assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	1	897463-897535	1	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	GACCACGGTCAGGGTGGTTATGGCCAGC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA|148aa|up_3|NC_014666.1_893882_894326_+,NA|91aa|up_1|NC_014666.1_895298_895571_-,NA|206aa|down_8|NC_014666.1_906908_907526_-	NA|337aa|up_9|NC_014666.1_885703_886714_+	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|447aa|up_8|NC_014666.1_886745_888086_-	pfam07786, DUF1624, Protein of unknown function (DUF1624)	NA|135aa|up_7|NC_014666.1_888413_888818_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|627aa|up_6|NC_014666.1_889282_891163_+	TIGR01394, GTP-binding_protein_TypA/BipA_homolog, GTP-binding protein TypA/BipA	NA|342aa|up_5|NC_014666.1_891669_892695_+	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|293aa|up_4|NC_014666.1_892751_893630_+	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|148aa|up_3|NC_014666.1_893882_894326_+	NA	NA|289aa|up_2|NC_014666.1_894435_895302_-	pfam13369, Transglut_core2, Transglutaminase-like superfamily	NA|91aa|up_1|NC_014666.1_895298_895571_-	NA	NA|108aa|up_0|NC_014666.1_895658_895982_+	COG1146, COG1146, Ferredoxin [Energy production and conversion]	NA|279aa|down_0|NC_014666.1_898373_899210_+	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional	NA|357aa|down_1|NC_014666.1_899240_900311_+	PRK13007, PRK13007, succinyl-diaminopimelate desuccinylase; Reviewed	NA|272aa|down_2|NC_014666.1_900636_901452_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|201aa|down_3|NC_014666.1_901464_902067_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|271aa|down_4|NC_014666.1_902075_902888_-	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase	NA|110aa|down_5|NC_014666.1_903285_903615_+	TIGR03544, cell_division_initiation_protein_DivIVA, DivIVA domain	NA|56aa|down_6|NC_014666.1_903899_904067_+	pfam11314, DUF3117, Protein of unknown function (DUF3117)	NA|609aa|down_7|NC_014666.1_904299_906126_+	pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain	NA|206aa|down_8|NC_014666.1_906908_907526_-	NA	NA|221aa|down_9|NC_014666.1_907738_908401_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	2	1305253-1305342	2	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	GGGCCGAGCCGGGTCGCGGCGTCG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA|84aa|up_4|NC_014666.1_1297513_1297765_-,NA|99aa|up_2|NC_014666.1_1299890_1300187_-,NA	NA|344aa|up_9|NC_014666.1_1290810_1291842_+	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional	NA|309aa|up_8|NC_014666.1_1292113_1293040_+	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|129aa|up_7|NC_014666.1_1293305_1293692_+	cd09836, CBS_pair_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains	NA|227aa|up_6|NC_014666.1_1293848_1294529_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|535aa|up_5|NC_014666.1_1294930_1296535_+	PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional	NA|84aa|up_4|NC_014666.1_1297513_1297765_-	NA	NA|260aa|up_3|NC_014666.1_1298161_1298941_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|99aa|up_2|NC_014666.1_1299890_1300187_-	NA	NA|578aa|up_1|NC_014666.1_1300507_1302241_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|617aa|up_0|NC_014666.1_1302322_1304173_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|303aa|down_0|NC_014666.1_1306697_1307606_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|471aa|down_1|NC_014666.1_1307705_1309118_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|199aa|down_2|NC_014666.1_1309224_1309821_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|94aa|down_3|NC_014666.1_1310368_1310650_+	cd13831, HU, histone-like DNA-binding protein HU	NA|736aa|down_4|NC_014666.1_1310741_1312949_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|352aa|down_5|NC_014666.1_1313245_1314301_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|275aa|down_6|NC_014666.1_1316219_1317044_-	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism]	NA|247aa|down_7|NC_014666.1_1317091_1317832_-	TIGR03552, F420_cofC, 2-phospho-L-lactate guanylyltransferase	NA|337aa|down_8|NC_014666.1_1318156_1319167_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|453aa|down_9|NC_014666.1_1319163_1320522_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	3	1685547-1685700	3	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	AGCTGGCCGGCGGCGTCGTAGTCGTAGC	28	0	0	NA	NA	NA	2	2	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA|328aa|up_5|NC_014666.1_1672322_1673306_-,NA|108aa|up_0|NC_014666.1_1683145_1683469_-,NA|211aa|down_1|NC_014666.1_1688821_1689454_-,NA|168aa|down_2|NC_014666.1_1689459_1689963_-	NA|107aa|up_9|NC_014666.1_1668754_1669075_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|473aa|up_8|NC_014666.1_1669141_1670560_-	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|345aa|up_7|NC_014666.1_1670565_1671600_-	cd08241, QOR1, Quinone oxidoreductase (QOR)	NA|208aa|up_6|NC_014666.1_1671635_1672259_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|328aa|up_5|NC_014666.1_1672322_1673306_-	NA	NA|272aa|up_4|NC_014666.1_1673548_1674364_-	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|709aa|up_3|NC_014666.1_1674626_1676753_+	pfam02254, TrkA_N, TrkA-N domain	NA|264aa|up_2|NC_014666.1_1677016_1677808_+	pfam14333, DUF4389, Domain of unknown function (DUF4389)	NA|1520aa|up_1|NC_014666.1_1678106_1682666_+	TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC, C-terminal domain	NA|108aa|up_0|NC_014666.1_1683145_1683469_-	NA	NA|99aa|down_0|NC_014666.1_1688383_1688680_-	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|211aa|down_1|NC_014666.1_1688821_1689454_-	NA	NA|168aa|down_2|NC_014666.1_1689459_1689963_-	NA	NA|251aa|down_3|NC_014666.1_1690358_1691111_-	