The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_015222	Nitrosomonas sp. AL212, complete sequence	3180526	115044	243734	3180526	transposase,tRNA,protease	Escherichia_phage(21.43%)	109	NA	NA
WP_013646289.1|115044_116628_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.5	2.9e-92
WP_013646290.1|116764_117769_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_013646291.1|117802_118321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646292.1|118341_120987_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	41.7	1.3e-185
WP_013646293.1|121216_121423_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_013646294.1|121600_122386_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_013646295.1|122390_122777_-	VOC family protein	NA	NA	NA	NA	NA
WP_013646296.1|123079_123571_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_013646297.1|123635_125354_+	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.8	8.1e-16
WP_013646298.1|125817_126786_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	52.4	8.3e-18
WP_013646299.1|126782_127883_-	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_013646300.1|127934_129848_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_150102823.1|129844_130396_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_013646302.1|130376_131267_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_013646303.1|131345_132404_-	rod shape-determining protein	NA	NA	NA	NA	NA
WP_013646304.1|132534_132822_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_013646305.1|132913_134362_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_013646306.1|134407_135847_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_013646307.1|135912_136284_-	DUF393 domain-containing protein	NA	NA	NA	NA	NA
WP_013646308.1|136216_136507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646309.1|136747_145408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646310.1|145554_148290_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_013646311.1|148340_149345_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_013646312.1|149568_150294_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_013646313.1|150746_151577_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_013646314.1|151729_153019_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_013646315.1|153074_153275_-	YbdD/YjiX family protein	NA	NA	NA	NA	NA
WP_013646316.1|153293_155366_-	carbon starvation protein A	NA	NA	NA	NA	NA
WP_013646317.1|155419_156046_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	36.5	9.1e-26
WP_013646318.1|156011_156827_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	27.5	8.6e-08
WP_013646319.1|156864_158067_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_013646320.1|158093_158759_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_013646321.1|158751_159384_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_013646322.1|159407_160280_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_013646324.1|160407_161631_+	NnrS family protein	NA	NA	NA	NA	NA
WP_013646325.1|161818_162232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646327.1|162730_163873_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	25.3	7.0e-08
WP_013646328.1|163953_164490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646329.1|164898_166116_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_150102824.1|166223_167219_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_013646331.1|167224_169114_+	polysaccharide biosynthesis protein	NA	A0A285PXI2	Cedratvirus	27.0	7.6e-07
WP_013646332.1|169142_170855_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_013646333.1|171005_171938_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	A0A291LA53	Escherichia_phage	61.4	8.3e-100
WP_013646334.1|171954_172500_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	56.2	5.5e-51
WP_013646335.1|172552_173902_+	DNA repair protein RadA	NA	NA	NA	NA	NA
WP_150102723.1|173958_174789_+	alkaline phytoceramidase	NA	NA	NA	NA	NA
WP_013646337.1|175245_177069_+	fatty acyl-AMP ligase	NA	NA	NA	NA	NA
WP_013646338.1|177074_177989_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013646339.1|178018_178276_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_013646340.1|178275_179469_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_041362569.1|179596_180247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646342.1|180387_181722_-	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	29.5	6.0e-43
WP_190274722.1|181924_182323_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013646343.1|182214_183369_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	6.4e-41
WP_150102725.1|184119_185338_+|transposase	IS3 family transposase	transposase	A0A0N7C035	Escherichia_phage	60.1	4.3e-96
WP_013646345.1|185451_186537_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_013646346.1|186755_189059_-|transposase	IS21 family transposase	transposase	A0A2L1IVB6	Escherichia_phage	35.0	1.0e-29
WP_013646347.1|189244_189439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646348.1|190693_191968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646349.1|192079_192871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646350.1|193226_195179_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_013646351.1|195559_196465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646352.1|196581_197964_+	replication initiation factor	NA	NA	NA	NA	NA
WP_041362070.1|197960_198290_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013646354.1|199476_199848_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_013646355.1|199853_201152_+	relaxase	NA	NA	NA	NA	NA
WP_013646356.1|201189_201738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150102827.1|201773_202478_-	glutaredoxin	NA	NA	NA	NA	NA
WP_013646358.1|203178_203583_+	DoxX family protein	NA	NA	NA	NA	NA
WP_013646359.1|203848_204220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150102726.1|204325_205018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646289.1|205386_206970_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.5	2.9e-92
WP_013646288.1|207023_207374_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	35.3	8.4e-13
WP_013646287.1|207361_207658_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_013646361.1|208136_209003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646362.1|209069_209375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646363.1|209620_210181_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	31.0	2.7e-13
WP_013646364.1|210226_210733_-	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_150102728.1|210718_210961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_190274737.1|211082_211421_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	59.3	2.8e-21
WP_013646366.1|211413_211743_+	putative addiction module antidote protein	NA	NA	NA	NA	NA
WP_150102828.1|211897_212155_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_013646278.1|212298_213606_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	38.0	5.4e-36
WP_013646368.1|214677_217335_+	AAA family ATPase	NA	A0A1B1IUG5	uncultured_Mediterranean_phage	27.2	8.9e-46
WP_190274723.1|217663_217990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646369.1|218507_219581_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_013646370.1|219691_220597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646371.1|220749_222381_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_013646372.1|222385_223678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646373.1|223691_224708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646374.1|224881_225247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646375.1|225467_225734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646376.1|225853_229291_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_013646289.1|229548_231132_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.5	2.9e-92
WP_013646288.1|231185_231536_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	35.3	8.4e-13
WP_013646287.1|231523_231820_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_013646378.1|232161_233715_+	recombinase family protein	NA	A0A1B0RXM0	Streptococcus_phage	22.6	8.7e-09
WP_013646379.1|234767_235550_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	57.0	8.3e-77
WP_013646380.1|235546_236569_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	41.3	1.6e-67
WP_013646381.1|237160_237427_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	Q8W6N1	Burkholderia_virus	35.7	2.1e-08
WP_013646382.1|237423_237756_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013646383.1|237776_238067_-	BrnA antitoxin family protein	NA	NA	NA	NA	NA
WP_013646384.1|238035_238305_-	BrnT family toxin	NA	NA	NA	NA	NA
WP_150102829.1|238416_239088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646386.1|239269_239464_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013646387.1|239471_241160_+	replication endonuclease	NA	R4JJS4	Burkholderia_phage	35.0	2.0e-91
WP_013646388.1|241533_241974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646389.1|242107_242386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646390.1|242504_243734_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.5	1.6e-50
>prophage 2
NC_015222	Nitrosomonas sp. AL212, complete sequence	3180526	632897	680941	3180526	transposase,tRNA	Escherichia_phage(23.08%)	46	NA	NA
WP_013646743.1|632897_633878_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013646744.1|633970_634960_+	class I SAM-dependent methyltransferase	NA	E3T531	Cafeteria_roenbergensis_virus	30.7	6.7e-07
WP_013646745.1|634988_635672_+	O-methyltransferase	NA	NA	NA	NA	NA
WP_013646746.1|635837_636092_+	DUF2024 family protein	NA	NA	NA	NA	NA
WP_013646747.1|636197_636713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646748.1|636776_637121_+	arsenate reductase family protein	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	35.4	6.6e-10
WP_013646749.1|637215_637638_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_013646750.1|637624_638431_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_041362126.1|638441_638954_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_013646752.1|638977_639244_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_150102742.1|639466_640771_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_013646754.1|640864_641491_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_013646755.1|641565_642129_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_013646756.1|642141_642627_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_013646757.1|642607_643114_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_013646758.1|643110_644064_+	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	38.4	1.3e-28
WP_013646759.1|644081_645356_+	dihydroorotase	NA	NA	NA	NA	NA
WP_013646760.1|645423_647517_+	M3 family metallopeptidase	NA	A0A1V0SD92	Indivirus	24.2	8.6e-44
WP_013646761.1|647749_648514_+	VacJ family lipoprotein	NA	NA	NA	NA	NA
WP_013646762.1|648878_650033_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013646763.1|650114_650720_+	septation protein A	NA	NA	NA	NA	NA
WP_041362668.1|650719_651022_+	YciI family protein	NA	NA	NA	NA	NA
WP_013646765.1|651176_651971_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_013646766.1|652001_653084_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	28.6	5.4e-26
WP_013646767.1|653300_654575_+	lysophospholipid transporter LplT	NA	NA	NA	NA	NA
WP_013646768.1|654591_655347_-	uracil-DNA glycosylase	NA	A0A218MKQ4	uncultured_virus	34.8	4.2e-17
WP_013646769.1|655343_655814_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_013646770.1|655797_656472_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_150102837.1|656553_657096_-	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA	NA
WP_041362669.1|657095_657581_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_013646773.1|657586_658291_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_013646774.1|658506_659613_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_013646775.1|665384_666329_+	S49 family peptidase	NA	NA	NA	NA	NA
WP_150102743.1|666431_666641_+	hypothetical protein	NA	Q38213	Escherichia_phage	45.2	3.6e-11
WP_190274726.1|666987_667404_+|transposase	transposase	transposase	A0A077K814	Ralstonia_phage	52.5	3.9e-17
WP_013646505.1|669871_671179_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	38.4	3.1e-36
WP_083810500.1|671298_671736_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.3	4.6e-08
WP_013646777.1|671863_672244_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013646778.1|672474_673386_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	32.2	5.4e-27
WP_013646779.1|673385_674441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	48.3	2.0e-86
WP_013646780.1|674532_675885_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_013646781.1|675853_676822_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_013646782.1|677100_677625_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_150102745.1|677716_678283_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_049782527.1|678287_679412_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_013646278.1|679633_680941_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	38.0	5.4e-36
>prophage 3
NC_015222	Nitrosomonas sp. AL212, complete sequence	3180526	891955	928360	3180526	integrase,transposase,tRNA	Shigella_phage(25.0%)	36	881979:881992	929897:929910
881979:881992	attL	ATCAGCTTCCGTGC	NA	NA	NA	NA
WP_013646957.1|891955_892753_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_013646958.1|892779_893397_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_013646959.1|893393_894593_+	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
WP_013646960.1|894799_895663_+	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
WP_013646961.1|895690_896560_+	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA	NA
WP_013646962.1|896580_897879_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_013646963.1|897895_898603_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_013646964.1|898687_899194_+	CvpA family protein	NA	NA	NA	NA	NA
WP_013646965.1|899304_900825_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	39.8	4.0e-83
WP_013646966.1|900932_902111_+	O-succinylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
WP_013646967.1|902167_902659_-	peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	32.2	2.1e-09
WP_013646968.1|902689_903271_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_013646969.1|903412_904792_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	29.2	5.1e-45
WP_150102753.1|904810_905563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646971.1|905580_906519_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_013646972.1|906569_907430_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_013646973.1|907665_909477_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	26.9	2.6e-41
WP_013646974.1|909499_910777_-	divalent metal cation transporter	NA	NA	NA	NA	NA
WP_013646975.1|910997_911402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646976.1|911398_911701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646977.1|911741_913460_-	Kef family K(+) transporter	NA	NA	NA	NA	NA
WP_013646978.1|913550_915419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646979.1|915628_917980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150102754.1|918248_918923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646981.1|919296_920379_+	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA	NA
WP_083810509.1|920484_920958_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	55.0	2.4e-42
WP_083810510.1|920958_921348_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	31.5	1.1e-05
WP_013646982.1|922576_922876_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013646983.1|922935_923667_-	plasmid recombination protein	NA	NA	NA	NA	NA
WP_013646984.1|923670_923811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646985.1|923803_924100_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013646986.1|924101_924347_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_013646987.1|924459_925200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646988.1|925202_926408_-|integrase	tyrosine-type recombinase/integrase	integrase	B7SYF8	Stenotrophomonas_phage	50.8	9.7e-109
WP_013646982.1|926874_927174_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013646989.1|927205_928360_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	8.3e-41
929897:929910	attR	ATCAGCTTCCGTGC	NA	NA	NA	NA
>prophage 4
NC_015222	Nitrosomonas sp. AL212, complete sequence	3180526	993712	999856	3180526		Pneumococcus_phage(16.67%)	6	NA	NA
WP_013647045.1|993712_994132_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	52.5	3.3e-24
WP_013647046.1|994286_995579_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A172JIA8	Bacillus_phage	33.9	3.0e-07
WP_013647047.1|995626_997087_-	leucyl aminopeptidase family protein	NA	Q6GYZ8	Mycoplasma_phage	31.5	2.0e-31
WP_013647048.1|997255_998050_+	thymidylate synthase	NA	A6M9A2	Geobacillus_virus	64.0	4.9e-101
WP_013647049.1|998046_998550_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	49.3	1.8e-32
WP_013647050.1|998680_999856_-	type III PLP-dependent enzyme	NA	A0A060D2X4	Bovine_gammaherpesvirus	35.6	4.1e-51
>prophage 5
NC_015222	Nitrosomonas sp. AL212, complete sequence	3180526	1139049	1171957	3180526	transposase,tRNA	Staphylococcus_phage(16.67%)	32	NA	NA
WP_013647198.1|1139049_1140324_+|tRNA	histidine--tRNA ligase	tRNA	A0A1V0SLE3	Klosneuvirus	23.9	6.4e-18
WP_013647199.1|1140354_1140993_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_013647200.1|1140970_1142227_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_013647201.1|1142311_1143706_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_013647202.1|1145108_1146275_+	response regulator	NA	NA	NA	NA	NA
WP_049782536.1|1146398_1146656_-	hypothetical protein	NA	E5E3P6	Burkholderia_phage	51.9	6.6e-15
WP_013647203.1|1146935_1147322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_190274730.1|1147426_1147645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646982.1|1147724_1148024_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013646989.1|1148055_1149210_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	8.3e-41
WP_083810510.1|1149251_1149641_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	31.5	1.1e-05
WP_190274731.1|1149745_1150114_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	49.2	8.3e-27
WP_013647206.1|1150226_1151135_+	TIGR01777 family protein	NA	NA	NA	NA	NA
WP_013647207.1|1151162_1152467_+	deoxyribodipyrimidine photo-lyase	NA	A0A2H4UV63	Bodo_saltans_virus	37.5	5.5e-73
WP_013647208.1|1152494_1153196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647210.1|1154472_1154793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647211.1|1154873_1155173_+	peptidase	NA	NA	NA	NA	NA
WP_013647212.1|1155244_1155931_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_013647213.1|1155927_1157268_+	GHKL domain-containing protein	NA	W8CYF6	Bacillus_phage	21.2	2.2e-13
WP_190274732.1|1157328_1157859_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA	NA
WP_013647215.1|1158143_1158416_-	TMEM165/GDT1 family protein	NA	NA	NA	NA	NA
WP_013647216.1|1158606_1159614_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2L2DIY2	Acanthamoeba_polyphaga_mimivirus	29.6	3.6e-40
WP_013647217.1|1159888_1161055_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_013647218.1|1161076_1162453_-	MFS transporter	NA	NA	NA	NA	NA
WP_013647219.1|1162449_1163223_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	26.8	8.9e-23
WP_013647220.1|1163249_1163894_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_013647221.1|1164045_1164825_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_041362793.1|1164821_1165520_-	RNA ligase family protein	NA	A0A2H4UUE0	Bodo_saltans_virus	39.1	5.8e-05
WP_013647223.1|1165522_1166059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647224.1|1166051_1167341_-	DUF3696 domain-containing protein	NA	NA	NA	NA	NA
WP_013646989.1|1168438_1169593_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	8.3e-41
WP_150102759.1|1170738_1171957_+|transposase	IS3 family transposase	transposase	A0A0N7C035	Escherichia_phage	60.4	1.9e-96
>prophage 6
NC_015222	Nitrosomonas sp. AL212, complete sequence	3180526	1198461	1226226	3180526	transposase	Hokovirus(20.0%)	31	NA	NA
WP_190274733.1|1198461_1198902_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_083810519.1|1198989_1199199_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013647244.1|1199378_1200845_+	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	26.0	4.0e-16
WP_013647245.1|1200850_1201297_+	response regulator	NA	NA	NA	NA	NA
WP_013647246.1|1201303_1202758_+	response regulator	NA	NA	NA	NA	NA
WP_013647247.1|1202750_1203383_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_013647248.1|1203464_1204358_+|transposase	IS1595-like element ISNtsp5 family transposase	transposase	NA	NA	NA	NA
WP_013646289.1|1204776_1206360_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.5	2.9e-92
WP_013646288.1|1206413_1206764_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	35.3	8.4e-13
WP_013646287.1|1206751_1207048_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_083810520.1|1207092_1207335_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_150102761.1|1207359_1207749_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_150102762.1|1207784_1208114_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013647249.1|1208311_1208512_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_013647250.1|1208609_1208921_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_013647251.1|1209733_1210702_+	peptidyl-prolyl cis-trans isomerase, EpsD family	NA	NA	NA	NA	NA
WP_013647252.1|1210743_1211562_+	polysaccharide export protein EpsE	NA	NA	NA	NA	NA
WP_013647253.1|1211641_1213006_+	chain length determinant protein EpsF	NA	NA	NA	NA	NA
WP_013647254.1|1213035_1213941_+	chain length determinant protein tyrosine kinase EpsG	NA	NA	NA	NA	NA
WP_013647255.1|1213959_1214850_+	exosortase B	NA	NA	NA	NA	NA
WP_013647256.1|1215533_1216220_+	EpsI family protein	NA	NA	NA	NA	NA
WP_013647257.1|1216483_1217986_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647258.1|1218175_1218895_+	sulfotransferase family 2 domain-containing protein	NA	B2ZYD5	Ralstonia_phage	29.2	1.9e-14
WP_013647259.1|1218935_1219823_+	sulfotransferase	NA	NA	NA	NA	NA
WP_013647260.1|1220099_1221242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647261.1|1221329_1222205_+	sulfotransferase	NA	NA	NA	NA	NA
WP_150102764.1|1222387_1222888_+|transposase	transposase	transposase	Q38213	Escherichia_phage	47.1	6.6e-27
WP_190274727.1|1222887_1223028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647262.1|1223556_1224771_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_041362209.1|1224767_1225274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646281.1|1225332_1226226_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NC_015222	Nitrosomonas sp. AL212, complete sequence	3180526	1269511	1353836	3180526	transposase,tRNA	Stx2-converting_phage(22.22%)	60	NA	NA
WP_013647302.1|1269511_1271272_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_013647303.1|1271382_1272123_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_013647304.1|1272241_1274467_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	34.1	1.8e-71
WP_013647306.1|1275187_1275613_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_013647307.1|1275722_1277852_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_013647308.1|1277984_1278254_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_013647309.1|1278605_1280069_-	dynamin family protein	NA	NA	NA	NA	NA
WP_013647310.1|1280606_1281500_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
WP_013647311.1|1281729_1282758_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_013647312.1|1282880_1283315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647313.1|1283576_1284026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647314.1|1284296_1284659_-	exosortase system-associated protein, TIGR04073 family	NA	NA	NA	NA	NA
WP_013647315.1|1284723_1285248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647316.1|1285876_1286746_+	phosphoribulokinase	NA	NA	NA	NA	NA
WP_013647317.1|1286893_1289110_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	36.7	2.6e-107
WP_013647318.1|1289211_1291353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647319.1|1292012_1294151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041362218.1|1294816_1295128_-	BolA/IbaG family iron-sulfur metabolism protein	NA	NA	NA	NA	NA
WP_013647321.1|1295515_1296427_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013647323.1|1296759_1296957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647324.1|1297221_1298946_-	dihydroxyacetone kinase family protein	NA	NA	NA	NA	NA
WP_013647325.1|1299106_1302817_-	response regulator	NA	A0A1V0SGX0	Hokovirus	32.9	1.6e-56
WP_150102847.1|1303295_1304597_+	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_013647327.1|1304593_1306039_+	undecaprenyl-phosphate glucose phosphotransferase	NA	NA	NA	NA	NA
WP_013646281.1|1306226_1307120_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
WP_013647328.1|1307227_1307551_+	ferredoxin family protein	NA	NA	NA	NA	NA
WP_013647329.1|1307579_1310351_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_013647330.1|1310343_1313820_+	UvrD-helicase domain-containing protein	NA	G3MA40	Bacillus_virus	21.5	1.8e-06
WP_013646791.1|1314147_1314957_+	methane monooxygenase/ammonia monooxygenase subunit C	NA	NA	NA	NA	NA
WP_013646792.1|1315131_1315956_+	methane monooxygenase/ammonia monooxygenase subunit A	NA	NA	NA	NA	NA
WP_013646793.1|1315955_1317218_+	methane monooxygenase/ammonia monooxygenase subunit B	NA	NA	NA	NA	NA
WP_013647332.1|1317884_1319495_-	APC family permease	NA	NA	NA	NA	NA
WP_013647333.1|1319753_1321169_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_013647334.1|1321563_1323312_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_013647335.1|1323555_1324035_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_013647336.1|1324043_1325186_+	DUF1207 domain-containing protein	NA	NA	NA	NA	NA
WP_013647337.1|1325458_1326424_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_013647339.1|1326961_1328209_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	34.4	1.0e-28
WP_083810526.1|1328400_1329129_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_013647341.1|1329097_1329913_-	thiazole synthase	NA	NA	NA	NA	NA
WP_013647342.1|1329954_1330158_-	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_013647343.1|1330380_1331814_-	M10 family metallopeptidase	NA	NA	NA	NA	NA
WP_013647344.1|1332758_1333622_+	nucleotide-binding protein	NA	NA	NA	NA	NA
WP_013647345.1|1334132_1335182_-	Fic family protein	NA	NA	NA	NA	NA
WP_013647346.1|1335350_1335572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647347.1|1335963_1337736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647348.1|1337864_1338155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646289.1|1338548_1340132_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.5	2.9e-92
WP_013646288.1|1340185_1340536_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	35.3	8.4e-13
WP_013646287.1|1340523_1340820_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_041362844.1|1341116_1342553_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_013647351.1|1342536_1345779_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_041362225.1|1345802_1346888_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_190274746.1|1347128_1347407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150102770.1|1347343_1347592_+	CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_041362233.1|1347595_1347994_+	CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_013647353.1|1348485_1348845_+	DUF4202 domain-containing protein	NA	NA	NA	NA	NA
WP_013647354.1|1348944_1349844_-|transposase	IS3 family transposase	transposase	A0A0N7C035	Escherichia_phage	60.4	1.1e-96
WP_013646989.1|1349950_1351105_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	8.3e-41
WP_041362237.1|1352327_1353836_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NC_015222	Nitrosomonas sp. AL212, complete sequence	3180526	1751841	1846348	3180526	transposase,protease	Shigella_phage(23.53%)	83	NA	NA
WP_049782549.1|1751841_1752618_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_013646390.1|1753426_1754656_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.5	1.6e-50
WP_150102860.1|1756807_1758226_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.8	1.9e-55
WP_013647698.1|1758464_1759154_-	NapC/NirT family cytochrome c	NA	NA	NA	NA	NA
WP_013647699.1|1759153_1759876_-	cytochrome c family protein	NA	NA	NA	NA	NA
WP_150102778.1|1760001_1761033_-	hydroxylamine oxidation protein HaoB	NA	NA	NA	NA	NA
WP_013647701.1|1761029_1762742_-	hydroxylamine reductase	NA	NA	NA	NA	NA
WP_013647702.1|1763018_1763282_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_150102779.1|1764128_1764593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150102780.1|1764687_1765278_-	HEAT repeat domain-containing protein	NA	NA	NA	NA	NA
WP_013647706.1|1765368_1766124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647707.1|1766878_1768183_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_013647708.1|1768191_1769739_+	fused MFS/spermidine synthase	NA	NA	NA	NA	NA
WP_013647709.1|1769817_1770063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647710.1|1770148_1771828_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_013647711.1|1771853_1772726_-	NAD kinase	NA	NA	NA	NA	NA
WP_013647712.1|1773020_1774040_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_013647713.1|1774178_1775264_+	ferrochelatase	NA	NA	NA	NA	NA
WP_013647714.1|1775312_1775657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647715.1|1777470_1777758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647716.1|1778290_1778629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647717.1|1778968_1780138_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_083810538.1|1780864_1781140_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_049782554.1|1781164_1781914_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_013646905.1|1782731_1783712_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013647718.1|1783803_1784685_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.1	1.1e-66
WP_013647719.1|1784742_1785777_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	43.5	4.6e-75
WP_013647720.1|1785856_1786816_-	DHH family phosphoesterase	NA	NA	NA	NA	NA
WP_013647721.1|1786896_1788801_-	sulfate adenylyltransferase subunit CysN	NA	A0A1V0SGC3	Hokovirus	29.9	7.3e-34
WP_013647722.1|1788800_1789697_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_013647724.1|1790272_1790605_-	Na+/H+ antiporter subunit G	NA	NA	NA	NA	NA
WP_013647725.1|1790608_1790878_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_041362996.1|1790877_1791363_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_150102861.1|1791368_1792901_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_013647728.1|1792900_1793230_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_013647729.1|1793229_1796034_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_013647731.1|1796772_1798479_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.9	5.9e-19
WP_150102781.1|1798554_1798758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647733.1|1801288_1802902_+	long-chain-fatty-acid--CoA ligase	NA	NA	NA	NA	NA
WP_049782555.1|1802973_1803294_+	penicillin acylase family protein	NA	NA	NA	NA	NA
WP_150102782.1|1803230_1803668_+	penicillin acylase family protein	NA	NA	NA	NA	NA
WP_083810542.1|1803589_1804921_+	penicillin acylase family protein	NA	NA	NA	NA	NA
WP_013646505.1|1805014_1806322_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	38.4	3.1e-36
WP_041362329.1|1806416_1806713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647734.1|1806905_1807250_+	exosortase system-associated protein, TIGR04073 family	NA	NA	NA	NA	NA
WP_013647735.1|1807470_1808364_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_013647736.1|1808530_1808839_-	cell division protein FtsB	NA	NA	NA	NA	NA
WP_013647737.1|1808838_1810122_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	59.8	2.7e-141
WP_013647738.1|1810275_1811952_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	54.4	1.5e-155
WP_013647739.1|1812039_1812924_-	fructosamine kinase family protein	NA	NA	NA	NA	NA
WP_013647740.1|1812907_1814344_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_013647741.1|1814585_1815200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647742.1|1815272_1816526_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_013647743.1|1816677_1817067_+	RidA family protein	NA	NA	NA	NA	NA
WP_013647744.1|1817071_1819111_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_083810509.1|1820019_1820493_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	55.0	2.4e-42
WP_083810510.1|1820493_1820883_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	31.5	1.1e-05
WP_013646982.1|1822110_1822410_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013647747.1|1822895_1823270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647748.1|1823729_1824092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647749.1|1824456_1824771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647750.1|1824777_1826115_-	DUF3422 domain-containing protein	NA	NA	NA	NA	NA
WP_013647751.1|1826284_1827622_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	NA	NA	NA	NA
WP_013647752.1|1827644_1829042_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_013646287.1|1830272_1830569_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_013646288.1|1830556_1830907_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	35.3	8.4e-13
WP_013646289.1|1830960_1832544_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.5	2.9e-92
WP_083810510.1|1833469_1833859_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	31.5	1.1e-05
WP_083810544.1|1833859_1834333_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	55.0	2.4e-42
WP_190274744.1|1834352_1834496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150102783.1|1834590_1834818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647754.1|1835035_1835401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647755.1|1835930_1836530_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA	NA
WP_013646504.1|1836604_1838221_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_013647756.1|1838426_1838912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647757.1|1839065_1839275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647758.1|1839560_1840940_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_013647759.1|1841006_1841297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646505.1|1841461_1842769_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	38.4	3.1e-36
WP_013647760.1|1843092_1844187_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_013647761.1|1844666_1845098_+|transposase	IS200/IS605 family transposase	transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	35.3	1.4e-17
WP_083810545.1|1845277_1845574_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_049782554.1|1845598_1846348_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NC_015222	Nitrosomonas sp. AL212, complete sequence	3180526	2137902	2176980	3180526	transposase,tRNA,protease	Micromonas_sp._RCC1109_virus(50.0%)	37	NA	NA
WP_150102791.1|2137902_2138052_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_150102792.1|2138036_2138219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041362378.1|2138292_2138667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646905.1|2140764_2141745_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013648010.1|2142115_2142550_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_013648011.1|2142566_2143871_-	adenylosuccinate synthase	NA	W5S5V7	Pithovirus	35.3	2.0e-67
WP_013648012.1|2143912_2145064_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_013648013.1|2145104_2145290_-	DUF2065 domain-containing protein	NA	NA	NA	NA	NA
WP_013648014.1|2145525_2146401_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_013648015.1|2146401_2147580_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_013648016.1|2147600_2148773_-	GTPase HflX	NA	NA	NA	NA	NA
WP_013648017.1|2148787_2149033_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_013648018.1|2149288_2150281_-	cytochrome-c peroxidase	NA	NA	NA	NA	NA
WP_013648019.1|2150453_2151014_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_013648020.1|2151226_2152936_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_013648021.1|2152923_2153502_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_013648022.1|2153585_2154050_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_013648023.1|2154090_2155623_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	37.1	5.5e-08
WP_013648024.1|2155853_2156627_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_013648025.1|2156780_2157431_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_013648026.1|2157494_2158511_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_013648027.1|2158626_2159118_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_013648028.1|2159125_2160829_-	acetolactate synthase 3 catalytic subunit	NA	E5EQ70	Micromonas_sp._RCC1109_virus	28.9	3.7e-53
WP_013648029.1|2160898_2162374_-|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_013648030.1|2162453_2163284_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_013648032.1|2163555_2166348_+	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
WP_013648033.1|2166531_2166981_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_013648034.1|2167425_2169807_-	GspE/PulE family protein	NA	NA	NA	NA	NA
WP_013648035.1|2169818_2170583_-	3',5'-cyclic-nucleotide phosphodiesterase	NA	NA	NA	NA	NA
WP_013648036.1|2170604_2171030_-	universal stress protein	NA	NA	NA	NA	NA
WP_013648037.1|2171063_2171786_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	43.4	3.3e-35
WP_013648038.1|2171829_2173014_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_013648039.1|2173006_2173264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648040.1|2173424_2174387_+	prolyl aminopeptidase	NA	NA	NA	NA	NA
WP_013648041.1|2174433_2175150_-	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA	NA
WP_013648042.1|2175561_2176077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013648043.1|2176437_2176980_+|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
>prophage 10
NC_015222	Nitrosomonas sp. AL212, complete sequence	3180526	2343158	2442281	3180526	integrase,transposase,tRNA,protease	Escherichia_phage(24.24%)	97	2418408:2418467	2438017:2439001
WP_041362403.1|2343158_2344280_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_013648191.1|2344274_2344781_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_013648192.1|2344744_2346214_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A067ZJB6	Vibrio_phage	29.5	5.3e-16
