The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	2791410	328526	372461	2791410	head,tail,portal,terminase,capsid,plate,protease,integrase,holin	Staphylococcus_phage(78.18%)	58	328415:328433	374630:374648
328415:328433	attL	AATCATACAAGGATGGGAT	NA	NA	NA	NA
WP_000264757.1|328526_329732_-|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	97.8	7.5e-218
WP_001108428.1|329834_330485_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000755716.1|330957_331392_-	hypothetical protein	NA	A0A2K9VBS2	Staphylococcus_phage	98.6	1.2e-24
WP_000524999.1|331409_331871_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	3.7e-85
WP_000429766.1|331883_332213_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|332373_332565_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_001001356.1|332652_332829_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_000549547.1|332825_333056_-	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	98.7	6.1e-36
WP_001148592.1|333112_333865_+	phage antirepressor KilAC domain-containing protein	NA	S4SW96	Staphylococcus_phage	98.8	2.4e-137
WP_001202628.1|333880_334078_+	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	93.8	1.9e-22
WP_001124184.1|334222_334486_+	helix-turn-helix domain-containing protein	NA	B7T0G2	Staphylococcus_virus	98.9	1.1e-44
WP_001205781.1|334498_334660_+	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	96.2	3.3e-20
WP_000174996.1|334737_335061_+	hypothetical protein	NA	B7T0G4	Staphylococcus_virus	100.0	8.5e-52
WP_000985978.1|335075_335438_+	hypothetical protein	NA	A7TWG3	Staphylococcus_phage	95.8	3.0e-53
WP_000801407.1|335434_336601_+	DUF2800 domain-containing protein	NA	B7T0G6	Staphylococcus_virus	97.9	9.4e-218
WP_000645046.1|336626_337184_+	DUF2815 family protein	NA	A0A2K9VBT2	Staphylococcus_phage	99.5	2.0e-96
WP_001164628.1|339217_339403_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	98.4	2.1e-26
WP_000113974.1|339402_339804_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022737.1|339803_340058_+	DUF3310 domain-containing protein	NA	A0A059T7J9	Staphylococcus_phage	98.8	6.3e-42
WP_078071252.1|340057_340306_+	hypothetical protein	NA	E9LT32	Staphylococcus_phage	95.0	4.8e-39
WP_000695750.1|340320_340731_+	hypothetical protein	NA	A0A1P8CN10	Staphylococcus_phage	69.1	2.1e-47
WP_101305136.1|340730_341006_+	hypothetical protein	NA	Q4ZA41	Staphylococcus_virus	98.9	6.6e-45
WP_001065080.1|340998_341247_+	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	98.8	1.6e-37
WP_000185699.1|341239_341776_+	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	99.4	1.4e-94
WP_001804400.1|341836_342097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000195824.1|342316_342523_+	DUF1381 domain-containing protein	NA	Q4ZCV6	Staphylococcus_virus	98.5	7.1e-20
WP_000595213.1|342519_342672_+	transcriptional activator RinB	NA	B7T0I1	Staphylococcus_virus	98.0	1.2e-19
WP_000265259.1|342739_342940_+	DUF1514 family protein	NA	A0A2I6PEG6	Staphylococcus_phage	97.0	5.5e-25
WP_000884862.1|342988_345436_+	virulence-associated E family protein	NA	B7T0I3	Staphylococcus_virus	98.4	0.0e+00
WP_078061081.1|345544_345643_-	hypothetical protein	NA	Q4ZCF8	Staphylococcus_virus	96.9	2.2e-11
WP_000665203.1|345776_346067_+	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_000528512.1|347427_347865_+	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_000160690.1|348021_348336_+	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	98.1	1.6e-55
WP_000778933.1|348463_348769_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000153542.1|348758_350450_+|terminase	terminase large subunit	terminase	Q9B0E3	Staphylococcus_virus	99.1	0.0e+00
WP_001100666.1|350454_351693_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	99.3	1.0e-233
WP_000061876.1|351676_352450_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	98.8	4.6e-136
WP_001142731.1|352461_353625_+|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	99.0	1.5e-215
WP_000050976.1|353693_353972_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	98.9	6.0e-46
WP_000395496.1|353983_354316_+	hypothetical protein	NA	M9QX19	Staphylococcus_phage	99.1	2.4e-57
WP_000110017.1|354312_354714_+	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	100.0	1.1e-67
WP_001023807.1|354714_355110_+	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	99.2	1.5e-66
WP_000807538.1|355144_355786_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	98.1	1.8e-117
WP_000169134.1|355877_356333_+	Ig domain-containing protein	NA	Q9B0D4	Staphylococcus_phage	98.0	1.2e-75
WP_000589167.1|356390_356741_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|356782_356941_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_001003409.1|356954_363155_+|tail	phage tail tape measure protein	tail	A0A0K1LKC4	Staphylococcus_phage	98.8	0.0e+00
WP_001190535.1|363154_363979_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	99.6	1.6e-158
WP_000384458.1|363987_365571_+|tail	phage tail protein	tail	Q4ZD01	Staphylococcus_virus	99.1	3.6e-305
WP_000179860.1|365570_365861_+	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000429563.1|365876_367787_+	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	99.4	0.0e+00
WP_000067157.1|367786_369253_+|plate	phage baseplate upper protein	plate	A0A2I6PDQ5	Staphylococcus_phage	97.5	1.8e-250
WP_001166604.1|369252_369642_+	DUF2977 domain-containing protein	NA	Q4ZCZ7	Staphylococcus_virus	96.9	6.4e-62
WP_000916020.1|369634_369799_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466773.1|369844_370144_+	DUF2951 family protein	NA	M9QRV2	Staphylococcus_phage	98.0	2.2e-30
WP_070003492.1|370531_370642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000448764.1|370692_370995_+|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	94.0	3.8e-46
WP_000930277.1|371006_372461_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6WMR3	Staphylococcus_phage	96.1	1.7e-280
374630:374648	attR	AATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	2791410	417446	459094	2791410	transposase,terminase,capsid,coat,protease,integrase	Staphylococcus_phage(80.0%)	49	414527:414542	438568:438583
414527:414542	attL	ATTTGAAAATTACACA	NA	NA	NA	NA
WP_001052483.1|417446_417638_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|417881_418178_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|418198_418702_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|418753_418996_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000270123.1|419236_420466_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	96.2	2.9e-217
WP_000668212.1|420922_421618_-	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	62.5	2.3e-09
WP_000794656.1|421761_421974_+	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	61.4	2.6e-17
WP_000091734.1|421974_422247_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	92.2	3.9e-42
WP_031824147.1|422258_422405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058493.1|422397_422607_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	98.6	5.3e-31
WP_001103963.1|422609_422936_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	89.8	2.3e-49
WP_001002726.1|423000_423870_+	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	94.5	1.4e-162
WP_000447457.1|423883_425593_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	99.5	0.0e+00
WP_000356937.1|425904_426285_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	100.0	6.9e-69
WP_001019787.1|426281_426923_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.4	4.2e-111
WP_001190600.1|427269_427611_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	8.4e-58
WP_000846276.1|427622_428201_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	3.7e-29
WP_000853271.1|428218_428437_+|capsid	capsid morphogenesis B protein	capsid	NA	NA	NA	NA
WP_000765272.1|428487_429015_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	92.0	6.8e-83
WP_078064908.1|429146_429359_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	95.7	1.2e-30
WP_001293094.1|429355_429925_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.3	2.5e-99
WP_000768417.1|430031_430382_+	complement inhibitor SCIN family protein	NA	A7TWS0	Staphylococcus_phage	50.4	2.1e-19
WP_000731022.1|430640_432140_+	von Willebrand factor binding protein Vwb	NA	NA	NA	NA	NA
WP_001804276.1|432550_432733_+	hypothetical protein	NA	Q4ZE84	Staphylococcus_phage	98.3	4.6e-23
WP_000813314.1|432851_433364_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	99.4	5.5e-69
WP_000166620.1|434026_434752_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001080631.1|435391_436399_-	Abi family protein	NA	NA	NA	NA	NA
WP_000475322.1|437316_437928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000849165.1|438296_438665_+	YxeA family protein	NA	NA	NA	NA	NA
438568:438583	attR	ATTTGAAAATTACACA	NA	NA	NA	NA
WP_001055897.1|439555_439819_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000466742.1|440112_440367_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_031901230.1|440405_440615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000158372.1|440792_441374_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_000746682.1|442091_442718_-	NDxxF motif lipoprotein	NA	NA	NA	NA	NA
WP_000930494.1|443162_444686_-	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.2	4.2e-40
WP_000052781.1|444701_445271_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_001279728.1|445762_446518_+	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA	NA
WP_000990998.1|446597_447986_-	L-cystine transporter	NA	NA	NA	NA	NA
WP_031901229.1|448070_448172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956148.1|448961_449918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000394705.1|450035_450698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000763770.1|450840_451248_-	general stress protein	NA	NA	NA	NA	NA
WP_000421405.1|451760_452339_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000793022.1|452338_453607_+	purine permease	NA	NA	NA	NA	NA
WP_000264071.1|453644_455111_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424963.1|455135_456677_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000551645.1|456789_457326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000041877.1|457717_458422_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.6	3.4e-29
WP_000159790.1|458821_459094_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	52.9	2.0e-14
>prophage 3
NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	2791410	770172	777992	2791410		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|770172_771228_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|771227_771914_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|771888_772362_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093558.1|772703_773144_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|773423_774008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062966.1|774106_774820_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	5.0e-52
