phosphoadenosine_phosphosulfate_reductase, phosphoadenosine phosphosulfate reductase, thioredoxin dependent	NA|70aa|up_6|NC_014638.1_1381428_1381638_-	pfam09855, zinc_ribbon_13, Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)	NA|123aa|up_5|NC_014638.1_1382098_1382467_-	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein	NA|196aa|up_4|NC_014638.1_1382671_1383259_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|414aa|up_3|NC_014638.1_1383531_1384773_-	cd03408, SPFH_like_u1, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|491aa|up_2|NC_014638.1_1384950_1386423_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|147aa|up_1|NC_014638.1_1386823_1387264_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|557aa|up_0|NC_014638.1_1387446_1389117_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|289aa|down_0|NC_014638.1_1390076_1390943_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|122aa|down_1|NC_014638.1_1391232_1391598_+	PRK11770, PRK11770, YccF domain-containing protein	NA|243aa|down_2|NC_014638.1_1391632_1392361_-	PRK07922, PRK07922, amino-acid N-acetyltransferase	NA|439aa|down_3|NC_014638.1_1392946_1394263_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|365aa|down_4|NC_014638.1_1394656_1395751_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|401aa|down_5|NC_014638.1_1395987_1397190_-	PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional	NA|227aa|down_6|NC_014638.1_1397371_1398052_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|381aa|down_7|NC_014638.1_1398044_1399187_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|345aa|down_8|NC_014638.1_1399183_1400218_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|329aa|down_9|NC_014638.1_1400210_1401197_-	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)
GCF_000165905.1_ASM16590v1	NC_014638	Bifidobacterium bifidum PRL2010, complete sequence	3	1805696-1805801	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3	Orphan	CGTCACTGTGTGCGTGGACGCACAGCGTGACGC	33	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3	NA|67aa|up_9|NC_014638.1_1789296_1789497_-,NA|30aa|up_3|NC_014638.1_1801810_1801900_-,NA|210aa|up_2|NC_014638.1_1802024_1802654_-,NA|325aa|down_4|NC_014638.1_1812322_1813297_+	NA|67aa|up_9|NC_014638.1_1789296_1789497_-	NA	NA|559aa|up_8|NC_014638.1_1790008_1791685_+	cd05801, PGM_like3, This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily	NA|475aa|up_7|NC_014638.1_1792065_1793490_+	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|1961aa|up_6|NC_014638.1_1793602_1799485_-	pfam07555, NAGidase, beta-N-acetylglucosaminidase	NA|360aa|up_5|NC_014638.1_1799715_1800795_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|233aa|up_4|NC_014638.1_1800944_1801643_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|30aa|up_3|NC_014638.1_1801810_1801900_-	NA	NA|210aa|up_2|NC_014638.1_1802024_1802654_-	NA	NA|467aa|up_1|NC_014638.1_1802739_1804140_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|420aa|up_0|NC_014638.1_1804281_1805541_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|409aa|down_0|NC_014638.1_1805821_1807048_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|195aa|down_1|NC_014638.1_1807156_1807741_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|989aa|down_2|NC_014638.1_1808043_1811010_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|343aa|down_3|NC_014638.1_1811219_1812248_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|325aa|down_4|NC_014638.1_1812322_1813297_+	NA	NA|267aa|down_5|NC_014638.1_1814904_1815705_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|728aa|down_6|NC_014638.1_1815826_1818010_-	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|301aa|down_7|NC_014638.1_1818195_1819098_-	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|1607aa|down_8|NC_014638.1_1819372_1824193_+	cd06564, GH20_DspB_LnbB-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins	NA|171aa|down_9|NC_014638.1_1824591_1825104_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated
GCF_000165905.1_ASM16590v1	NC_014638	Bifidobacterium bifidum PRL2010, complete sequence	4	2188970-2189056	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3	Orphan	GTGCGCGCACTTAGAAACGCAAAC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3	NA|304aa|up_0|NC_014638.1_2187695_2188607_-,NA|760aa|down_8|NC_014638.1_2199798_2202078_+	NA|984aa|up_9|NC_014638.1_2167292_2170244_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|333aa|up_8|NC_014638.1_2170873_2171872_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|472aa|up_7|NC_014638.1_2171982_2173398_-	pfam13224, DUF4032, Domain of unknown function (DUF4032)	NA|287aa|up_6|NC_014638.1_2173388_2174249_-	pfam17802, SpaA, Prealbumin-like fold domain	NA|328aa|up_5|NC_014638.1_2174232_2175216_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|531aa|up_4|NC_014638.1_2175296_2176889_-	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain	NA|2575aa|up_3|NC_014638.1_2176953_2184678_-	pfam05738, Cna_B, Cna protein B-type domain	NA|184aa|up_2|NC_014638.1_2185356_2185908_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|376aa|up_1|NC_014638.1_2186093_2187221_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|304aa|up_0|NC_014638.1_2187695_2188607_-	NA	NA|824aa|down_0|NC_014638.1_2189156_2191628_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|325aa|down_1|NC_014638.1_2191777_2192752_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|505aa|down_2|NC_014638.1_2193371_2194886_+	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown]	NA|317aa|down_3|NC_014638.1_2194897_2195848_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|347aa|down_4|NC_014638.1_2195844_2196885_+	PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|209aa|down_5|NC_014638.1_2196926_2197553_+	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator	NA|471aa|down_6|NC_014638.1_2197644_2199057_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|218aa|down_7|NC_014638.1_2199148_2199802_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|760aa|down_8|NC_014638.1_2199798_2202078_+	NA	NA|1479aa|down_9|NC_014638.1_2202074_2206511_+	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins
