assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000182875.1_ASM18287v1	NC_017563	Streptococcus thermophilus ND03, complete sequence	1	639512-641921	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	Type II-A,Type II-B,Type II-C	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	35,36,36,35	36	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	NA|86aa|up_5|NC_017563.1_632325_632583_-,NA	NA|183aa|up_9|NC_017563.1_628147_628696_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|454aa|up_8|NC_017563.1_628911_630273_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|74aa|up_7|NC_017563.1_631479_631701_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|153aa|up_6|NC_017563.1_631700_632159_+	COG3392, COG3392, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|86aa|up_5|NC_017563.1_632325_632583_-	NA	NA|205aa|up_4|NC_017563.1_632752_633367_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	cas9|1122aa|up_3|NC_017563.1_633620_636986_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_2|NC_017563.1_637163_638075_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|108aa|up_1|NC_017563.1_638076_638400_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|351aa|up_0|NC_017563.1_638396_639449_+	pfam16813, Cas_St_Csn2, CRISPR-associated protein Csn2 subfamily St	NA|272aa|down_0|NC_017563.1_641962_642778_-	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|301aa|down_1|NC_017563.1_642777_643680_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|711aa|down_2|NC_017563.1_644043_646176_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|147aa|down_3|NC_017563.1_646162_646603_+	PRK04351, PRK04351, SprT family protein	NA|88aa|down_4|NC_017563.1_646668_646932_+	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|310aa|down_5|NC_017563.1_647062_647992_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|264aa|down_6|NC_017563.1_647991_648783_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|133aa|down_7|NC_017563.1_648905_649304_+	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|147aa|down_8|NC_017563.1_649316_649757_+	pfam12732, YtxH, YtxH-like protein	NA|99aa|down_9|NC_017563.1_649777_650074_-	pfam11674, DUF3270, Protein of unknown function (DUF3270)
GCF_000182875.1_ASM18287v1	NC_017563	Streptococcus thermophilus ND03, complete sequence	2	873997-874098	2	CRISPRCasFinder	no	cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	Type III-A,Type III-B,Type III-D,Type III-C	GATATAAACCTAATTACCTCGAGAGGGGAC	30	0	0	NA	NA	NA	1	1	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	NA|327aa|up_8|NC_017563.1_866107_867088_+,NA	NA|553aa|up_9|NC_017563.1_864150_865809_-	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|327aa|up_8|NC_017563.1_866107_867088_+	NA	NA|162aa|up_7|NC_017563.1_867393_867879_+	cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function	NA|64aa|up_6|NC_017563.1_867882_868074_+	COG4405, COG4405, Uncharacterized protein conserved in bacteria [Function unknown]	NA|223aa|up_5|NC_017563.1_868930_869599_+	pfam05857, TraX, TraX protein	NA|70aa|up_4|NC_017563.1_869614_869824_+	pfam05857, TraX, TraX protein	NA|183aa|up_3|NC_017563.1_869865_870414_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|268aa|up_2|NC_017563.1_870654_871458_+	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|316aa|up_1|NC_017563.1_871476_872424_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	cas2|110aa|up_0|NC_017563.1_873566_873896_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|244aa|down_0|NC_017563.1_874234_874966_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|759aa|down_1|NC_017563.1_874946_877223_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|127aa|down_2|NC_017563.1_877226_877607_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|221aa|down_3|NC_017563.1_877606_878269_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|300aa|down_4|NC_017563.1_878270_879170_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|358aa|down_5|NC_017563.1_879172_880246_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|392aa|down_6|NC_017563.1_880399_881575_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|232aa|down_7|NC_017563.1_881774_882470_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|210aa|down_8|NC_017563.1_882558_883188_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|484aa|down_9|NC_017563.1_883884_885336_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]
GCF_000182875.1_ASM18287v1	NC_017563	Streptococcus thermophilus ND03, complete sequence	3	1363057-1364415	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	Type II-A,Type II-B,Type II-C	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	20,20,20	20	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	NA|66aa|up_9|NC_017563.1_1356767_1356965_-,NA|148aa|up_4|NC_017563.1_1359849_1360293_-,NA|80aa|up_0|NC_017563.1_1362733_1362973_-,NA	NA|66aa|up_9|NC_017563.1_1356767_1356965_-	NA	NA|438aa|up_8|NC_017563.1_1357131_1358445_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|up_7|NC_017563.1_1358538_1358667_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|244aa|up_6|NC_017563.1_1358748_1359480_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|78aa|up_5|NC_017563.1_1359480_1359714_-	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|148aa|up_4|NC_017563.1_1359849_1360293_-	NA	NA|128aa|up_3|NC_017563.1_1360323_1360707_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|81aa|up_2|NC_017563.1_1361395_1361638_+	COG2182, MalE, Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]	NA|297aa|up_1|NC_017563.1_1361805_1362696_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|80aa|up_0|NC_017563.1_1362733_1362973_-	NA	csn2|220aa|down_0|NC_017563.1_1364736_1365396_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|NC_017563.1_1365385_1365730_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NC_017563.1_1365726_1366596_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1389aa|down_3|NC_017563.1_1366595_1370762_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|216aa|down_4|NC_017563.1_1371094_1371742_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|575aa|down_5|NC_017563.1_1371853_1373578_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|651aa|down_6|NC_017563.1_1373674_1375627_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|187aa|down_7|NC_017563.1_1375627_1376188_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|232aa|down_8|NC_017563.1_1376273_1376969_-	pfam04172, LrgB, LrgB-like family	NA|125aa|down_9|NC_017563.1_1376961_1377336_-	pfam03788, LrgA, LrgA family
GCF_000182875.1_ASM18287v1	NC_017563	Streptococcus thermophilus ND03, complete sequence	4	1579625-1579716	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	Unclear	CTTTTCTTTACGATATCAATTTTAACATCTTT	32	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	NA|86aa|up_3|NC_017563.1_1575244_1575502_-,NA|143aa|down_7|NC_017563.1_1585618_1586047_-	cas3|673aa|up_9|NC_017563.1_1566694_1568713_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|368aa|up_8|NC_017563.1_1568841_1569945_-	PRK00053, alr, alanine racemase; Reviewed	NA|120aa|up_7|NC_017563.1_1569965_1570325_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|344aa|up_6|NC_017563.1_1570328_1571360_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|344aa|up_5|NC_017563.1_1571457_1572489_-	COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	NA|850aa|up_4|NC_017563.1_1572512_1575062_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|86aa|up_3|NC_017563.1_1575244_1575502_-	NA	NA|316aa|up_2|NC_017563.1_1575588_1576536_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|298aa|up_1|NC_017563.1_1576601_1577495_-	pfam00480, ROK, ROK family	NA|634aa|up_0|NC_017563.1_1577678_1579580_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|481aa|down_0|NC_017563.1_1579828_1581271_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|322aa|down_1|NC_017563.1_1581279_1582245_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|145aa|down_2|NC_017563.1_1582334_1582769_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|down_3|NC_017563.1_1582761_1583151_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|187aa|down_4|NC_017563.1_1583221_1583782_-	PRK00529, PRK00529, elongation factor P; Validated	NA|152aa|down_5|NC_017563.1_1583894_1584350_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|354aa|down_6|NC_017563.1_1584368_1585430_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|143aa|down_7|NC_017563.1_1585618_1586047_-	NA	NA|198aa|down_8|NC_017563.1_1586091_1586685_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|130aa|down_9|NC_017563.1_1586653_1587043_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter