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|216aa|down_4|NC_014666.1_1691112_1691760_-	pfam12840, HTH_20, Helix-turn-helix domain	NA|637aa|down_5|NC_014666.1_1691905_1693816_+	PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase; Provisional	NA|148aa|down_6|NC_014666.1_1693918_1694362_-	cd14775, TrHb2_O-like, Truncated hemoglobins, group 2 (O); uncharacterized subgroup	NA|136aa|down_7|NC_014666.1_1694385_1694793_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|289aa|down_8|NC_014666.1_1695201_1696068_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|338aa|down_9|NC_014666.1_1696109_1697123_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	4	1854578-1854911	1,4	PILER-CR,CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	CGGCCGA---TCGTAACG------------------AGACGACCGA--AACGAGC,CGGCCGATCGTAACGAGACAACCGA	55,25	0	0	NA	NA	NA:NA	3,4	4	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA|713aa|up_3|NC_014666.1_1849867_1852006_-,NA|67aa|up_2|NC_014666.1_1852093_1852294_-,NA|66aa|up_1|NC_014666.1_1852935_1853133_-,NA|129aa|up_0|NC_014666.1_1853762_1854149_+,NA|447aa|down_2|NC_014666.1_1857661_1859002_-,NA|168aa|down_4|NC_014666.1_1860565_1861069_+,NA|287aa|down_6|NC_014666.1_1862500_1863361_+	NA|417aa|up_9|NC_014666.1_1840448_1841699_-	TIGR04364, methyltran_FxLD, methyltransferase, FxLD system	NA|498aa|up_8|NC_014666.1_1841911_1843405_+	pfam12844, HTH_19, Helix-turn-helix domain	NA|106aa|up_7|NC_014666.1_1843417_1843735_+	pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine dehydratase	NA|310aa|up_6|NC_014666.1_1843955_1844885_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|500aa|up_5|NC_014666.1_1844881_1846381_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|580aa|up_4|NC_014666.1_1847513_1849253_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|713aa|up_3|NC_014666.1_1849867_1852006_-	NA	NA|67aa|up_2|NC_014666.1_1852093_1852294_-	NA	NA|66aa|up_1|NC_014666.1_1852935_1853133_-	NA	NA|129aa|up_0|NC_014666.1_1853762_1854149_+	NA	NA|378aa|down_0|NC_014666.1_1855411_1856545_-	pfam01381, HTH_3, Helix-turn-helix	NA|170aa|down_1|NC_014666.1_1856727_1857237_+	TIGR03917, hypothetical_protein, Frankia-40 domain	NA|447aa|down_2|NC_014666.1_1857661_1859002_-	NA	NA|294aa|down_3|NC_014666.1_1858998_1859880_-	pfam01636, APH, Phosphotransferase enzyme family	NA|168aa|down_4|NC_014666.1_1860565_1861069_+	NA	NA|399aa|down_5|NC_014666.1_1861074_1862271_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|287aa|down_6|NC_014666.1_1862500_1863361_+	NA	NA|305aa|down_7|NC_014666.1_1863378_1864293_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|237aa|down_8|NC_014666.1_1864674_1865385_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|404aa|down_9|NC_014666.1_1865594_1866806_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	5	1888802-1888996	2	PILER-CR	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	CGACAACGTCCAGGTGAAGGACGGCAAGGTCTACCACAACGGAAAGCTGGT	51	0	0	NA	NA	NA	2	2	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA,NA|398aa|down_4|NC_014666.1_1896101_1897295_-	NA|342aa|up_9|NC_014666.1_1877984_1879010_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|307aa|up_8|NC_014666.1_1879006_1879927_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|300aa|up_7|NC_014666.1_1879923_1880823_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|274aa|up_6|NC_014666.1_1880819_1881641_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|469aa|up_5|NC_014666.1_1881684_1883091_+	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|155aa|up_4|NC_014666.1_1883120_1883585_+	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases	NA|448aa|up_3|NC_014666.1_1883586_1884930_+	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|212aa|up_2|NC_014666.1_1884989_1885625_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|476aa|up_1|NC_014666.1_1886411_1887839_-	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|225aa|up_0|NC_014666.1_1887838_1888513_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|939aa|down_0|NC_014666.1_1889334_1892151_-	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|324aa|down_1|NC_014666.1_1892310_1893282_+	PRK05246, PRK05246, glutathione synthetase; Provisional	NA|133aa|down_2|NC_014666.1_1893278_1893677_+	COG3788, COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only]	NA|379aa|down_3|NC_014666.1_1894901_1896038_-	COG3177, COG3177, Fic family protein [Function unknown]	NA|398aa|down_4|NC_014666.1_1896101_1897295_-	NA	NA|381aa|down_5|NC_014666.1_1897299_1898442_-	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|306aa|down_6|NC_014666.1_1898446_1899364_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|293aa|down_7|NC_014666.1_1899457_1900336_+	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism]	NA|191aa|down_8|NC_014666.1_1900332_1900905_+	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE)	NA|223aa|down_9|NC_014666.1_1900965_1901634_-	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	6	2348228-2348357	5	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	GTGACCCTCGGGCCGCCGACGTTCGACGACGGGACCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA,NA	NA|148aa|up_9|NC_014666.1_2336739_2337183_-	smart00960, Robl_LC7, Roadblock/LC7 domain	NA|429aa|up_8|NC_014666.1_2337191_2338478_-	cd00075, HATPase, Histidine kinase-like ATPase domain	NA|337aa|up_7|NC_014666.1_2338964_2339975_-	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|303aa|up_6|NC_014666.1_2340006_2340915_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|297aa|up_5|NC_014666.1_2341196_2342087_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|262aa|up_4|NC_014666.1_2342116_2342902_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|370aa|up_3|NC_014666.1_2342898_2344008_+	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|154aa|up_2|NC_014666.1_2344004_2344466_+	