WP_000941336.1|774823_775243_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|775244_775913_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604519.1|776263_776857_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	5.8e-38
WP_001217797.1|776840_777992_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 4
NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	2791410	789964	804509	2791410		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663031.1|789964_791023_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
WP_000197268.1|791317_791866_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429017.1|792467_793385_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	3.7e-07
WP_000193751.1|793665_795171_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930015.1|795517_796012_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.8e-52
WP_001068497.1|796031_796898_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|797697_798096_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855518.1|798058_800164_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|800281_801253_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_031901244.1|801642_801798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|801836_802808_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245571.1|802794_803751_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	7.2e-06
WP_000616869.1|803747_804509_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
>prophage 5
NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	2791410	1049299	1057772	2791410		Synechococcus_phage(33.33%)	9	NA	NA
WP_025174670.1|1049299_1049782_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	1.2e-20
WP_001010393.1|1049768_1050893_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174052.1|1050896_1051601_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.8e-47
WP_000848350.1|1051600_1051864_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1051865_1052537_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_043039658.1|1052529_1054719_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.3e-140
WP_000483719.1|1054697_1056182_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	5.5e-45
WP_000030807.1|1056174_1057203_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	6.5e-61
WP_000238667.1|1057205_1057772_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	8.0e-29
>prophage 6
NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	2791410	1607041	1615353	2791410	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1607041_1607827_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924215.1|1607952_1608843_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062177.1|1608852_1610199_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683919.1|1610312_1611413_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624562.1|1611415_1612093_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1612223_1613330_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217249.1|1613553_1615353_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 7
NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	2791410	1684948	1693991	2791410	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1684948_1685467_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594980.1|1685488_1687762_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	4.7e-64
WP_000749803.1|1687964_1690244_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1690518_1690779_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1690797_1691937_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019179.1|1691959_1692985_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1692986_1693991_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	2791410	1819238	1886383	2791410	transposase,tRNA,protease	Staphylococcus_phage(90.24%)	55	NA	NA
WP_101305148.1|1819238_1825796_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.7	1.8e-302
WP_000836469.1|1826122_1826434_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_001803813.1|1826455_1828873_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025061.1|1829160_1830342_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526536.1|1830451_1831405_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764421.1|1831401_1831965_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	2.7e-101
WP_000757540.1|1832084_1832486_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1833059_1833887_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1833889_1834009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1834120_1835122_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1835243_1835708_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159026.1|1835720_1836902_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.9e-226
WP_000493882.1|1836912_1837545_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	1.1e-111
WP_000077346.1|1837551_1838595_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261655.1|1839075_1840578_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.1e-29
WP_000221182.1|1841099_1841414_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	3.7e-52
WP_000989111.1|1841413_1842706_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	98.1	1.0e-225
WP_000163240.1|1842723_1843119_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	2.4e-72