WP_013648193.1|2346445_2347558_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_013648194.1|2347562_2348372_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	24.1	1.2e-06
WP_013648195.1|2348344_2349241_+	MCE family protein	NA	NA	NA	NA	NA
WP_013648196.1|2349237_2349864_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_013648198.1|2350086_2351340_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
WP_013648199.1|2351409_2352468_+	phytoene/squalene synthase family protein	NA	NA	NA	NA	NA
WP_013648200.1|2352482_2353472_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A0K1L6Z1	Scale_drop_disease_virus	35.3	2.2e-13
WP_013648201.1|2353771_2354179_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	30.4	8.0e-07
WP_013648202.1|2354211_2354970_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_013648203.1|2355670_2355898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013648204.1|2356313_2357141_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_013648205.1|2357156_2358662_-	carboxypeptidase M32	NA	NA	NA	NA	NA
WP_013648206.1|2358778_2359216_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA	NA
WP_013648207.1|2359285_2359570_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013648208.1|2359752_2360025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013648209.1|2360090_2360492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647423.1|2360922_2362506_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.3	1.9e-91
WP_013646288.1|2362559_2362910_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	35.3	8.4e-13
WP_013646287.1|2362897_2363194_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_013648211.1|2363916_2364369_-	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_013648212.1|2364423_2364903_-	polyketide cyclase	NA	NA	NA	NA	NA
WP_013648213.1|2364926_2366090_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_190274741.1|2366252_2367140_-|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	tRNA	NA	NA	NA	NA
WP_150102796.1|2367301_2368520_+|transposase	IS3 family transposase	transposase	A0A0N7C035	Escherichia_phage	60.1	2.8e-95
WP_013648216.1|2368603_2369998_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_013648217.1|2370036_2370564_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	6.7e-30
WP_013648218.1|2370682_2371783_-	nitrite reductase, copper-containing	NA	NA	NA	NA	NA
WP_013648219.1|2372528_2373824_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_013648220.1|2373832_2374819_+	glutathione synthase	NA	NA	NA	NA	NA
WP_013648221.1|2374977_2375898_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_013648222.1|2375944_2377786_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	A0A0P0CCN8	Ostreococcus_mediterraneus_virus	40.9	5.0e-104
WP_013648223.1|2377907_2379257_-	outer membrane protein transport protein	NA	NA	NA	NA	NA
WP_150102871.1|2379719_2382002_+	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.7	5.5e-20
WP_013648225.1|2382134_2382872_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_013646278.1|2383738_2385046_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	38.0	5.4e-36
WP_083810562.1|2385372_2385765_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013646289.1|2386069_2387653_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.5	2.9e-92
WP_013646288.1|2387706_2388057_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	35.3	8.4e-13
WP_013646287.1|2388044_2388341_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_013646281.1|2388981_2389875_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
WP_013648226.1|2390030_2390564_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	36.5	9.9e-13
WP_013648227.1|2390553_2391300_-	S-methyl-5'-thioinosine phosphorylase	NA	NA	NA	NA	NA
WP_013648228.1|2391319_2391865_-	hypoxanthine-guanine phosphoribosyltransferase	NA	A0A1V0SLD7	Klosneuvirus	27.7	2.5e-11
WP_013648229.1|2391872_2393906_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	43.1	3.3e-141
WP_013648230.1|2394027_2394852_+	DUF2914 domain-containing protein	NA	NA	NA	NA	NA
WP_013648231.1|2394890_2395436_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_013648232.1|2395457_2396237_+	DUF4126 family protein	NA	NA	NA	NA	NA
WP_041363123.1|2396340_2397477_+	elongation factor P maturation arginine rhamnosyltransferase EarP	NA	NA	NA	NA	NA
WP_013648234.1|2397555_2398119_+	elongation factor P	NA	NA	NA	NA	NA
WP_013648235.1|2398169_2398730_-	NifU family protein	NA	NA	NA	NA	NA
WP_013648236.1|2398815_2399304_-	SUF system NifU family Fe-S cluster assembly protein	NA	A0A0P0M6T0	Mycobacterium_phage	33.3	9.0e-13
WP_013648237.1|2399303_2400563_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	39.3	2.8e-98
WP_013648238.1|2400559_2401867_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_013648239.1|2401863_2402658_-	Fe-S cluster assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	27.5	9.2e-07
WP_013648240.1|2402654_2404091_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_013648241.1|2404220_2404556_-	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA	NA
WP_013648242.1|2404704_2405193_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_150102759.1|2405429_2406649_-|transposase	IS3 family transposase	transposase	A0A0N7C035	Escherichia_phage	60.4	1.9e-96
WP_190274715.1|2406637_2406967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013647909.1|2406959_2407781_+	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	42.2	2.2e-40
WP_013648244.1|2408067_2408637_+	MEDS domain-containing protein	NA	NA	NA	NA	NA
WP_013648245.1|2408712_2409336_-	MazG-like family protein	NA	A0A1V0DZA1	Acinetobacter_phage	30.6	2.3e-13
WP_013648246.1|2409654_2409810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150102797.1|2409876_2410089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013646905.1|2410296_2411277_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013648249.1|2412372_2413446_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_190274716.1|2413775_2413925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150102759.1|2414565_2415785_-|transposase	IS3 family transposase	transposase	A0A0N7C035	Escherichia_phage	60.4	1.9e-96
WP_049782607.1|2416262_2417030_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	36.6	4.9e-29
WP_013646345.1|2417248_2418334_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
2418408:2418467	attL	TGAATCGCCCCGGGTTTTCCGGAGACTGTTAGTCTTGAGTCAAACCGCATCGGCCGACTC	NA	NA	NA	NA
WP_150102759.1|2418446_2419666_-|transposase	IS3 family transposase	transposase	A0A0N7C035	Escherichia_phage	60.4	1.9e-96
WP_013646343.1|2420416_2421571_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	6.4e-41
WP_013648252.1|2422298_2422607_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013648253.1|2422597_2422912_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_013648254.1|2422853_2423993_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0D4DBR3	Acinetobacter_phage	29.1	1.5e-05
WP_013648255.1|2424170_2424410_+	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_013648256.1|2424406_2424826_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_013648257.1|2426247_2427144_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_013648258.1|2427151_2428399_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_013648259.1|2428418_2429567_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_013648260.1|2429940_2430807_+	RIO-like kinase	NA	NA	NA	NA	NA
WP_013648261.1|2430921_2432739_-	recombinase family protein	NA	R9TP69	Rhizobium_phage	35.2	2.7e-78
