assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000183405.1_ASM18340v1	NC_014758	Calditerrivibrio nitroreducens DSM 19672, complete sequence	1	1652519-1654555	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,PrimPol,cas1,csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas6	DEDDh,csa3,Cas9_archaeal,cas3,DinG,cas2,PrimPol,cas1,csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas6,WYL,cas7,cas5,cas4	Type III-B,Type III-C,Type III-D,Type III-A	GTCGCAATCCCTTAAAGTCAGGTCAATGATTCCAAC,GTCGCAATCCCTTAAAGTCAGGTCAATGTTTCCAAC,GTCGCAATCCCTTAAAGTCAGGTCAATGTTTCCAAC	36,36,36	0	0	NA	NA	NA:NA:NA	27,27,25	27	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	DEDDh,csa3,Cas9_archaeal,cas3,DinG,cas2,PrimPol,cas1,csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas6,WYL,cas7,cas5,cas4,cas14j	NA|120aa|up_1|NC_014758.1_1651027_1651387_-,NA|122aa|up_0|NC_014758.1_1651467_1651833_-,NA|285aa|down_1|NC_014758.1_1656441_1657296_-,NA|212aa|down_2|NC_014758.1_1657304_1657940_-,NA|184aa|down_3|NC_014758.1_1657932_1658484_-,csx20|130aa|down_4|NC_014758.1_1658660_1659050_-	NA|389aa|up_9|NC_014758.1_1641971_1643138_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|333aa|up_8|NC_014758.1_1643187_1644186_-	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|447aa|up_7|NC_014758.1_1644163_1645504_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|222aa|up_6|NC_014758.1_1645503_1646169_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	cas2|94aa|up_5|NC_014758.1_1646328_1646610_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	PrimPol|587aa|up_4|NC_014758.1_1646728_1648489_+	COG4951, COG4951, Uncharacterized protein conserved in bacteria [Function unknown]	cas1|336aa|up_3|NC_014758.1_1648495_1649503_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|424aa|up_2|NC_014758.1_1649521_1650793_+	pfam14559, TPR_19, Tetratricopeptide repeat	NA|120aa|up_1|NC_014758.1_1651027_1651387_-	NA	NA|122aa|up_0|NC_014758.1_1651467_1651833_-	NA	NA|503aa|down_0|NC_014758.1_1654932_1656441_-	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	NA|285aa|down_1|NC_014758.1_1656441_1657296_-	NA	NA|212aa|down_2|NC_014758.1_1657304_1657940_-	NA	NA|184aa|down_3|NC_014758.1_1657932_1658484_-	NA	csx20|130aa|down_4|NC_014758.1_1658660_1659050_-	NA	csm5gr7|380aa|down_5|NC_014758.1_1659055_1660195_-	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csm4gr5|311aa|down_6|NC_014758.1_1660191_1661124_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|226aa|down_7|NC_014758.1_1661131_1661809_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|156aa|down_8|NC_014758.1_1661827_1662295_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|793aa|down_9|NC_014758.1_1662291_1664670_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10
GCF_000183405.1_ASM18340v1	NC_014758	Calditerrivibrio nitroreducens DSM 19672, complete sequence	2	1990498-1990853	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas6,cas7,cas5,cas3,cas4,cas1,cas2	DEDDh,csa3,Cas9_archaeal,cas3,DinG,cas2,PrimPol,cas1,csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas6,WYL,cas7,cas5,cas4	Unclear	GTTTCATCTGAACCATGTGGGATTTAAAG,GTTTCATCTGAACCATGTGGGATTTAAAG,GTTTCATCTGAACCATGTGGGATTTAAAG	29,29,29	0	0	NA	NA	NA:NA:NA	5,5,5	5	Unclear	DEDDh,csa3,Cas9_archaeal,cas3,DinG,cas2,PrimPol,cas1,csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas6,WYL,cas7,cas5,cas4,cas14j	NA|488aa|up_8|NC_014758.1_1981201_1982665_+,NA|87aa|down_1|NC_014758.1_1991287_1991548_+,NA|63aa|down_2|NC_014758.1_1991641_1991830_-,NA|124aa|down_3|NC_014758.1_1991846_1992218_+,NA|114aa|down_9|NC_014758.1_1996749_1997091_-	cas6|265aa|up_9|NC_014758.1_1980414_1981209_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|488aa|up_8|NC_014758.1_1981201_1982665_+	NA	cas7|472aa|up_7|NC_014758.1_1982678_1984094_+	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2	cas5|225aa|up_6|NC_014758.1_1984115_1984790_+	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|773aa|up_5|NC_014758.1_1984761_1987080_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|93aa|up_4|NC_014758.1_1987131_1987410_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|369aa|up_3|NC_014758.1_1987495_1988602_+	pfam00872, Transposase_mut, Transposase, Mutator family	cas4|106aa|up_2|NC_014758.1_1988594_1988912_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|327aa|up_1|NC_014758.1_1988928_1989909_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_0|NC_014758.1_1989924_1990188_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|132aa|down_0|NC_014758.1_1990886_1991282_+	pfam04985, Phage_tube, Phage tail tube protein FII	NA|87aa|down_1|NC_014758.1_1991287_1991548_+	NA	NA|63aa|down_2|NC_014758.1_1991641_1991830_-	NA	NA|124aa|down_3|NC_014758.1_1991846_1992218_+	NA	NA|513aa|down_4|NC_014758.1_1992682_1994221_+	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|196aa|down_5|NC_014758.1_1994458_1995046_-	PRK07101, PRK07101, hypothetical protein; Provisional	NA|323aa|down_6|NC_014758.1_1995029_1995998_-	PRK07093, PRK07093, para-aminobenzoate synthase component I; Validated	NA|70aa|down_7|NC_014758.1_1995999_1996209_-	TIGR03980, conserved_hypothetical_protein, hybrid cluster protein-associated redox disulfide domain	NA|183aa|down_8|NC_014758.1_1996201_1996750_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|114aa|down_9|NC_014758.1_1996749_1997091_-	NA
GCF_000183405.1_ASM18340v1	NC_014758	Calditerrivibrio nitroreducens DSM 19672, complete sequence	3	2109900-2111193	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,csa3,Cas9_archaeal,cas3,DinG,cas2,PrimPol,cas1,csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas6,WYL,cas7,cas5,cas4	Orphan	GTCGCAATCCCTTAAAGTCAGGTCAATGATTCCAAC,GTTGGAATCATTGACCTGACTTTAAGGGATTGCGAC,GTTGGAATCATTGACCTGACTTTAAGGGATTGCGAC	36,36,36	0	0	NA	NA	NA:NA:NA	16,17,17	17	Orphan	DEDDh,csa3,Cas9_archaeal,cas3,DinG,cas2,PrimPol,cas1,csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas6,WYL,cas7,cas5,cas4,cas14j	NA|160aa|up_8|NC_014758.1_2095518_2095998_-,NA|167aa|up_4|NC_014758.1_2101981_2102482_-,NA|47aa|down_1|NC_014758.1_2113551_2113692_-	NA|516aa|up_9|NC_014758.1_2093727_2095275_+	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|160aa|up_8|NC_014758.1_2095518_2095998_-	NA	NA|536aa|up_7|NC_014758.1_2095966_2097574_-	pfam13337, Lon_2, Putative ATP-dependent Lon protease	NA|835aa|up_6|NC_014758.1_2097585_2100090_-	TIGR02687, conserved_hypothetical_protein, TIGR02687 family protein	NA|626aa|up_5|NC_014758.1_2100094_2101972_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|167aa|up_4|NC_014758.1_2101981_2102482_-	NA	NA|580aa|up_3|NC_014758.1_2102474_2104214_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|1162aa|up_2|NC_014758.1_2104216_2107702_-	NF033441, BREX_BrxC, BREX system P-loop protein BrxC	NA|197aa|up_1|NC_014758.1_2107698_2108289_-	pfam08747, DUF1788, Domain of unknown function (DUF1788)	NA|190aa|up_0|NC_014758.1_2108293_2108863_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|513aa|down_0|NC_014758.1_2111581_2113120_+	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|47aa|down_1|NC_014758.1_2113551_2113692_-	NA	NA|206aa|down_2|NC_014758.1_2113860_2114478_+	pfam13036, LpoB, Peptidoglycan-synthase activator LpoB	NA|542aa|down_3|NC_014758.1_2114508_2116134_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|98aa|down_4|NC_014758.1_2116149_2116443_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|464aa|down_5|NC_014758.1_2116665_2118057_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|201aa|down_6|NC_014758.1_2118070_2118673_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|178aa|down_7|NC_014758.1_2118688_2119222_+	pfam03350, UPF0114, Uncharacterized protein family, UPF0114	NA|438aa|down_8|NC_014758.1_2119373_2120687_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|105aa|down_9|NC_014758.1_2120783_2121098_+	PRK05573, rplU, 50S ribosomal protein L21; Validated
GCF_000183405.1_ASM18340v1	NC_014749	Calditerrivibrio nitroreducens DSM 19672 plasmid pCALNI01, complete sequence	1	33042-33395	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14j	Unclear	GTTTCATCTGAACCATGTGGGATTTAAA,GTTTCATCTGAACCATGTGGGATTTAAA,GTTTCATCTGAACCATGTGGGATTTAAA	28,28,28	0	0	NA	NA	NA:NA:NA	4,5,5	5	TypeV	DEDDh,csa3,Cas9_archaeal,cas3,DinG,cas2,PrimPol,cas1,csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas6,WYL,cas7,cas5,cas4,cas14j	NA|83aa|up_1|NC_014749.1_30990_31239_+,NA|66aa|down_0|NC_014749.1_33538_33736_-,NA|63aa|down_4|NC_014749.1_36435_36624_-,NA|55aa|down_5|NC_014749.1_36642_36807_-	NA|319aa|up_9|NC_014749.1_19933_20890_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|427aa|up_8|NC_014749.1_22748_24029_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|247aa|up_7|NC_014749.1_24211_24952_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|324aa|up_6|NC_014749.1_25258_26230_-	cd16393, SPO0J_N, Thermus thermophilus stage 0 sporulation protein J-like N-terminal domain, ParB family member	NA|302aa|up_5|NC_014749.1_26216_27122_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|486aa|up_4|NC_014749.1_27131_28589_-	COG0593, DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]	NA|141aa|up_3|NC_014749.1_29016_29439_+	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|403aa|up_2|NC_014749.1_29422_30631_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|83aa|up_1|NC_014749.1_30990_31239_+	NA	NA|369aa|up_0|NC_014749.1_31509_32616_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|66aa|down_0|NC_014749.1_33538_33736_-	NA	NA|289aa|down_1|NC_014749.1_34104_34971_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|195aa|down_2|NC_014749.1_34986_35571_+	pfam01844, HNH, HNH endonuclease	NA|114aa|down_3|NC_014749.1_36016_36358_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|63aa|down_4|NC_014749.1_36435_36624_-	NA	NA|55aa|down_5|NC_014749.1_36642_36807_-	NA	NA|513aa|down_6|NC_014749.1_37427_38966_+	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|516aa|down_7|NC_014749.1_39094_40642_+	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|247aa|down_8|NC_014749.1_40868_41609_-	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|284aa|down_9|NC_014749.1_41605_42457_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
