assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000183645.1_ASM18364v1	NC_017530	Pseudomonas putida BIRD-1, complete sequence	1	753929-754027	1	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	GAGCGGGCTCACCCGCGAAAGGGCCGCAGAA	31	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA,NA	NA|944aa|up_9|NC_017530.1_745668_748500_+	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|172aa|up_8|NC_017530.1_748492_749008_+	PRK00376, lspA, lipoprotein signal peptidase	NA|146aa|up_7|NC_017530.1_749000_749438_+	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|316aa|up_6|NC_017530.1_749452_750400_+	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|161aa|up_5|NC_017530.1_750476_750959_-	pfam12019, GspH, Type II transport protein GspH	NA|61aa|up_4|NC_017530.1_751068_751251_+	COG4967, PilV, Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion]	NA|215aa|up_3|NC_017530.1_751247_751892_+	COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion]	NA|155aa|up_2|NC_017530.1_751888_752353_+	COG4726, PilX, Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]	NA|130aa|up_1|NC_017530.1_752354_752744_+	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]	NA|366aa|up_0|NC_017530.1_752798_753896_+	TIGR02352, Glycine_oxidase, glycine oxidase ThiO	NA|470aa|down_0|NC_017530.1_754040_755450_-	PRK06169, PRK06169, putative amidase; Provisional	NA|422aa|down_1|NC_017530.1_755451_756717_-	PRK12893, PRK12893, Zn-dependent hydrolase	NA|232aa|down_2|NC_017530.1_756881_757577_-	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|251aa|down_3|NC_017530.1_757576_758329_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|340aa|down_4|NC_017530.1_758328_759348_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|287aa|down_5|NC_017530.1_759349_760210_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|401aa|down_6|NC_017530.1_760275_761478_-	cd20378, PBP1_SBP-like, periplasmic substrate-binding domain of active transport proteins	NA|255aa|down_7|NC_017530.1_761568_762333_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|77aa|down_8|NC_017530.1_762599_762830_-	PRK09459, pspG, envelope stress response protein PspG	NA|340aa|down_9|NC_017530.1_762924_763944_-	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO
GCF_000183645.1_ASM18364v1	NC_017530	Pseudomonas putida BIRD-1, complete sequence	2	787447-787545	2	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	GTGGGGTTCATGGAGCGCTTACGAA	25	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA|235aa|up_6|NC_017530.1_779691_780396_+,NA|195aa|up_4|NC_017530.1_781831_782416_+,NA|97aa|up_2|NC_017530.1_783659_783950_+,NA|385aa|up_1|NC_017530.1_783942_785097_+,NA|214aa|down_0|NC_017530.1_787744_788386_-,NA|71aa|down_2|NC_017530.1_791519_791732_+,NA|233aa|down_3|NC_017530.1_791976_792675_+	NA|403aa|up_9|NC_017530.1_774860_776069_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|137aa|up_8|NC_017530.1_776285_776696_+	pfam00114, Pilin, Pilin (bacterial filament)	NA|385aa|up_7|NC_017530.1_777092_778247_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|235aa|up_6|NC_017530.1_779691_780396_+	NA	NA|278aa|up_5|NC_017530.1_780477_781311_+	pfam10137, TIR-like, Predicted nucleotide-binding protein containing TIR-like domain	NA|195aa|up_4|NC_017530.1_781831_782416_+	NA	NA|340aa|up_3|NC_017530.1_782549_783569_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|97aa|up_2|NC_017530.1_783659_783950_+	NA	NA|385aa|up_1|NC_017530.1_783942_785097_+	NA	NA|511aa|up_0|NC_017530.1_785472_787005_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|214aa|down_0|NC_017530.1_787744_788386_-	NA	NA|669aa|down_1|NC_017530.1_788392_790399_-	COG3972, COG3972, Superfamily I DNA and RNA helicases [General function prediction only]	NA|71aa|down_2|NC_017530.1_791519_791732_+	NA	NA|233aa|down_3|NC_017530.1_791976_792675_+	NA	NA|462aa|down_4|NC_017530.1_792771_794157_-	pfam02447, GntP_permease, GntP family permease	NA|310aa|down_5|NC_017530.1_794589_795519_+	PRK06223, PRK06223, malate dehydrogenase; Reviewed	NA|274aa|down_6|NC_017530.1_795624_796446_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|274aa|down_7|NC_017530.1_796442_797264_-	cd13713, PBP2_Cystine_like_1, Substrate binding domain of putative ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|295aa|down_8|NC_017530.1_797382_798267_+	pfam02574, S-methyl_trans, Homocysteine S-methyltransferase	NA|424aa|down_9|NC_017530.1_798434_799706_+	PRK08249, PRK08249, cystathionine gamma-synthase family protein