WP_013648262.1|2433109_2433376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648263.1|2433372_2433636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648264.1|2433646_2434129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646905.1|2434298_2435279_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013648265.1|2435317_2435473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646989.1|2435876_2437031_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	8.3e-41
WP_013646184.1|2437137_2438037_+|transposase	IS3 family transposase	transposase	A0A0N7C035	Escherichia_phage	60.4	1.4e-96
WP_013648266.1|2438078_2438471_+	conjugal transfer protein TraM	NA	NA	NA	NA	NA
WP_013648267.1|2438501_2438831_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013646379.1|2439150_2439933_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	57.0	8.3e-77
2438017:2439001	attR	GAGTCGGCCGATGCGGTTTGACTCAAGACTAACAGTCTCCGGAAAACCCGGGGCGATTCAGAATAGCGCCTGAACACGGAATTGTTCTGTCACAAGATGATCCGGTATTGATGATGCACACCTTGAATGAAGTATTGCTGGAACAAAATGAAAAAGCCCATGCTGAACTGCTAAGCAATTACCAGGCGATATTAGAAGAAAACTTTAATCGGTGGTGTGAATATTCGACCAAGAAATCCAATGCCATTATCAGTGCATCCATGAGTAACGCGCAATTAACACGAGACCAATTCATGGAAAGCTGTATTCAGTTGATCGATGAAAGGATTAAAAGCGGGGTGGATCAGGAAACTTATGATCTAGCCAGAGTTTCCAGGCAAGCGGCCATTATTAATTTAATGGCATCAACCTTATTCTTGGTTTCAGTTGTAATCATATTTTTGATTTTGTTATAGCAAGATTTCTAAAAATAAGTTGGATAGTACATGAAAACGTTAAATTTAAGTGAAGCTGCCCAATTCTTGAAGTTGCACCCTGAAGAAGTGCGTCGTCGCGCTAAAGCAGGAATTATTCCGGGTGCAAAATTAGGTAAACGGTGGGCATTTATTGATGATGATCTTGCTGATCATATTCGCTCGTTATATGCTTGCACTCGGCAAGCGTTGCAAGTGGGACATGAGGAGAAACAATTATGTCACTCTGTAAACGTGGTAAGACGTGGTGGATTAGTTTCACCACACCAAGCGGCGAGCGAGTTAGATGCTCTGCTGCAACTGAAGACAAAACCCAAGCACAAGAATTCCACGATAAGCTGAAAGCCGAATCCTGGCGGGTTGCAAGACTGGGGGATAAGCCAAAGCGAACTTGGGATGAGGCGGCTTATAAATGGCTGATGGAGACGCAACATAAGGCTTCACATAAGCAGGACATGAAGCAAGTTGCGTGGTTTCAACAGTTTTTTAGGGGCCAATTACTTTCTGAATTA	NA	NA	NA	NA
WP_013646380.1|2439929_2440952_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	41.3	1.6e-67
WP_013648269.1|2441858_2442281_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	34.5	6.4e-15
>prophage 11
NC_015222	Nitrosomonas sp. AL212, complete sequence	3180526	2450514	2505427	3180526	transposase,capsid,protease	Burkholderia_phage(10.53%)	51	NA	NA
WP_013646281.1|2450514_2451408_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
WP_013648277.1|2451745_2453602_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_013648278.1|2453748_2454636_+	energy transducer TonB	NA	NA	NA	NA	NA
WP_013648279.1|2454695_2455514_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_013648280.1|2455721_2457161_+	magnesium transporter	NA	NA	NA	NA	NA
WP_013648281.1|2457256_2458513_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_013648282.1|2458520_2460146_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_013648283.1|2460138_2462127_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_013648284.1|2462126_2463470_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	25.4	1.2e-11
WP_013648285.1|2463459_2464287_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_013648287.1|2464879_2465068_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013648288.1|2465187_2466489_-	MFS transporter	NA	NA	NA	NA	NA
WP_013648289.1|2466522_2467908_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_013648290.1|2468357_2468690_-	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	47.2	2.9e-15
WP_013648291.1|2468673_2468931_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	56.5	1.2e-19
WP_013648293.1|2469257_2469614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648294.1|2469617_2470208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648295.1|2470298_2471444_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2D2W228	Stenotrophomonas_phage	30.1	1.0e-35
WP_013648296.1|2471473_2474338_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	44.8	3.8e-175
WP_013648297.1|2474701_2475145_-	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_013648298.1|2475165_2475759_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_013648299.1|2475791_2477609_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_013648300.1|2477614_2477803_-	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA	NA
WP_013648301.1|2477828_2478503_-	uracil-DNA glycosylase	NA	NA	NA	NA	NA
WP_013648302.1|2479344_2479938_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA	NA
WP_013648303.1|2479953_2480442_-	CDP-archaeol synthase	NA	NA	NA	NA	NA
WP_013648304.1|2480512_2481265_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_013648305.1|2481267_2483682_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	49.4	6.3e-200
WP_013648306.1|2483821_2485099_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	55.9	1.3e-135
WP_013648307.1|2485163_2485805_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	53.3	4.0e-53
WP_013648308.1|2485806_2487111_-	trigger factor	NA	NA	NA	NA	NA
WP_013648309.1|2487364_2488111_-	YciK family oxidoreductase	NA	NA	NA	NA	NA
WP_013648310.1|2488265_2489915_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	62.0	1.8e-177
WP_013648311.1|2489968_2490259_-	co-chaperone GroES	NA	A0A221S322	uncultured_virus	47.9	8.5e-19
WP_013648312.1|2490607_2490907_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013646989.1|2490938_2492093_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	8.3e-41
WP_013648313.1|2492134_2492998_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	44.1	1.1e-58
WP_150102800.1|2493079_2493316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013648314.1|2493403_2494024_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A2H4J538	uncultured_Caudovirales_phage	38.0	1.4e-23
WP_013648315.1|2494020_2495412_+	DNA polymerase III subunit epsilon	NA	A0A0A7RWA3	Clostridium_phage	38.5	6.8e-21
WP_013648316.1|2495404_2496700_+	Y-family DNA polymerase	NA	A0A2H4JBL5	uncultured_Caudovirales_phage	44.1	7.0e-97
WP_013648317.1|2497015_2497432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648318.1|2497434_2497740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013647909.1|2498285_2499107_-	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	42.2	2.2e-40
WP_013648087.1|2499099_2500629_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	24.6	2.0e-10
WP_013646289.1|2501018_2502602_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.5	2.9e-92
WP_013646288.1|2502655_2503006_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	35.3	8.4e-13
WP_013646287.1|2502993_2503290_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_013648319.1|2503454_2503652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648320.1|2503656_2504061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_190274717.1|2504308_2505427_-|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
>prophage 12
NC_015222	Nitrosomonas sp. AL212, complete sequence	3180526	2509334	2618910	3180526	integrase,transposase,tRNA	Escherichia_phage(20.0%)	104	2507428:2507443	2550009:2550024
2507428:2507443	attL	GCCGTACAGTTAGGGG	NA	NA	NA	NA
WP_013648326.1|2509334_2510591_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	44.7	1.8e-89
WP_013648327.1|2511507_2512473_+	magnesium/cobalt transporter CorA	NA	NA	NA	NA	NA
WP_013648328.1|2512632_2513712_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_013648329.1|2513716_2514172_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_013648330.1|2515543_2515801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648331.1|2515958_2516294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648332.1|2516549_2516795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150102872.1|2517185_2517482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013648334.1|2517614_2521373_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SBU4	Catovirus	28.5	3.7e-53
WP_013648335.1|2521756_2521963_+	addiction module protein	NA	NA	NA	NA	NA
WP_013648336.1|2521962_2522259_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_013648337.1|2522350_2524135_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_041362437.1|2524374_2524797_-|transposase	IS200/IS605 family transposase	transposase	G9CU69	Helicobacter_phage	27.0	2.0e-08
