assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000183665.1_ASM18366v1	NC_014774	Candidatus Liberibacter solanacearum CLso-ZC1, complete sequence	1	136412-136533	1	CRISPRCasFinder	no		cas3,DEDDh	Orphan	TTAATCAGCTTGGCTAATACTAGCGTTCATAAAAATG	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA,NA	NA|206aa|up_9|NC_014774.1_126692_127310_-	PRK00259, PRK00259, intracellular septation protein A; Reviewed	NA|322aa|up_8|NC_014774.1_127306_128272_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|290aa|up_7|NC_014774.1_128472_129342_-	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|462aa|up_6|NC_014774.1_129620_131006_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|110aa|up_5|NC_014774.1_131388_131718_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|191aa|up_4|NC_014774.1_131835_132408_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|238aa|up_3|NC_014774.1_132404_133118_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|138aa|up_2|NC_014774.1_133290_133704_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|474aa|up_1|NC_014774.1_133980_135402_+	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|298aa|up_0|NC_014774.1_135406_136300_-	COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]	NA|263aa|down_0|NC_014774.1_137259_138048_+	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|166aa|down_1|NC_014774.1_138176_138674_+	cd01055, Nonheme_Ferritin, nonheme-containing ferritins	NA|320aa|down_2|NC_014774.1_138906_139866_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|329aa|down_3|NC_014774.1_139884_140871_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|489aa|down_4|NC_014774.1_140880_142347_-	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|419aa|down_5|NC_014774.1_142372_143629_-	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]	NA|225aa|down_6|NC_014774.1_143660_144335_-	pfam09476, Pilus_CpaD, Pilus biogenesis CpaD protein (pilus_cpaD)	NA|472aa|down_7|NC_014774.1_144331_145747_-	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]	NA|268aa|down_8|NC_014774.1_145743_146547_-	COG3745, CpaB, Flp pilus assembly protein CpaB [Intracellular trafficking and secretion]	NA|179aa|down_9|NC_014774.1_146649_147186_-	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
GCF_000183665.1_ASM18366v1	NC_014774	Candidatus Liberibacter solanacearum CLso-ZC1, complete sequence	2	202013-202111	2	CRISPRCasFinder	no		cas3,DEDDh	Orphan	CACCTGTAGATTTAAAGCCTCTTG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA|173aa|up_9|NC_014774.1_194835_195354_-,NA|120aa|up_6|NC_014774.1_197250_197610_+,NA|190aa|up_5|NC_014774.1_197628_198198_+,NA|80aa|up_4|NC_014774.1_198281_198521_+,NA|85aa|up_2|NC_014774.1_199422_199677_+,NA|58aa|up_1|NC_014774.1_199771_199945_+,NA|153aa|down_0|NC_014774.1_202719_203178_+,NA|78aa|down_1|NC_014774.1_206781_207015_+,NA|129aa|down_2|NC_014774.1_207069_207456_+	NA|173aa|up_9|NC_014774.1_194835_195354_-	NA	NA|60aa|up_8|NC_014774.1_195413_195593_+	PRK02888, PRK02888, nitrous-oxide reductase; Validated	NA|194aa|up_7|NC_014774.1_196505_197087_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|120aa|up_6|NC_014774.1_197250_197610_+	NA	NA|190aa|up_5|NC_014774.1_197628_198198_+	NA	NA|80aa|up_4|NC_014774.1_198281_198521_+	NA	NA|263aa|up_3|NC_014774.1_198614_199403_+	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|85aa|up_2|NC_014774.1_199422_199677_+	NA	NA|58aa|up_1|NC_014774.1_199771_199945_+	NA	NA|247aa|up_0|NC_014774.1_200298_201039_+	pfam10137, TIR-like, Predicted nucleotide-binding protein containing TIR-like domain	NA|153aa|down_0|NC_014774.1_202719_203178_+	NA	NA|78aa|down_1|NC_014774.1_206781_207015_+	NA	NA|129aa|down_2|NC_014774.1_207069_207456_+	NA	NA|389aa|down_3|NC_014774.1_208008_209175_+	pfam10926, DUF2800, Protein of unknown function (DUF2800)	NA|57aa|down_4|NC_014774.1_209245_209416_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|264aa|down_5|NC_014774.1_209451_210243_+	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|215aa|down_6|NC_014774.1_210258_210903_+	pfam10991, DUF2815, Protein of unknown function (DUF2815)	NA|674aa|down_7|NC_014774.1_210906_212928_+	cd08642, DNA_pol_A_pol_I_A, Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication	NA|102aa|down_8|NC_014774.1_212924_213230_+	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain	NA|457aa|down_9|NC_014774.1_213217_214588_+	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins
GCF_000183665.1_ASM18366v1	NC_014774	Candidatus Liberibacter solanacearum CLso-ZC1, complete sequence	3	554350-554455	3	CRISPRCasFinder	no		cas3,DEDDh	Orphan	CAATATACGATATAAACATGTAATAAAAT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA,NA	NA|408aa|up_9|NC_014774.1_541500_542724_+	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA|141aa|up_8|NC_014774.1_542890_543313_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|479aa|up_7|NC_014774.1_544113_545550_+	pfam03219, TLC, TLC ATP/ADP transporter	NA|275aa|up_6|NC_014774.1_545851_546676_-	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC	NA|607aa|up_5|NC_014774.1_546934_548755_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|150aa|up_4|NC_014774.1_549186_549636_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|68aa|up_3|NC_014774.1_549810_550014_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|119aa|up_2|NC_014774.1_550071_550428_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|367aa|up_1|NC_014774.1_550597_551698_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|808aa|up_0|NC_014774.1_551710_554134_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|345aa|down_0|NC_014774.1_554665_555700_+	