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|326aa|up_1|NC_014666.1_2344491_2345469_-	pfam04672, Methyltransf_19, S-adenosyl methyltransferase	NA|215aa|up_0|NC_014666.1_2345960_2346605_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|532aa|down_0|NC_014666.1_2348751_2350347_+	cd10792, GH57N_AmyC_like, N-terminal catalytic domain of  alpha-amylase ( AmyC ) and similar proteins	NA|378aa|down_1|NC_014666.1_2350470_2351604_-	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]	NA|487aa|down_2|NC_014666.1_2352055_2353516_+	cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins	NA|361aa|down_3|NC_014666.1_2353602_2354685_+	cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase	NA|594aa|down_4|NC_014666.1_2356853_2358635_+	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2	NA|585aa|down_5|NC_014666.1_2358668_2360423_-	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|474aa|down_6|NC_014666.1_2360798_2362220_+	cd06341, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|581aa|down_7|NC_014666.1_2362216_2363959_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|541aa|down_8|NC_014666.1_2363955_2365578_+	PRK06188, PRK06188, acyl-CoA synthetase; Validated	NA|104aa|down_9|NC_014666.1_2365776_2366088_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	7	2381469-2381610	6	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	GGGGGGTCGAGGTTGCTTCGCTTCTCGACGGTCGGCTTGTTCGGC	45	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA|68aa|up_6|NC_014666.1_2371013_2371217_+,NA|88aa|up_3|NC_014666.1_2375350_2375614_-,NA	NA|453aa|up_9|NC_014666.1_2367446_2368805_-	pfam10138, vWA-TerF-like, vWA found in TerF C-terminus	NA|307aa|up_8|NC_014666.1_2368874_2369795_-	cd04741, DHOD_1A_like, Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain	NA|285aa|up_7|NC_014666.1_2369958_2370813_-	COG2321, COG2321, Predicted metalloprotease [General function prediction only]	NA|68aa|up_6|NC_014666.1_2371013_2371217_+	NA	NA|286aa|up_5|NC_014666.1_2371343_2372201_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|858aa|up_4|NC_014666.1_2372510_2375084_-	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|88aa|up_3|NC_014666.1_2375350_2375614_-	NA	NA|627aa|up_2|NC_014666.1_2375696_2377577_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|635aa|up_1|NC_014666.1_2377650_2379555_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|279aa|up_0|NC_014666.1_2379551_2380388_-	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|473aa|down_0|NC_014666.1_2381971_2383390_+	PRK01490, tig, trigger factor; Provisional	NA|216aa|down_1|NC_014666.1_2383745_2384393_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|211aa|down_2|NC_014666.1_2384454_2385087_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|431aa|down_3|NC_014666.1_2385382_2386675_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|267aa|down_4|NC_014666.1_2387078_2387879_-	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|420aa|down_5|NC_014666.1_2388180_2389440_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|139aa|down_6|NC_014666.1_2389633_2390050_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|344aa|down_7|NC_014666.1_2390731_2391763_+	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|321aa|down_8|NC_014666.1_2392101_2393064_+	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|183aa|down_9|NC_014666.1_2393068_2393617_+	TIGR03426, shape_MreD, rod shape-determining protein MreD
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	8	2606850-2607022	3	PILER-CR	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	TCCCAGACCTACGGCTACGACCAG	24	0	0	NA	NA	NA	2	2	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA|124aa|up_2|NC_014666.1_2593182_2593554_+,NA|441aa|up_1|NC_014666.1_2594826_2596149_+,NA|118aa|down_7|NC_014666.1_2617354_2617708_-	NA|359aa|up_9|NC_014666.1_2582844_2583921_-	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain	NA|587aa|up_8|NC_014666.1_2583917_2585678_-	PRK14948, PRK14948, DNA polymerase III subunit gamma/tau	NA|793aa|up_7|NC_014666.1_2585692_2588071_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|372aa|up_6|NC_014666.1_2588114_2589230_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|335aa|up_5|NC_014666.1_2589226_2590231_-	pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA)	NA|643aa|up_4|NC_014666.1_2590546_2592475_-	pfam13676, TIR_2, TIR domain	NA|82aa|up_3|NC_014666.1_2592810_2593056_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|124aa|up_2|NC_014666.1_2593182_2593554_+	NA	NA|441aa|up_1|NC_014666.1_2594826_2596149_+	NA	NA|582aa|up_0|NC_014666.1_2596733_2598479_-	COG2951, MltB, Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]	NA|215aa|down_0|NC_014666.1_2609281_2609926_+	pfam05536, Neurochondrin, Neurochondrin	NA|84aa|down_1|NC_014666.1_2610070_2610322_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|479aa|down_2|NC_014666.1_2610710_2612147_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|374aa|down_3|NC_014666.1_2612402_2613524_+	pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich region	NA|413aa|down_4|NC_014666.1_2613706_2614945_+	COG3268, COG3268, Uncharacterized conserved protein [Function unknown]	NA|262aa|down_5|NC_014666.1_2615324_2616110_+	pfam14378, PAP2_3, PAP2 superfamily	NA|378aa|down_6|NC_014666.1_2616204_2617338_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|118aa|down_7|NC_014666.1_2617354_2617708_-	NA	NA|455aa|down_8|NC_014666.1_2617798_2619163_-	PRK04247, PRK04247, endonuclease NucS	NA|334aa|down_9|NC_014666.1_2619215_2620217_-	pfam01636, APH, Phosphotransferase enzyme family