WP_001032833.1|1843467_1844322_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1844597_1844822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001153740.1|1845599_1846043_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1846029_1846473_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168908.1|1846770_1847406_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1847831_1848545_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1848802_1849105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200548.1|1849360_1849726_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	97.5	3.1e-58
WP_000623471.1|1849722_1850076_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453299.1|1850325_1851159_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000366159.1|1851370_1852279_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	4.4e-138
WP_050963930.1|1852422_1853739_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.0	9.2e-44
WP_000933822.1|1853908_1855102_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109901.1|1855473_1857066_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_001803969.1|1857362_1858109_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	1.6e-141
WP_000669096.1|1858113_1858587_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	97.5	6.1e-83
WP_000718107.1|1858652_1858910_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778531.1|1858906_1859908_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	1.9e-182
WP_000348361.1|1859912_1861391_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	5.8e-281
WP_001803971.1|1861549_1862005_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	2.8e-77
WP_001803972.1|1862307_1862958_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	78.7	2.5e-50
WP_000070662.1|1863038_1864034_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	95.6	4.3e-70
WP_000669042.1|1864109_1864736_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.8	3.3e-76
WP_000627545.1|1864776_1865121_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000414228.1|1865218_1865791_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	1.2e-24
WP_000190484.1|1866166_1867003_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000809858.1|1867808_1867994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1867995_1868172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1868182_1868566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000747809.1|1869252_1869699_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001801861.1|1870150_1870246_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791232.1|1870368_1870470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072598.1|1876006_1877206_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	97.7	3.7e-225
WP_001038722.1|1879116_1879836_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	97.5	7.3e-128
WP_101305149.1|1880738_1881461_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	95.0	9.0e-126
WP_001039436.1|1881585_1882293_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.2	8.2e-124
WP_101305150.1|1884865_1886383_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	50.9	2.2e-49
>prophage 9
NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	2791410	1917260	1991800	2791410	transposase,head,tail,portal,capsid,tRNA,terminase,protease,integrase,holin	Staphylococcus_phage(76.27%)	80	1959808:1959822	1993357:1993371
WP_000181394.1|1917260_1917731_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_000379980.1|1917735_1918863_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000590809.1|1919013_1919736_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000649894.1|1919728_1921186_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063549.1|1921443_1922505_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000110011.1|1931314_1931761_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869470.1|1931857_1932808_-	phosphoglycerate dehydrogenase	NA	NA	NA	NA	NA
WP_000939525.1|1932813_1933269_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_001011598.1|1933349_1934639_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|1934931_1936026_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000597246.1|1936215_1937952_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	2.2e-53
WP_000251253.1|1938242_1938785_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284739.1|1939087_1940125_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379098.1|1940276_1941254_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886457.1|1941514_1942351_-	membrane protein	NA	NA	NA	NA	NA
WP_000535832.1|1942359_1943877_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000435806.1|1943891_1944206_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124431.1|1944183_1945002_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000830380.1|1945262_1946072_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_078071271.1|1946329_1947847_+|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	50.9	2.2e-49
WP_000163283.1|1948015_1948531_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|1948660_1948822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101305152.1|1949148_1949250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000593870.1|1949294_1950296_-	restriction endonuclease subunit S	NA	A0A1W6JNN3	Staphylococcus_phage	40.1	1.0e-55
WP_001003361.1|1950279_1952172_-	N-6 DNA methylase	NA	A0A1W6JNK1	Staphylococcus_phage	70.9	5.6e-268
WP_000669581.1|1952683_1953652_-	bi-component leukocidin LukMF' subunit F'	NA	Q9MBN2	Staphylococcus_prophage	99.7	7.7e-181
WP_000476436.1|1953653_1954580_-	bi-component leukocidin LukMF' subunit M	NA	Q9MBN3	Staphylococcus_prophage	99.7	4.2e-176