pfam02530, Porin_2, Porin subfamily	NA|228aa|down_1|NC_014774.1_556400_557084_+	COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|121aa|down_2|NC_014774.1_557584_557947_-	cd18160, REC_CpdR_CckA-like, phosphoacceptor receiver (REC) domain of Brucella abortus CpdR and CckA, and similar domains	NA|177aa|down_3|NC_014774.1_558732_559263_+	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|215aa|down_4|NC_014774.1_560166_560811_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|343aa|down_5|NC_014774.1_561717_562746_-	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|841aa|down_6|NC_014774.1_562967_565490_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|299aa|down_7|NC_014774.1_566025_566922_-	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|215aa|down_8|NC_014774.1_566924_567569_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|432aa|down_9|NC_014774.1_567576_568872_-	PRK09059, PRK09059, dihydroorotase; Validated
GCF_000183665.1_ASM18366v1	NC_014774	Candidatus Liberibacter solanacearum CLso-ZC1, complete sequence	4	611047-611140	4	CRISPRCasFinder	no		cas3,DEDDh	Orphan	TCCTAGCGTAGATTCTTTTGAAGA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA|56aa|up_2|NC_014774.1_609124_609292_+,NA|67aa|up_0|NC_014774.1_609957_610158_-,NA	NA|170aa|up_9|NC_014774.1_602637_603147_-	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]	NA|163aa|up_8|NC_014774.1_603374_603863_+	pfam02620, DUF177, Uncharacterized ACR, COG1399	NA|361aa|up_7|NC_014774.1_604005_605088_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|324aa|up_6|NC_014774.1_605084_606056_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|111aa|up_5|NC_014774.1_606128_606461_+	cd13835, IHF_A, Alpha subunit of integration host factor (IHFA)	NA|207aa|up_4|NC_014774.1_607026_607647_-	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|315aa|up_3|NC_014774.1_607804_608749_+	COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|56aa|up_2|NC_014774.1_609124_609292_+	NA	NA|83aa|up_1|NC_014774.1_609746_609995_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|67aa|up_0|NC_014774.1_609957_610158_-	NA	NA|331aa|down_0|NC_014774.1_612933_613926_-	PRK12607, PRK12607, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|349aa|down_1|NC_014774.1_619554_620601_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|627aa|down_2|NC_014774.1_620726_622607_+	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	NA|385aa|down_3|NC_014774.1_622603_623758_-	PRK14013, PRK14013, hypothetical protein; Provisional	NA|401aa|down_4|NC_014774.1_624112_625315_-	PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated	NA|368aa|down_5|NC_014774.1_625577_626681_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|197aa|down_6|NC_014774.1_626794_627385_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|383aa|down_7|NC_014774.1_627605_628754_+	pfam10098, DUF2336, Uncharacterized protein conserved in bacteria (DUF2336)	NA|362aa|down_8|NC_014774.1_629009_630095_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|682aa|down_9|NC_014774.1_630253_632299_-	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed
GCF_000183665.1_ASM18366v1	NC_014774	Candidatus Liberibacter solanacearum CLso-ZC1, complete sequence	5	1242882-1242980	5	CRISPRCasFinder	no		cas3,DEDDh	Orphan	CACCTGTAGATTTAAAGCCTCTTG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA|82aa|up_9|NC_014774.1_1234993_1235239_-,NA|118aa|up_5|NC_014774.1_1238740_1239094_+,NA|72aa|up_4|NC_014774.1_1239126_1239342_+,NA|85aa|up_2|NC_014774.1_1240291_1240546_+,NA|58aa|up_1|NC_014774.1_1240640_1240814_+,NA|143aa|down_0|NC_014774.1_1243588_1244017_+,NA|78aa|down_1|NC_014774.1_1247653_1247887_+,NA|129aa|down_2|NC_014774.1_1247941_1248328_+	NA|82aa|up_9|NC_014774.1_1234993_1235239_-	NA	NA|211aa|up_8|NC_014774.1_1236170_1236803_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|206aa|up_7|NC_014774.1_1237060_1237678_-	TIGR02794, Protein_TolA, TolA protein	NA|252aa|up_6|NC_014774.1_1237819_1238575_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|118aa|up_5|NC_014774.1_1238740_1239094_+	NA	NA|72aa|up_4|NC_014774.1_1239126_1239342_+	NA	NA|262aa|up_3|NC_014774.1_1239486_1240272_+	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|85aa|up_2|NC_014774.1_1240291_1240546_+	NA	NA|58aa|up_1|NC_014774.1_1240640_1240814_+	NA	NA|247aa|up_0|NC_014774.1_1241167_1241908_+	pfam10137, TIR-like, Predicted nucleotide-binding protein containing TIR-like domain	NA|143aa|down_0|NC_014774.1_1243588_1244017_+	NA	NA|78aa|down_1|NC_014774.1_1247653_1247887_+	NA	NA|129aa|down_2|NC_014774.1_1247941_1248328_+	NA	NA|389aa|down_3|NC_014774.1_1248880_1250047_+	pfam10926, DUF2800, Protein of unknown function (DUF2800)	NA|71aa|down_4|NC_014774.1_1250117_1250330_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|265aa|down_5|NC_014774.1_1250443_1251238_+	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|676aa|down_6|NC_014774.1_1251902_1253930_+	cd08642, DNA_pol_A_pol_I_A, Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication	NA|102aa|down_7|NC_014774.1_1253926_1254232_+	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain	NA|457aa|down_8|NC_014774.1_1254219_1255590_+	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins	NA|128aa|down_9|NC_014774.1_1255592_1255976_+	PRK14351, ligA, NAD-dependent DNA ligase LigA; Provisional