WP_013648339.1|2526508_2527018_+	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
WP_013648340.1|2527095_2527512_+	VOC family protein	NA	NA	NA	NA	NA
WP_013648341.1|2527498_2527813_+	TfoX/Sxy family protein	NA	NA	NA	NA	NA
WP_013648342.1|2527863_2528346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013648344.1|2528580_2528994_+	thermonuclease family protein	NA	NA	NA	NA	NA
WP_013648345.1|2529175_2529784_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_013648346.1|2529814_2530594_-	co-chaperone DjlA	NA	NA	NA	NA	NA
WP_013648347.1|2530677_2530923_-	BolA/IbaG family iron-sulfur metabolism protein	NA	NA	NA	NA	NA
WP_013648348.1|2530971_2531727_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_013648349.1|2531723_2532641_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	32.7	1.6e-26
WP_041363151.1|2532688_2533006_-	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_013648351.1|2533041_2533662_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_013648352.1|2533882_2534350_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
WP_013648353.1|2534349_2535147_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA	NA
WP_013648354.1|2535139_2535952_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.4	7.4e-20
WP_041362441.1|2536306_2537143_+	thermonuclease family protein	NA	NA	NA	NA	NA
WP_013648356.1|2537207_2538515_-	M18 family aminopeptidase	NA	NA	NA	NA	NA
WP_013648357.1|2539028_2542559_+	calcium-binding protein	NA	NA	NA	NA	NA
WP_150102873.1|2542685_2543966_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_013648359.1|2543980_2544691_-	cytochrome c	NA	NA	NA	NA	NA
WP_013648360.1|2545072_2546086_+	cation transporter	NA	NA	NA	NA	NA
WP_013648361.1|2546097_2548815_-	cation-transporting P-type ATPase	NA	M1HM40	Paramecium_bursaria_Chlorella_virus	28.0	1.1e-67
WP_013648362.1|2548939_2549452_+	phosphatase	NA	NA	NA	NA	NA
WP_013648363.1|2549522_2550005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013648364.1|2550193_2551024_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
2550009:2550024	attR	CCCCTAACTGTACGGC	NA	NA	NA	NA
WP_013648365.1|2551030_2552635_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_013648366.1|2552748_2553075_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013648367.1|2553178_2553595_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_013648368.1|2553628_2554057_-	membrane protein	NA	NA	NA	NA	NA
WP_013648369.1|2554186_2555047_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_013648370.1|2555134_2556145_-	molecular chaperone DnaJ	NA	NA	NA	NA	NA
WP_013648371.1|2556405_2556591_+	hemin uptake protein HemP	NA	NA	NA	NA	NA
WP_013648372.1|2556837_2557302_+	bacterioferritin	NA	NA	NA	NA	NA
WP_013648373.1|2557420_2558068_+	DUF2325 domain-containing protein	NA	NA	NA	NA	NA
WP_013648087.1|2558214_2559744_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	24.6	2.0e-10
WP_013647909.1|2559736_2560558_+	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	42.2	2.2e-40
WP_013648374.1|2562013_2562451_-|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_013646795.1|2562779_2563349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646794.1|2563416_2564004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013646793.1|2564164_2565427_-	methane monooxygenase/ammonia monooxygenase subunit B	NA	NA	NA	NA	NA
WP_013646792.1|2565426_2566251_-	methane monooxygenase/ammonia monooxygenase subunit A	NA	NA	NA	NA	NA
WP_013646791.1|2566425_2567235_-	methane monooxygenase/ammonia monooxygenase subunit C	NA	NA	NA	NA	NA
WP_150102802.1|2567747_2568029_-|transposase	transposase	transposase	E5E3P6	Burkholderia_phage	53.6	1.2e-17
WP_083810509.1|2568076_2568550_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	55.0	2.4e-42
WP_083810510.1|2568550_2568940_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	31.5	1.1e-05
WP_013646989.1|2569028_2570183_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	8.3e-41
WP_083810562.1|2570074_2570467_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013648375.1|2571284_2571671_-	response regulator	NA	B5LWA6	Feldmannia_species_virus	31.4	3.3e-10
WP_013648376.1|2571801_2573259_-	potassium transporter Trk	NA	NA	NA	NA	NA
WP_013648377.1|2573271_2574720_-	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
WP_013648378.1|2574729_2575518_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_013648379.1|2575517_2576078_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_013648380.1|2576246_2576993_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_041363156.1|2577013_2578354_+	amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
WP_013648382.1|2578456_2578729_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_013648383.1|2578830_2580786_+	CRTAC1 family protein	NA	NA	NA	NA	NA
WP_013648385.1|2581179_2583621_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_013646281.1|2583663_2584557_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
WP_013648386.1|2584815_2585982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648387.1|2586604_2587768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648388.1|2588275_2589001_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_013648389.1|2589087_2589678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648390.1|2589859_2591335_-	carbohydrate kinase	NA	NA	NA	NA	NA
WP_013648391.1|2591331_2592921_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_013648392.1|2592917_2593658_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_013648393.1|2593693_2594851_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_013648394.1|2595094_2595841_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_013648395.1|2595915_2596716_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_013648396.1|2596771_2597188_+	DUF4019 domain-containing protein	NA	NA	NA	NA	NA
WP_013648397.1|2597350_2598610_+	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_013648398.1|2598682_2599429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041362449.1|2599510_2600227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013648400.1|2600281_2601133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150102775.1|2601122_2602342_-|transposase	IS3 family transposase	transposase	A0A0N7C035	Escherichia_phage	60.1	2.5e-96
WP_013648402.1|2602595_2602949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013648403.1|2603068_2604031_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_150102775.1|2604573_2605792_+|transposase	IS3 family transposase	transposase	A0A0N7C035	Escherichia_phage	60.1	2.5e-96
WP_041362451.1|2605976_2607485_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_013648405.1|2607716_2608355_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_013648406.1|2608351_2609203_-	RIO-like kinase	NA	NA	NA	NA	NA
WP_013648407.1|2609461_2609947_-	VOC family protein	NA	NA	NA	NA	NA
WP_150102803.1|2610019_2610226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013648409.1|2610276_2610666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150102804.1|2610688_2610898_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_013648411.1|2611302_2612907_+	ABC-F family ATPase	NA	A0A2K9L3Z8	Tupanvirus	26.6	6.3e-55
WP_041363158.1|2613514_2614477_+	PAS domain-containing protein	NA	B5LWN0	Feldmannia_species_virus	32.4	8.8e-12
WP_013648412.1|2614536_2614836_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013646989.1|2614867_2616022_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	8.3e-41
WP_041363160.1|2616063_2616381_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_013646379.1|2616440_2617223_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	57.0	8.3e-77
WP_083810509.1|2618436_2618910_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	55.0	2.4e-42