GCF_000183645.1_ASM18364v1	NC_017530	Pseudomonas putida BIRD-1, complete sequence	3	1822866-1822972	3	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	GCCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACG	39	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA,NA	NA|253aa|up_9|NC_017530.1_1810851_1811610_-	PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase; Provisional	NA|279aa|up_8|NC_017530.1_1811611_1812448_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|572aa|up_7|NC_017530.1_1812447_1814163_-	PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional	NA|944aa|up_6|NC_017530.1_1814564_1817396_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|179aa|up_5|NC_017530.1_1817388_1817925_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|404aa|up_4|NC_017530.1_1817927_1819139_+	pfam00034, Cytochrom_C, Cytochrome c	NA|324aa|up_3|NC_017530.1_1819142_1820114_+	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|188aa|up_2|NC_017530.1_1820110_1820674_+	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	NA|228aa|up_1|NC_017530.1_1820854_1821538_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|441aa|up_0|NC_017530.1_1821534_1822857_+	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|467aa|down_0|NC_017530.1_1823122_1824523_+	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional	NA|328aa|down_1|NC_017530.1_1824628_1825612_+	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family	NA|2175aa|down_2|NC_017530.1_1825767_1832292_+	PRK12467, PRK12467, peptide synthase; Provisional	NA|2629aa|down_3|NC_017530.1_1832293_1840180_+	PRK05691, PRK05691, peptide synthase; Validated	NA|3470aa|down_4|NC_017530.1_1840340_1850750_+	PRK12467, PRK12467, peptide synthase; Provisional	NA|319aa|down_5|NC_017530.1_1850795_1851752_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|813aa|down_6|NC_017530.1_1851820_1854259_-	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]	NA|553aa|down_7|NC_017530.1_1854345_1856004_-	TIGR01194, ATP-binding_protein_SyrD, cyclic peptide transporter	NA|302aa|down_8|NC_017530.1_1856038_1856944_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|429aa|down_9|NC_017530.1_1856978_1858265_-	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
GCF_000183645.1_ASM18364v1	NC_017530	Pseudomonas putida BIRD-1, complete sequence	4	3669409-3669544	1	PILER-CR	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	CCGCACTTGCCTTCACCACACTTGCCCTCGC	31	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA,NA|361aa|down_9|NC_017530.1_3686868_3687951_+	NA|150aa|up_9|NC_017530.1_3661815_3662265_+	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed	NA|283aa|up_8|NC_017530.1_3662261_3663110_+	PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed	NA|172aa|up_7|NC_017530.1_3663223_3663739_-	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain	NA|92aa|up_6|NC_017530.1_3663749_3664025_-	pfam10976, DUF2790, Protein of unknown function (DUF2790)	NA|247aa|up_5|NC_017530.1_3664245_3664986_+	PRK09468, ompR, osmolarity response regulator; Provisional	NA|429aa|up_4|NC_017530.1_3664982_3666269_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|206aa|up_3|NC_017530.1_3666432_3667050_+	pfam01794, Ferric_reduct, Ferric reductase like transmembrane component	NA|163aa|up_2|NC_017530.1_3667064_3667553_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|232aa|up_1|NC_017530.1_3667586_3668282_-	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|278aa|up_0|NC_017530.1_3668274_3669108_-	PRK05409, PRK05409, hypothetical protein; Provisional	NA|184aa|down_0|NC_017530.1_3669848_3670400_-	pfam13778, DUF4174, Domain of unknown function (DUF4174)	NA|1498aa|down_1|NC_017530.1_3670627_3675121_-	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting	NA|1474aa|down_2|NC_017530.1_3675218_3679640_-	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting	NA|787aa|down_3|NC_017530.1_3679718_3682079_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|397aa|down_4|NC_017530.1_3682145_3683336_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|299aa|down_5|NC_017530.1_3683453_3684350_+	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|307aa|down_6|NC_017530.1_3684330_3685251_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|263aa|down_7|NC_017530.1_3685411_3686200_+	pfam08892, YqcI_YcgG, YqcI/YcgG family	NA|209aa|down_8|NC_017530.1_3686202_3686829_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|361aa|down_9|NC_017530.1_3686868_3687951_+	NA