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	9	3185057-3185154	7	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	GAGGCGGCACCGTCCAGCGCCCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA|99aa|up_1|NC_014666.1_3183266_3183563_+,NA|73aa|down_3|NC_014666.1_3188257_3188476_-	NA|310aa|up_9|NC_014666.1_3174075_3175005_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|446aa|up_8|NC_014666.1_3175110_3176448_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|245aa|up_7|NC_014666.1_3176551_3177286_-	COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|184aa|up_6|NC_014666.1_3177308_3177860_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|334aa|up_5|NC_014666.1_3177876_3178878_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|864aa|up_4|NC_014666.1_3178874_3181466_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|202aa|up_3|NC_014666.1_3181643_3182249_-	TIGR03384, betaine_BetI, transcriptional repressor BetI	NA|308aa|up_2|NC_014666.1_3182346_3183270_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|99aa|up_1|NC_014666.1_3183266_3183563_+	NA	NA|192aa|up_0|NC_014666.1_3183599_3184175_+	cd14797, DUF302, Uncharacterized domain family DUF302	NA|231aa|down_0|NC_014666.1_3185328_3186021_+	pfam00557, Peptidase_M24, Metallopeptidase family M24	NA|279aa|down_1|NC_014666.1_3186156_3186993_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|262aa|down_2|NC_014666.1_3187045_3187831_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|73aa|down_3|NC_014666.1_3188257_3188476_-	NA	NA|439aa|down_4|NC_014666.1_3188655_3189972_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|131aa|down_5|NC_014666.1_3190291_3190684_-	cd07235, MRD, Mitomycin C resistance protein (MRD)	NA|454aa|down_6|NC_014666.1_3192080_3193442_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|404aa|down_7|NC_014666.1_3193656_3194868_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|271aa|down_8|NC_014666.1_3194974_3195787_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|483aa|down_9|NC_014666.1_3196024_3197473_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	10	3247569-3247672	8	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	GCGAGGCGACAAAGGTCAACCGCGGCGCGCTCGTCGC	37	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA,NA|124aa|down_2|NC_014666.1_3249974_3250346_+,NA|216aa|down_7|NC_014666.1_3255465_3256113_+,NA|62aa|down_8|NC_014666.1_3256203_3256389_+	NA|101aa|up_9|NC_014666.1_3235640_3235943_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|400aa|up_8|NC_014666.1_3236131_3237331_-	pfam04909, Amidohydro_2, Amidohydrolase	NA|230aa|up_7|NC_014666.1_3237698_3238388_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|152aa|up_6|NC_014666.1_3238528_3238984_+	COG3793, TerB, Tellurite resistance protein [Inorganic ion transport and metabolism]	NA|240aa|up_5|NC_014666.1_3239036_3239756_+	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|281aa|up_4|NC_014666.1_3239810_3240653_-	TIGR03620, F420_MSMEG_4141, probable F420-dependent oxidoreductase, MSMEG_4141 family	NA|386aa|up_3|NC_014666.1_3240834_3241992_+	pfam03200, Glyco_hydro_63, Glycosyl hydrolase family 63 C-terminal domain	NA|142aa|up_2|NC_014666.1_3242040_3242466_+	TIGR04023, Pyridoxamine_5'-phosphate_oxidase, PPOX class F420-dependent enzyme, MSMEG_5819/OxyR family	NA|476aa|up_1|NC_014666.1_3242483_3243911_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|473aa|up_0|NC_014666.1_3244463_3245882_+	cd06341, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|270aa|down_0|NC_014666.1_3247704_3248514_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|387aa|down_1|NC_014666.1_3248561_3249722_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|124aa|down_2|NC_014666.1_3249974_3250346_+	NA	NA|219aa|down_3|NC_014666.1_3250441_3251098_-	CHL00095, clpC, Clp protease ATP binding subunit	NA|245aa|down_4|NC_014666.1_3251401_3252136_+	PRK07231, FabG-like, SDR family oxidoreductase	NA|265aa|down_5|NC_014666.1_3252171_3252966_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|376aa|down_6|NC_014666.1_3253581_3254709_-	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|216aa|down_7|NC_014666.1_3255465_3256113_+	NA	NA|62aa|down_8|NC_014666.1_3256203_3256389_+	NA	NA|416aa|down_9|NC_014666.1_3256535_3257783_+	pfam05145, AbrB, Transition state regulatory protein AbrB
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	11	3547170-3547294	9	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	TTGTTCTTGTCGTTCAGGATCCCGTTCGGGAAGAGGCCGCCGTC	44	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA|234aa|up_8|NC_014666.1_3537240_3537942_+,NA	NA|1388aa|up_9|NC_014666.1_3532969_3537133_+	pfam13424, TPR_12, Tetratricopeptide repeat	NA|234aa|up_8|NC_014666.1_3537240_3537942_+	NA	NA|313aa|up_7|NC_014666.1_3538191_3539130_+	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|214aa|up_6|NC_014666.1_3539243_3539885_+	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB	NA|241aa|up_5|NC_014666.1_3540158_3540881_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|380aa|up_4|NC_014666.1_3540997_3542137_+	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|261aa|up_3|NC_014666.1_3542289_3543072_+	PRK00023, cmk, (d)CMP kinase	NA|278aa|up_2|NC_014666.1_3543068_3543902_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|471aa|up_1|NC_014666.1_3544082_3545495_+	PRK03003, PRK03003, GTP-binding protein Der; Reviewed	NA|204aa|up_0|NC_014666.1_3545709_3546321_-	pfam00929, RNase_T, Exonuclease	NA|274aa|down_0|NC_014666.1_3548305_3549127_+	cd05829, Sortase_F, Sortase domain found in the class F family of sortases	NA|354aa|down_1|NC_014666.1_3549743_3550805_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|232aa|down_2|NC_014666.1_3551179_3551875_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|836aa|down_3|NC_014666.1_3551886_3554394_+	cd05805, MPG1_transferase, GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity	NA|320aa|down_4|NC_014666.1_3554529_3555489_+	pfam05949, DUF881, Bacterial protein of unknown function (DUF881)	NA|168aa|down_5|NC_014666.1_3555496_3556000_+	pfam06947, DUF1290, Protein of unknown function (DUF1290)	NA|213aa|down_6|NC_014666.1_3556157_3556796_+	pfam05949, DUF881, Bacterial protein of unknown function (DUF881)	NA|127aa|down_7|NC_014666.1_3556933_3557314_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|184aa|down_8|NC_014666.1_3557858_3558410_+	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|235aa|down_9|NC_014666.1_3558573_3559278_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	12	4114581-4114723	10	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	GCCGAGCTGCACGGTCAGGCATTGGCGGCCGCTCGGGTGATTGATGA	47	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA,NA|225aa|down_6|NC_014666.1_4127054_4127729_-,NA|392aa|down_8|NC_014666.1_4129550_4130726_+	NA|1638aa|up_9|NC_014666.1_4094581_4099495_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|163aa|up_8|NC_014666.1_4099650_4100139_+	pfam04978, DUF664, Protein of unknown function (DUF664)	NA|831aa|up_7|NC_014666.1_4100661_4103154_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|314aa|up_6|NC_014666.1_4103779_4104721_+	pfam03537, Glyco_hydro_114, Glycoside-hydrolase family GH114	NA|316aa|up_5|NC_014666.1_4105215_4106163_+	pfam11790, Glyco_hydro_cc, Glycosyl hydrolase catalytic core	NA|292aa|up_4|NC_014666.1_4106373_4107249_+	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family	NA|511aa|up_3|NC_014666.1_4107397_4108930_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|215aa|up_2|NC_014666.1_4109103_4109748_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|277aa|up_1|NC_014666.1_4109758_4110589_+	PRK11036, PRK11036, tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA|76aa|up_0|NC_014666.1_4110726_4110954_-	smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain	NA|281aa|down_0|NC_014666.1_4117122_4117965_-	cd08826, SPFH_eoslipins_u1, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|354aa|down_1|NC_014666.1_4118047_4119109_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|423aa|down_2|NC_014666.1_4119390_4120659_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|600aa|down_3|NC_014666.1_4120692_4122492_-	pfam14517, Tachylectin, Tachylectin	NA|143aa|down_4|NC_014666.1_4124205_4124634_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|691aa|down_5|NC_014666.1_4124756_4126829_-	COG1864, NUC1, DNA/RNA endonuclease G, NUC1 [Nucleotide transport and metabolism]	NA|225aa|down_6|NC_014666.1_4127054_4127729_-	NA	NA|252aa|down_7|NC_014666.1_4128035_4128791_+	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|392aa|down_8|NC_014666.1_4129550_4130726_+	NA	NA|253aa|down_9|NC_014666.1_4130818_4131577_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	13	6076043-6076135	11	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	GAACGGTCTGACACAGGGGGTCGGACCAGT	30	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA|52aa|up_7|NC_014666.1_6057387_6057543_+,NA|333aa|up_6|NC_014666.1_6057671_6058670_-,NA|154aa|down_1|NC_014666.1_6077659_6078121_+,NA|454aa|down_5|NC_014666.1_6083544_6084906_-	NA|514aa|up_9|NC_014666.1_6053372_6054914_-	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain	NA|510aa|up_8|NC_014666.1_6055326_6056856_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|52aa|up_7|NC_014666.1_6057387_6057543_+	NA	NA|333aa|up_6|NC_014666.1_6057671_6058670_-	NA	NA|311aa|up_5|NC_014666.1_6061471_6062404_+	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism]	NA|513aa|up_4|NC_014666.1_6062452_6063991_-	PRK07208, PRK07208, hypothetical protein; Provisional	NA|795aa|up_3|NC_014666.1_6064773_6067158_-	cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	NA|510aa|up_2|NC_014666.1_6067666_6069196_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|362aa|up_1|NC_014666.1_6069192_6070278_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|915aa|up_0|NC_014666.1_6070672_6073417_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|490aa|down_0|NC_014666.1_6076182_6077652_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|154aa|down_1|NC_014666.1_6077659_6078121_+	NA	NA|652aa|down_2|NC_014666.1_6078223_6080179_+	cd03677, MM_CoA_mutase_beta, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Beta subunit-like subfamily; contains bacterial proteins similar to the beta subunit of MCMs from Propionbacterium shermanni and Streptomyces cinnamonensis, which are alpha/beta heterodimers	NA|745aa|down_3|NC_014666.1_6080178_6082413_+	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed	NA|342aa|down_4|NC_014666.1_6082514_6083540_+	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB	NA|454aa|down_5|NC_014666.1_6083544_6084906_-	NA	NA|258aa|down_6|NC_014666.1_6085389_6086163_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|472aa|down_7|NC_014666.1_6086514_6087930_-	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|364aa|down_8|NC_014666.1_6089031_6090123_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|199aa|down_9|NC_014666.1_6090199_6090796_+	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	14	6160150-6160399	1	CRT	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	CTGCNGCCAGCCNCNCTGC	19	1	13	6160295-6160314|6160295-6160314|6160295-6160314|6160295-6160314|6160295-6160314|6160295-6160314|6160295-6160314|6160295-6160314|6160295-6160314|6160295-6160314|6160295-6160314|6160295-6160314|6160295-6160314	NC_014666.1_6200614-6200633|NC_014666.1_1429274-1429293|NC_014666.1_2465165-2465184|NC_014666.1_5627704-5627723|NC_014666.1_6345940-6345959|NC_014666.1_7903254-7903273|NC_014666.1_8721057-8721076|NC_014666.1_1196968-1196949|NC_014666.1_1946236-1946217|NC_014666.1_4761959-4761940|NC_014666.1_4863079-4863060|NC_014666.1_6313377-6313358|NC_014666.1_7778320-7778301	NA	5	5	