assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000190555.1_ASM19055v1	NC_015161	Deinococcus proteolyticus MRP, complete sequence	1	385086-385358	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		WYL,DEDDh,csa3,cas3	Orphan	CGGAACATCCCCGCCTGCACGGGGAAAAC,CGGAACATCCCCGCCTGCACGGGGAAAAC,CGGAACATCCCCGCCTGCACGGGGAAAAC	29,29,29	0	0	NA	NA	NA:NA:NA	4,4,4	4	Orphan	WYL,DEDDh,csa3,cas3,cas14j,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|158aa|up_3|NC_015161.1_381372_381846_+,NA	NA|150aa|up_9|NC_015161.1_375863_376313_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|151aa|up_8|NC_015161.1_376346_376799_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|374aa|up_7|NC_015161.1_376795_377917_+	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional	NA|374aa|up_6|NC_015161.1_377944_379066_+	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism]	NA|418aa|up_5|NC_015161.1_379134_380388_-	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|293aa|up_4|NC_015161.1_380471_381350_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|158aa|up_3|NC_015161.1_381372_381846_+	NA	NA|377aa|up_2|NC_015161.1_381870_383001_-	COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]	NA|390aa|up_1|NC_015161.1_382997_384167_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|289aa|up_0|NC_015161.1_384217_385084_+	pfam04439, Adenyl_transf, Streptomycin adenylyltransferase	NA|586aa|down_0|NC_015161.1_385447_387205_-	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|623aa|down_1|NC_015161.1_387456_389325_+	TIGR00118, Probable_acetolactate_synthase_large_subunit, acetolactate synthase, large subunit, biosynthetic type	NA|201aa|down_2|NC_015161.1_389321_389924_+	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed	NA|337aa|down_3|NC_015161.1_390003_391014_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|525aa|down_4|NC_015161.1_391095_392670_+	PRK09224, PRK09224, threonine ammonia-lyase IlvA	NA|278aa|down_5|NC_015161.1_392723_393557_-	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|184aa|down_6|NC_015161.1_393760_394312_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|245aa|down_7|NC_015161.1_394376_395111_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|267aa|down_8|NC_015161.1_395276_396077_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|267aa|down_9|NC_015161.1_396255_397056_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional
GCF_000190555.1_ASM19055v1	NC_015170	Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence	1	5412-5768	1	CRT	no		WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	CCGACACCTTTGGGCCGTTTT	21	0	0	NA	NA	NA	5	5	Orphan	WYL,DEDDh,csa3,cas3,cas14j,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|192aa|up_4|NC_015170.1_166_742_+,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|192aa|up_4|NC_015170.1_166_742_+	NA	NA|266aa|up_3|NC_015170.1_826_1624_+	pfam03746, LamB_YcsF, LamB/YcsF family	NA|500aa|up_2|NC_015170.1_1595_3095_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|403aa|up_1|NC_015170.1_3192_4401_+	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|275aa|up_0|NC_015170.1_4471_5296_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|472aa|down_0|NC_015170.1_5911_7327_+	COG5534, COG5534, Plasmid replication initiator protein [DNA replication, recombination, and repair]	NA|385aa|down_1|NC_015170.1_7641_8796_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|919aa|down_2|NC_015170.1_8695_11452_-	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|274aa|down_3|NC_015170.1_11614_12436_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|356aa|down_4|NC_015170.1_12474_13542_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|369aa|down_5|NC_015170.1_13733_14840_+	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa	NA|357aa|down_6|NC_015170.1_15037_16108_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|145aa|down_7|NC_015170.1_16249_16684_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|319aa|down_8|NC_015170.1_16680_17637_+	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|322aa|down_9|NC_015170.1_17782_18748_+	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins
GCF_000190555.1_ASM19055v1	NC_015170	Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence	2	53434-53766	1,1,2	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GGAACATCCCCGCCCACACGGGGAAAAC,GGAACATCCCCGCCCACACGGGGAAAAC,GGAACATCCCCGCNCACACGGGGAAAAC	28,28,28	0	0	NA	NA	NA:NA:NA	5,5,5	5	TypeI-E	WYL,DEDDh,csa3,cas3,cas14j,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|408aa|up_9|NC_015170.1_39409_40633_+,NA|98aa|up_5|NC_015170.1_45750_46044_-,NA|49aa|down_0|NC_015170.1_54093_54240_+	NA|408aa|up_9|NC_015170.1_39409_40633_+	NA	NA|382aa|up_8|NC_015170.1_40737_41883_+	pfam13795, HupE_UreJ_2, HupE / UreJ protein	NA|788aa|up_7|NC_015170.1_41923_44287_-	cd01948, EAL, EAL domain	NA|409aa|up_6|NC_015170.1_44431_45658_-	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|98aa|up_5|NC_015170.1_45750_46044_-	NA	NA|569aa|up_4|NC_015170.1_46046_47753_-	COG3211, PhoX, Predicted phosphatase [General function prediction only]	NA|437aa|up_3|NC_015170.1_47958_49269_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|535aa|up_2|NC_015170.1_49506_51111_-	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional	NA|383aa|up_1|NC_015170.1_51164_52313_-	PRK03080, PRK03080, phosphoserine transaminase	NA|293aa|up_0|NC_015170.1_52439_53318_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|49aa|down_0|NC_015170.1_54093_54240_+	NA	NA|567aa|down_1|NC_015170.1_54289_55990_+	pfam17874, TPR_MalT, MalT-like TPR region	WYL|340aa|down_2|NC_015170.1_56068_57088_+	pfam13280, WYL, WYL domain	cas3|964aa|down_3|NC_015170.1_57069_59961_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|511aa|down_4|NC_015170.1_60135_61668_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	NA|358aa|down_5|NC_015170.1_61607_62681_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|93aa|down_6|NC_015170.1_62776_63055_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|215aa|down_7|NC_015170.1_63089_63734_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|211aa|down_8|NC_015170.1_63730_64363_+	pfam09344, Cas_CT1975, CT1975-like protein	NA|262aa|down_9|NC_015170.1_64380_65166_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain
GCF_000190555.1_ASM19055v1	NC_015170	Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence	3	68585-68675	2	CRISPRCasFinder	no	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTTTTCCCCGTGTGTGCGGGGATGTTCCGG	30	0	0	NA	NA	NA	1	1	TypeI-E	WYL,DEDDh,csa3,cas3,cas14j,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|404aa|down_1|NC_015170.1_70265_71477_-,NA|458aa|down_5|NC_015170.1_75632_77006_+,NA|52aa|down_8|NC_015170.1_79307_79463_+	cas8e|511aa|up_9|NC_015170.1_60135_61668_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	NA|358aa|up_8|NC_015170.1_61607_62681_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|93aa|up_7|NC_015170.1_62776_63055_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|215aa|up_6|NC_015170.1_63089_63734_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|211aa|up_5|NC_015170.1_63730_64363_+	pfam09344, Cas_CT1975, CT1975-like protein	NA|262aa|up_4|NC_015170.1_64380_65166_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	cas5|235aa|up_3|NC_015170.1_65874_66579_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|up_2|NC_015170.1_66578_67226_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|316aa|up_1|NC_015170.1_67229_68177_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|115aa|up_0|NC_015170.1_68173_68518_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|413aa|down_0|NC_015170.1_68723_69962_-	PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated	NA|404aa|down_1|NC_015170.1_70265_71477_-	NA	NA|424aa|down_2|NC_015170.1_71612_72884_-	PRK09379, PRK09379, LytR family transcriptional regulator	NA|418aa|down_3|NC_015170.1_73218_74472_+	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	NA|388aa|down_4|NC_015170.1_74472_75636_+	cd03812, GT4_CapH-like, capsular polysaccharide biosynthesis glycosyltransferase CapH and similar proteins	NA|458aa|down_5|NC_015170.1_75632_77006_+	NA	NA|396aa|down_6|NC_015170.1_77009_78197_+	pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1	NA|376aa|down_7|NC_015170.1_78193_79321_+	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|52aa|down_8|NC_015170.1_79307_79463_+	NA	NA|342aa|down_9|NC_015170.1_79571_80597_-	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs
GCF_000190555.1_ASM19055v1	NC_015169	Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence	1	197312-198572	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		csa3	Orphan	GTTTCAATCCTCACCCAGCCCGAAGGCCGGGTGCAAC,GTTTCAATCCTCACCCAGCCCGAAGGCCGGGTGCAAC,GTTTCAATCCTCACCCAGCCCGAAGGCCGGGTGCAAC	37,37,37	0	0	NA	NA	I-C:I-C:I-C	17,17,16	17	Orphan	WYL,DEDDh,csa3,cas3,cas14j,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|308aa|up_8|NC_015169.1_186453_187377_-,NA|273aa|down_5|NC_015169.1_205319_206138_+	NA|424aa|up_9|NC_015169.1_185185_186457_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|308aa|up_8|NC_015169.1_186453_187377_-	NA	NA|361aa|up_7|NC_015169.1_187373_188456_-	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|256aa|up_6|NC_015169.1_189994_190762_-	TIGR01963, D-beta-hydroxybutyrate_dehydrogenase, 3-hydroxybutyrate dehydrogenase	NA|315aa|up_5|NC_015169.1_190886_191831_-	pfam05661, DUF808, Protein of unknown function (DUF808)	NA|92aa|up_4|NC_015169.1_192007_192283_-	pfam13098, Thioredoxin_2, Thioredoxin-like domain	NA|349aa|up_3|NC_015169.1_192275_193322_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|696aa|up_2|NC_015169.1_193429_195517_-	TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate reductase, class 1b, alpha subunit	NA|120aa|up_1|NC_015169.1_195602_195962_-	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|335aa|up_0|NC_015169.1_196235_197240_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|287aa|down_0|NC_015169.1_198775_199636_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|311aa|down_1|NC_015169.1_199653_200586_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|484aa|down_2|NC_015169.1_200662_202114_-	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|285aa|down_3|NC_015169.1_203107_203962_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|287aa|down_4|NC_015169.1_204024_204885_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|273aa|down_5|NC_015169.1_205319_206138_+	NA	NA|418aa|down_6|NC_015169.1_206216_207470_+	pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase	NA|257aa|down_7|NC_015169.1_207503_208274_-	pfam04474, DUF554, Protein of unknown function (DUF554)	NA|326aa|down_8|NC_015169.1_208384_209362_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|1057aa|down_9|NC_015169.1_209345_212516_-	COG1511, COG1511, Predicted membrane protein [Function unknown]
GCF_000190555.1_ASM19055v1	NC_015163	Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence	1	46414-46666	1	CRT	no			Orphan	CGACGACATAGTTGAGCGATT	21	0	0	NA	NA	NA	4	4	Orphan	WYL,DEDDh,csa3,cas3,cas14j,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|180aa|up_7|NC_015163.1_37718_38258_+,NA|61aa|up_2|NC_015163.1_41994_42177_+,NA|373aa|down_3|NC_015163.1_50442_51561_-,NA|80aa|down_6|NC_015163.1_54383_54623_-,NA|177aa|down_7|NC_015163.1_56765_57296_-	NA|280aa|up_9|NC_015163.1_36113_36953_-	pfam00665, rve, Integrase core domain	NA|96aa|up_8|NC_015163.1_36985_37273_-	pfam01527, HTH_Tnp_1, Transposase	NA|180aa|up_7|NC_015163.1_37718_38258_+	NA	NA|162aa|up_6|NC_015163.1_38458_38944_+	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|222aa|up_5|NC_015163.1_39015_39681_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|372aa|up_4|NC_015163.1_39684_40800_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|134aa|up_3|NC_015163.1_41400_41802_-	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria	NA|61aa|up_2|NC_015163.1_41994_42177_+	NA	NA|238aa|up_1|NC_015163.1_42216_42930_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|196aa|up_0|NC_015163.1_44550_45138_-	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|457aa|down_0|NC_015163.1_46786_48157_+	pfam10134, RPA, Replication initiator protein A	NA|308aa|down_1|NC_015163.1_48223_49147_-	cd16393, SPO0J_N, Thermus thermophilus stage 0 sporulation protein J-like N-terminal domain, ParB family member	NA|256aa|down_2|NC_015163.1_49143_49911_-	pfam13614, AAA_31, AAA domain	NA|373aa|down_3|NC_015163.1_50442_51561_-	NA	NA|409aa|down_4|NC_015163.1_51758_52985_-	pfam05626, DUF790, Protein of unknown function (DUF790)	NA|458aa|down_5|NC_015163.1_52971_54345_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|80aa|down_6|NC_015163.1_54383_54623_-	NA	NA|177aa|down_7|NC_015163.1_56765_57296_-	NA	NA|200aa|down_8|NC_015163.1_58477_59077_+	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|222aa|down_9|NC_015163.1_59100_59766_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