GCF_000183645.1_ASM18364v1	NC_017530	Pseudomonas putida BIRD-1, complete sequence	5	4149770-4149929	2	PILER-CR	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	CCGGCCCTTTCGCGGGTTTACCCGCGAA	28	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA,NA	NA|324aa|up_9|NC_017530.1_4137521_4138493_-	PRK10550, PRK10550, tRNA dihydrouridine(16) synthase DusC	NA|145aa|up_8|NC_017530.1_4138543_4138978_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|294aa|up_7|NC_017530.1_4139082_4139964_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|180aa|up_6|NC_017530.1_4139979_4140519_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|494aa|up_5|NC_017530.1_4141226_4142708_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|352aa|up_4|NC_017530.1_4142851_4143907_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|497aa|up_3|NC_017530.1_4143956_4145447_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|672aa|up_2|NC_017530.1_4145574_4147590_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|399aa|up_1|NC_017530.1_4147875_4149072_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|134aa|up_0|NC_017530.1_4149268_4149670_-	cd02234, cupin_BLR7677-like, Bradyrhizobium japonicum BLR7677 and related proteins, cupin domain	NA|187aa|down_0|NC_017530.1_4149954_4150515_-	COG3816, COG3816, Uncharacterized protein conserved in bacteria [Function unknown]	NA|202aa|down_1|NC_017530.1_4150525_4151131_-	pfam16105, DUF4823, Domain of unknown function (DUF4823)	NA|323aa|down_2|NC_017530.1_4151197_4152166_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|212aa|down_3|NC_017530.1_4152321_4152957_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|261aa|down_4|NC_017530.1_4153437_4154220_-	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|329aa|down_5|NC_017530.1_4154250_4155237_-	PRK05707, PRK05707, DNA polymerase III subunit delta'; Validated	NA|211aa|down_6|NC_017530.1_4155229_4155862_-	PRK00698, tmk, thymidylate kinase; Validated	NA|412aa|down_7|NC_017530.1_4155871_4157107_-	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism]	NA|272aa|down_8|NC_017530.1_4157111_4157927_-	PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed	NA|415aa|down_9|NC_017530.1_4157926_4159171_-	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II
GCF_000183645.1_ASM18364v1	NC_017530	Pseudomonas putida BIRD-1, complete sequence	6	5508500-5508608	4	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	GTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCC	41	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA|162aa|up_9|NC_017530.1_5497151_5497637_+,NA	NA|162aa|up_9|NC_017530.1_5497151_5497637_+	NA	NA|533aa|up_8|NC_017530.1_5497657_5499256_+	pfam00732, GMC_oxred_N, GMC oxidoreductase	NA|162aa|up_7|NC_017530.1_5499368_5499854_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|84aa|up_6|NC_017530.1_5499955_5500207_+	PRK07118, PRK07118, Fe-S cluster domain-containing protein	NA|271aa|up_5|NC_017530.1_5500368_5501181_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|273aa|up_4|NC_017530.1_5501184_5502003_-	COG1639, COG1639, Predicted signal transduction protein [Signal transduction mechanisms]	NA|399aa|up_3|NC_017530.1_5502178_5503375_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|614aa|up_2|NC_017530.1_5503645_5505487_+	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|352aa|up_1|NC_017530.1_5505725_5506781_-	cd04309, HAD_PSP_eu, phosphoserine phosphatase eukaryotic-like, similar to human phosphoserine phosphatase	NA|464aa|up_0|NC_017530.1_5507025_5508417_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|172aa|down_0|NC_017530.1_5508616_5509132_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|464aa|down_1|NC_017530.1_5509186_5510578_+	pfam11067, DUF2868, Protein of unknown function (DUF2868)	NA|455aa|down_2|NC_017530.1_5510570_5511935_+	pfam11981, DUF3482, Domain of unknown function (DUF3482)	NA|342aa|down_3|NC_017530.1_5512338_5513364_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|575aa|down_4|NC_017530.1_5513382_5515107_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|353aa|down_5|NC_017530.1_5515108_5516167_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|290aa|down_6|NC_017530.1_5516398_5517268_-	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator	NA|755aa|down_7|NC_017530.1_5517277_5519542_-	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase	NA|165aa|down_8|NC_017530.1_5519625_5520120_+	TIGR02047, putative_regulatory_protein, Cd(II)/Pb(II)-responsive transcriptional regulator	NA|324aa|down_9|NC_017530.1_5520186_5521158_-	PRK13821, thyA, thymidylate synthase; Provisional