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA,NA	NA|484aa|up_9|NC_014666.1_6150253_6151705_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|319aa|up_8|NC_014666.1_6151781_6152738_-	pfam17270, DUF5336, Family of unknown function (DUF5336)	NA|180aa|up_7|NC_014666.1_6153011_6153551_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|94aa|up_6|NC_014666.1_6153547_6153829_-	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|289aa|up_5|NC_014666.1_6154123_6154990_+	cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs	NA|324aa|up_4|NC_014666.1_6155012_6155984_-	COG3793, TerB, Tellurite resistance protein [Inorganic ion transport and metabolism]	NA|149aa|up_3|NC_014666.1_6156093_6156540_-	cd04689, Nudix_Hydrolase_30, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|336aa|up_2|NC_014666.1_6156655_6157663_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|319aa|up_1|NC_014666.1_6158071_6159028_+	pfam01674, Lipase_2, Lipase (class 2)	NA|110aa|up_0|NC_014666.1_6159169_6159499_-	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|336aa|down_0|NC_014666.1_6161156_6162164_-	PRK11453, PRK11453, O-acetylserine/cysteine exporter	NA|328aa|down_1|NC_014666.1_6162235_6163219_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|436aa|down_2|NC_014666.1_6163156_6164464_-	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|770aa|down_3|NC_014666.1_6164870_6167180_+	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins	NA|377aa|down_4|NC_014666.1_6167249_6168380_-	pfam03604, DNA_RNApol_7kD, DNA directed RNA polymerase, 7 kDa subunit	NA|405aa|down_5|NC_014666.1_6168405_6169620_-	pfam13421, Band_7_1, SPFH domain-Band 7 family	NA|269aa|down_6|NC_014666.1_6169792_6170599_-	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|269aa|down_7|NC_014666.1_6170686_6171493_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_8|NC_014666.1_6171594_6172011_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|144aa|down_9|NC_014666.1_6172053_6172485_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	15	6606064-6606135	12	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	CCGGGCTCGGGGCGCTCATGGCGACCG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA,NA	NA|433aa|up_9|NC_014666.1_6594756_6596055_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|63aa|up_8|NC_014666.1_6596054_6596243_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|97aa|up_7|NC_014666.1_6596332_6596623_-	pfam07045, DUF1330, Domain of unknown function (DUF1330)	NA|302aa|up_6|NC_014666.1_6596886_6597792_-	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family	NA|428aa|up_5|NC_014666.1_6597993_6599277_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|810aa|up_4|NC_014666.1_6599442_6601872_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|147aa|up_3|NC_014666.1_6601945_6602386_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|249aa|up_2|NC_014666.1_6602460_6603207_-	cd05233, SDR_c, classical (c) SDRs	NA|391aa|up_1|NC_014666.1_6603561_6604734_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|420aa|up_0|NC_014666.1_6604730_6605990_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|244aa|down_0|NC_014666.1_6607731_6608463_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|318aa|down_1|NC_014666.1_6608565_6609519_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|158aa|down_2|NC_014666.1_6609515_6609989_+	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|343aa|down_3|NC_014666.1_6611375_6612404_+	pfam11136, DUF2889, Protein of unknown function (DUF2889)	NA|434aa|down_4|NC_014666.1_6612515_6613817_+	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|335aa|down_5|NC_014666.1_6613921_6614926_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|326aa|down_6|NC_014666.1_6614930_6615908_+	cd08241, QOR1, Quinone oxidoreductase (QOR)	NA|430aa|down_7|NC_014666.1_6616101_6617391_+	cd06341, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|427aa|down_8|NC_014666.1_6617739_6619020_+	cd06341, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|230aa|down_9|NC_014666.1_6619075_6619765_-	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	16	7298537-7298656	13	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	CTCCGCGAGGCGCGCCTCCGCGCCCGCGTGGTC	33	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA,NA|258aa|down_7|NC_014666.1_7309327_7310101_+	NA|410aa|up_9|NC_014666.1_7285043_7286273_-	TIGR03464, HpnC, squalene synthase HpnC	NA|277aa|up_8|NC_014666.1_7286449_7287280_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|445aa|up_7|NC_014666.1_7288156_7289491_-	PRK06062, PRK06062, hypothetical protein; Provisional	NA|381aa|up_6|NC_014666.1_7289769_7290912_-	pfam09084, NMT1, NMT1/THI5 like	NA|283aa|up_5|NC_014666.1_7291129_7291978_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|331aa|up_4|NC_014666.1_7291974_7292967_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|343aa|up_3|NC_014666.1_7292963_7293992_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|352aa|up_2|NC_014666.1_7293988_7295044_-	TIGR03842, F420_CPS_4043, F420-dependent oxidoreductase, CPS_4043 family	NA|497aa|up_1|NC_014666.1_7295324_7296815_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|469aa|up_0|NC_014666.1_7296980_7298387_-	PRK08323, PRK08323, phenylhydantoinase; Validated	NA|280aa|down_0|NC_014666.1_7298709_7299549_-	cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)	NA|447aa|down_1|NC_014666.1_7299868_7301209_+	PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional	NA|567aa|down_2|NC_014666.1_7301405_7303106_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|469aa|down_3|NC_014666.1_7303356_7304763_-	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|626aa|down_4|NC_014666.1_7304851_7306729_-	cd17595, REC_TrxB, phosphoacceptor receiver (REC) domain a fused response regulator with a thioredoxin reductase output domain	NA|346aa|down_5|NC_014666.1_7307213_7308251_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|352aa|down_6|NC_014666.1_7308297_7309353_-	TIGR04075, Ser/Thr_phosphatase_family_protein, polynucleotide kinase-phosphatase	NA|258aa|down_7|NC_014666.1_7309327_7310101_+	NA	NA|740aa|down_8|NC_014666.1_7310146_7312366_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|99aa|down_9|NC_014666.1_7312705_7313002_+	pfam04149, DUF397, Domain of unknown function (DUF397)