WP_000861033.1|1954928_1955684_-	CHAP domain-containing protein	NA	Q9MBN4	Staphylococcus_prophage	100.0	3.4e-152
WP_000611513.1|1955695_1955950_-|holin	phage holin	holin	Q9MBN5	Staphylococcus_prophage	100.0	5.3e-41
WP_000539688.1|1956488_1956785_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|1956842_1957130_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153680.1|1957176_1957329_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	98.0	1.2e-19
WP_000582145.1|1957318_1961104_-	hypothetical protein	NA	D2JLF9	Staphylococcus_phage	95.6	0.0e+00
1959808:1959822	attL	ATTTTTCAACATCAT	NA	NA	NA	NA
WP_001154314.1|1961119_1962610_-|tail	phage tail family protein	tail	D2JLF8	Staphylococcus_phage	99.0	1.4e-295
WP_001133544.1|1962609_1967259_-|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	94.8	0.0e+00
WP_000571956.1|1967315_1967438_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	97.5	2.6e-14
WP_000442599.1|1967497_1967944_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	98.6	3.0e-71
WP_000570643.1|1968008_1968962_-	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	99.4	3.1e-174
WP_000611453.1|1968962_1969343_-	hypothetical protein	NA	Q9MBP5	Staphylococcus_prophage	99.2	1.0e-67
WP_000501245.1|1969339_1969717_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	99.2	6.9e-61
WP_025174659.1|1969716_1970052_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	98.2	7.4e-59
WP_001177485.1|1970038_1970371_-|head,tail	phage head-tail connector protein	head,tail	D2JLF0	Staphylococcus_phage	98.2	1.2e-56
WP_001252099.1|1970379_1970538_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849948.1|1970573_1971821_-|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	97.1	2.5e-208
WP_000032523.1|1971908_1972493_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	99.5	2.9e-106
WP_000511060.1|1972485_1973736_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	99.3	1.4e-235
WP_000365298.1|1973741_1973942_-	hypothetical protein	NA	A0A1P8L6D3	Staphylococcus_phage	97.0	4.9e-26
WP_000133309.1|1973955_1975650_-|terminase	phage terminase family protein	terminase	D2JLE4	Staphylococcus_phage	99.8	0.0e+00
WP_000919023.1|1975652_1976120_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	98.1	4.8e-80
WP_001803930.1|1976248_1976593_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	97.4	1.0e-63
WP_000406189.1|1976608_1977061_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	98.7	3.9e-79
WP_000282752.1|1977175_1977637_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	1.1e-68
WP_000265040.1|1977659_1977860_-	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	98.5	2.4e-28
WP_001005261.1|1977859_1978510_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	98.1	3.8e-115
WP_000595250.1|1978668_1978818_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	1.4e-17
WP_000195765.1|1978814_1979021_-	DUF1381 domain-containing protein	NA	A0A2D1G5K8	Staphylococcus_phage	69.1	4.3e-17
WP_000185673.1|1979057_1979570_-	dUTP diphosphatase	NA	B2ZYX2	Staphylococcus_phage	69.3	9.7e-58
WP_000066809.1|1979562_1979805_-	hypothetical protein	NA	Q8SDV4	Staphylococcus_phage	91.2	7.3e-32
WP_001065204.1|1979804_1980047_-	DUF1024 family protein	NA	Q9G013	Staphylococcus_virus	96.2	7.1e-35
WP_001105591.1|1980039_1980324_-	hypothetical protein	NA	Q9MBR2	Staphylococcus_prophage	94.6	2.8e-43
WP_101305153.1|1980338_1980581_-	hypothetical protein	NA	A0A2I6PDB4	Staphylococcus_phage	95.0	8.1e-39
WP_101305154.1|1980895_1981081_-	DUF3113 family protein	NA	M9NSS9	Staphylococcus_phage	95.1	5.1e-25
WP_001123688.1|1981501_1981723_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_001132243.1|1982708_1983065_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
WP_101305155.1|1984147_1984495_-	single-stranded DNA-binding protein	NA	A0A0E3XC62	Staphylococcus_phage	97.3	4.0e-55
WP_001043063.1|1984494_1985133_-	ERF family protein	NA	Q9MBS2	Staphylococcus_prophage	100.0	1.7e-115
WP_000002514.1|1985132_1985612_-	siphovirus Gp157 family protein	NA	R4IFK3	Staphylococcus_phage	98.7	5.8e-81
WP_000291086.1|1985626_1985887_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	97.7	1.7e-42
WP_000048119.1|1985980_1986142_-	DUF1270 family protein	NA	A0A059T7J6	Staphylococcus_phage	98.1	4.3e-20
WP_001124184.1|1986154_1986418_-	helix-turn-helix domain-containing protein	NA	B7T0G2	Staphylococcus_virus	98.9	1.1e-44
WP_001202628.1|1986562_1986760_-	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	93.8	1.9e-22
WP_101305156.1|1986775_1987525_-	phage antirepressor KilAC domain-containing protein	NA	A0A1W6JPN2	Staphylococcus_phage	99.2	2.9e-135
WP_000498529.1|1987585_1987828_+	hypothetical protein	NA	Q4ZCA7	Staphylococcus_virus	50.0	2.8e-15
WP_001025399.1|1987775_1988084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000854067.1|1988099_1988369_-	helix-turn-helix transcriptional regulator	NA	H9A0Y0	Staphylococcus_phage	95.5	1.1e-39
WP_001031451.1|1988502_1989216_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	96.6	1.0e-126
WP_001049401.1|1989227_1989374_+	hypothetical protein	NA	U5U441	Staphylococcus_phage	100.0	4.3e-19
WP_000100503.1|1989370_1989556_+	hypothetical protein	NA	A0A1X9H0K5	Staphylococcus_phage	100.0	1.1e-24
WP_000439124.1|1989591_1990575_+	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	92.0	9.9e-168
WP_001145714.1|1990753_1991800_+|integrase	site-specific integrase	integrase	Q4ZDS8	Staphylococcus_virus	98.9	8.0e-200
1993357:1993371	attR	ATTTTTCAACATCAT	NA	NA	NA	NA