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	17	8447831-8447975	14	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	CCGCTCGCTTGCTCCTGCGCTCACGGCGTCCCGGGTTCGCTCCGTCGCCGCACTC	55	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA,NA	NA|170aa|up_9|NC_014666.1_8436145_8436655_+	TIGR04044, MSMEG_0572_fam, MSMEG_0572 family protein	NA|377aa|up_8|NC_014666.1_8436792_8437923_+	TIGR04043, hypothetical_protein_WH5701_02349, radical SAM protein, MSMEG_0568 family	NA|500aa|up_7|NC_014666.1_8437929_8439429_+	TIGR04050, MSMEG_0567_Cter, AIR synthase-related protein, MSMEG_0567 C-terminal family	NA|302aa|up_6|NC_014666.1_8439534_8440440_+	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|535aa|up_5|NC_014666.1_8440502_8442107_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|389aa|up_4|NC_014666.1_8442130_8443297_+	TIGR04047, MSMEG_0565_glyc, glycosyltransferase, MSMEG_0565 family	NA|296aa|up_3|NC_014666.1_8443436_8444324_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|290aa|up_2|NC_014666.1_8444334_8445204_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|441aa|up_1|NC_014666.1_8445203_8446526_-	pfam04248, NTP_transf_9, Domain of unknown function (DUF427)	NA|360aa|up_0|NC_014666.1_8446703_8447783_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|307aa|down_0|NC_014666.1_8449412_8450333_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|349aa|down_1|NC_014666.1_8450329_8451376_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|421aa|down_2|NC_014666.1_8451545_8452808_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|400aa|down_3|NC_014666.1_8453201_8454401_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|334aa|down_4|NC_014666.1_8454513_8455515_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|149aa|down_5|NC_014666.1_8455490_8455937_-	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|390aa|down_6|NC_014666.1_8456605_8457775_-	pfam14362, DUF4407, Domain of unknown function (DUF4407)	NA|145aa|down_7|NC_014666.1_8458315_8458750_+	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport	NA|257aa|down_8|NC_014666.1_8458771_8459542_-	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|337aa|down_9|NC_014666.1_8459723_8460734_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	18	8704683-8704824	15	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	CAGGCCTTCCCGCCCCTTCGGACCTCCTGACCAGGTCCCCCCCAATGCAGG	51	0	0	NA	NA	NA	1	1	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA,NA|99aa|down_0|NC_014666.1_8704920_8705217_-,NA|80aa|down_4|NC_014666.1_8712205_8712445_-,NA|107aa|down_5|NC_014666.1_8714477_8714798_+	NA|342aa|up_9|NC_014666.1_8689520_8690546_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|304aa|up_8|NC_014666.1_8690542_8691454_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|165aa|up_7|NC_014666.1_8691414_8691909_-	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators	NA|269aa|up_6|NC_014666.1_8692123_8692930_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|405aa|up_5|NC_014666.1_8693205_8694420_+	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|455aa|up_4|NC_014666.1_8696561_8697926_-	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap	NA|301aa|up_3|NC_014666.1_8697988_8698891_-	TIGR03620, F420_MSMEG_4141, probable F420-dependent oxidoreductase, MSMEG_4141 family	NA|476aa|up_2|NC_014666.1_8699123_8700551_+	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|348aa|up_1|NC_014666.1_8700538_8701582_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|596aa|up_0|NC_014666.1_8701664_8703452_+	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)	NA|99aa|down_0|NC_014666.1_8704920_8705217_-	NA	NA|623aa|down_1|NC_014666.1_8705373_8707242_-	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|210aa|down_2|NC_014666.1_8707736_8708366_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|1104aa|down_3|NC_014666.1_8708544_8711856_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|80aa|down_4|NC_014666.1_8712205_8712445_-	NA	NA|107aa|down_5|NC_014666.1_8714477_8714798_+	NA	NA|571aa|down_6|NC_014666.1_8715486_8717199_-	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|855aa|down_7|NC_014666.1_8717573_8720138_+	cd14953, NHL_like_1, Uncharacterized NHL-repeat domain in bacterial proteins	NA|805aa|down_8|NC_014666.1_8720173_8722588_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|534aa|down_9|NC_014666.1_8722686_8724288_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	19	8751745-8751863	16	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	AACGATCTCCGCGTTCCGCGGAACG	25	1	1	8751770-8751786	NC_014666.1_2225307-2225291	NA	2	2	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA,NA|184aa|down_7|NC_014666.1_8758925_8759477_-	NA|375aa|up_9|NC_014666.1_8736832_8737957_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|220aa|up_8|NC_014666.1_8737939_8738599_-	pfam01844, HNH, HNH endonuclease	NA|267aa|up_7|NC_014666.1_8738974_8739775_-	pfam08378, NERD, Nuclease-related domain	NA|510aa|up_6|NC_014666.1_8741904_8743434_+	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|302aa|up_5|NC_014666.1_8743481_8744387_+	TIGR03442, TIGR03442, ergothioneine biosynthesis protein EgtC	NA|340aa|up_4|NC_014666.1_8744614_8745634_+	pfam10017, Methyltransf_33, Histidine-specific methyltransferase, SAM-dependent	NA|618aa|up_3|NC_014666.1_8745731_8747585_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|860aa|up_2|NC_014666.1_8747932_8750512_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|118aa|up_1|NC_014666.1_8750693_8751047_+	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|220aa|up_0|NC_014666.1_8751076_8751736_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|167aa|down_0|NC_014666.1_8753042_8753543_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|339aa|down_1|NC_014666.1_8753670_8754687_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|453aa|down_2|NC_014666.1_8754765_8756124_-	TIGR00665, DnaB, replicative DNA helicase	NA|149aa|down_3|NC_014666.1_8756910_8757357_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|79aa|down_4|NC_014666.1_8757373_8757610_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|197aa|down_5|NC_014666.1_8757699_8758290_-	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional	NA|103aa|down_6|NC_014666.1_8758343_8758652_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|184aa|down_7|NC_014666.1_8758925_8759477_-	NA	NA|367aa|down_8|NC_014666.1_8759872_8760973_-	pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V)	NA|686aa|down_9|NC_014666.1_8761059_8763117_-	COG5650, COG5650, Predicted integral membrane protein [Function unknown]
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	20	8752015-8752266	17	CRISPRCasFinder	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	AACGATCTCCGCGTTCCGCGGAACG	25	0	0	NA	NA	NA	3	3	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA,NA|184aa|down_7|NC_014666.1_8758925_8759477_-	NA|375aa|up_9|NC_014666.1_8736832_8737957_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|220aa|up_8|NC_014666.1_8737939_8738599_-	pfam01844, HNH, HNH endonuclease	NA|267aa|up_7|NC_014666.1_8738974_8739775_-	pfam08378, NERD, Nuclease-related domain	NA|510aa|up_6|NC_014666.1_8741904_8743434_+	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|302aa|up_5|NC_014666.1_8743481_8744387_+	TIGR03442, TIGR03442, ergothioneine biosynthesis protein EgtC	NA|340aa|up_4|NC_014666.1_8744614_8745634_+	pfam10017, Methyltransf_33, Histidine-specific methyltransferase, SAM-dependent	NA|618aa|up_3|NC_014666.1_8745731_8747585_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|860aa|up_2|NC_014666.1_8747932_8750512_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|118aa|up_1|NC_014666.1_8750693_8751047_+	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|220aa|up_0|NC_014666.1_8751076_8751736_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|167aa|down_0|NC_014666.1_8753042_8753543_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|339aa|down_1|NC_014666.1_8753670_8754687_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|453aa|down_2|NC_014666.1_8754765_8756124_-	TIGR00665, DnaB, replicative DNA helicase	NA|149aa|down_3|NC_014666.1_8756910_8757357_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|79aa|down_4|NC_014666.1_8757373_8757610_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|197aa|down_5|NC_014666.1_8757699_8758290_-	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional	NA|103aa|down_6|NC_014666.1_8758343_8758652_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|184aa|down_7|NC_014666.1_8758925_8759477_-	NA	NA|367aa|down_8|NC_014666.1_8759872_8760973_-	pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V)	NA|686aa|down_9|NC_014666.1_8761059_8763117_-	COG5650, COG5650, Predicted integral membrane protein [Function unknown]
GCF_000166135.1_ASM16613v1	NC_014666	Frankia inefficax, complete sequence	21	8752351-8752628	4	PILER-CR	no		cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	Orphan	CCAGCCGACACCGGTAACGATCTCCGCGTTCCGCGGAACGCGACCGAGCCACGAGCG	57	0	0	NA	NA	NA	2	2	Orphan	cas3,cas4,csa3,casR,DEDDh,WYL,cas6,RT	NA,NA|184aa|down_7|NC_014666.1_8758925_8759477_-	NA|375aa|up_9|NC_014666.1_8736832_8737957_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|220aa|up_8|NC_014666.1_8737939_8738599_-	pfam01844, HNH, HNH endonuclease	NA|267aa|up_7|NC_014666.1_8738974_8739775_-	pfam08378, NERD, Nuclease-related domain	NA|510aa|up_6|NC_014666.1_8741904_8743434_+	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|302aa|up_5|NC_014666.1_8743481_8744387_+	TIGR03442, TIGR03442, ergothioneine biosynthesis protein EgtC	NA|340aa|up_4|NC_014666.1_8744614_8745634_+	pfam10017, Methyltransf_33, Histidine-specific methyltransferase, SAM-dependent	NA|618aa|up_3|NC_014666.1_8745731_8747585_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|860aa|up_2|NC_014666.1_8747932_8750512_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|118aa|up_1|NC_014666.1_8750693_8751047_+	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|220aa|up_0|NC_014666.1_8751076_8751736_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|167aa|down_0|NC_014666.1_8753042_8753543_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|339aa|down_1|NC_014666.1_8753670_8754687_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|453aa|down_2|NC_014666.1_8754765_8756124_-	TIGR00665, DnaB, replicative DNA helicase	NA|149aa|down_3|NC_014666.1_8756910_8757357_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|79aa|down_4|NC_014666.1_8757373_8757610_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|197aa|down_5|NC_014666.1_8757699_8758290_-	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional	NA|103aa|down_6|NC_014666.1_8758343_8758652_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|184aa|down_7|NC_014666.1_8758925_8759477_-	NA	NA|367aa|down_8|NC_014666.1_8759872_8760973_-	pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V)	NA|686aa|down_9|NC_014666.1_8761059_8763117_-	COG5650, COG5650, Predicted integral membrane protein [Function unknown]
