assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000191505.1_ASM19150v1	NC_017515	Neisseria meningitidis M04-240196, complete sequence	1	55814-55925	1	CRISPRCasFinder	no		DinG,csa3,DEDDh,c2c4_V-U1,cas3	Orphan	TTTCGTGGGAATGACGGAATGTAGGTTCGTGGGAATGACGG	41	1	17	55855-55884|55855-55884|55855-55884|55855-55884|55855-55884|55855-55884|55855-55884|55855-55884|55855-55884|55855-55884|55855-55884|55855-55884|55855-55884|55855-55884|55855-55884|55855-55884|55855-55884	NC_017515.1_2008708-2008737|NC_017515.1_16881-16910|NC_017515.1_55632-55661|NC_017515.1_413937-413966|NC_017515.1_466647-466676|NC_017515.1_638325-638354|NC_017515.1_762641-762612|NC_017515.1_856977-856948|NC_017515.1_857470-857441|NC_017515.1_1351123-1351094|NC_017515.1_1561207-1561178|NC_017515.1_1561596-1561567|NC_017515.1_1561877-1561848|NC_017515.1_2144021-2144050|NC_017515.1_481957-481928|NC_017515.1_484077-484048|NC_017515.1_1218445-1218416	NA	1	1	Orphan	DinG,csa3,DEDDh,c2c4_V-U1,cas3	NA|101aa|up_5|NC_017515.1_48596_48899_-,NA|77aa|up_4|NC_017515.1_48926_49157_-,NA|67aa|up_3|NC_017515.1_49394_49595_-,NA|104aa|up_2|NC_017515.1_49598_49910_-,NA|136aa|down_4|NC_017515.1_61694_62102_+	NA|396aa|up_9|NC_017515.1_44877_46065_-	pfam05707, Zot, Zonular occludens toxin (Zot)	NA|95aa|up_8|NC_017515.1_46065_46350_-	pfam10734, DUF2523, Protein of unknown function (DUF2523)	NA|512aa|up_7|NC_017515.1_46653_48189_-	pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein	NA|105aa|up_6|NC_017515.1_48166_48481_-	pfam06575, DUF1132, Protein of unknown function (DUF1132)	NA|101aa|up_5|NC_017515.1_48596_48899_-	NA	NA|77aa|up_4|NC_017515.1_48926_49157_-	NA	NA|67aa|up_3|NC_017515.1_49394_49595_-	NA	NA|104aa|up_2|NC_017515.1_49598_49910_-	NA	NA|403aa|up_1|NC_017515.1_49930_51139_-	COG2946, COG2946, Putative phage replication protein RstA [DNA replication, recombination, and repair]	NA|1004aa|up_0|NC_017515.1_51902_54914_+	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]	NA|717aa|down_0|NC_017515.1_56020_58171_-	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein	NA|409aa|down_1|NC_017515.1_58456_59683_-	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	NA|348aa|down_2|NC_017515.1_59845_60889_-	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|235aa|down_3|NC_017515.1_61008_61713_+	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins	NA|136aa|down_4|NC_017515.1_61694_62102_+	NA	NA|264aa|down_5|NC_017515.1_62150_62942_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|139aa|down_6|NC_017515.1_63088_63505_+	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA	NA|155aa|down_7|NC_017515.1_69326_69791_+	TIGR01259, ComE_operon_protein_1, comEA protein	NA|374aa|down_8|NC_017515.1_70059_71181_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|673aa|down_9|NC_017515.1_71376_73395_+	COG1297, COG1297, Predicted membrane protein [Function unknown]
GCF_000191505.1_ASM19150v1	NC_017515	Neisseria meningitidis M04-240196, complete sequence	2	202041-202139	2	CRISPRCasFinder	no		DinG,csa3,DEDDh,c2c4_V-U1,cas3	Orphan	CGTCATTTCCGCGCAGGCGGGAATCC	26	0	0	NA	NA	I-E	1	1	Orphan	DinG,csa3,DEDDh,c2c4_V-U1,cas3	NA|82aa|up_4|NC_017515.1_196318_196564_-,NA|82aa|down_3|NC_017515.1_208644_208890_+,NA|137aa|down_4|NC_017515.1_208891_209302_+	NA|249aa|up_9|NC_017515.1_190481_191228_-	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase	NA|186aa|up_8|NC_017515.1_191283_191841_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|376aa|up_7|NC_017515.1_192021_193149_-	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|208aa|up_6|NC_017515.1_194139_194763_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|258aa|up_5|NC_017515.1_194861_195635_+	pfam13614, AAA_31, AAA domain	NA|82aa|up_4|NC_017515.1_196318_196564_-	NA	NA|195aa|up_3|NC_017515.1_196576_197161_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|632aa|up_2|NC_017515.1_197228_199124_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|476aa|up_1|NC_017515.1_199448_200876_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|330aa|up_0|NC_017515.1_201035_202025_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|920aa|down_0|NC_017515.1_203171_205931_-	PRK10811, rne, ribonuclease E; Reviewed	NA|331aa|down_1|NC_017515.1_206424_207417_+	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA|391aa|down_2|NC_017515.1_207464_208637_+	COG0763, LpxB, Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]	NA|82aa|down_3|NC_017515.1_208644_208890_+	NA	NA|137aa|down_4|NC_017515.1_208891_209302_+	NA	NA|270aa|down_5|NC_017515.1_209550_210360_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|126aa|down_6|NC_017515.1_210369_210747_-	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]	NA|145aa|down_7|NC_017515.1_210965_211400_+	PRK09462, fur, ferric uptake regulator; Provisional	NA|242aa|down_8|NC_017515.1_211469_212195_+	COG2360, Aat, Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]	NA|344aa|down_9|NC_017515.1_212448_213480_-	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
GCF_000191505.1_ASM19150v1	NC_017515	Neisseria meningitidis M04-240196, complete sequence	3	292324-292502	3	CRISPRCasFinder	no	DinG	DinG,csa3,DEDDh,c2c4_V-U1,cas3	Type IV-A	CGTCATTCCTGCGAAAGCGGGAATCTAG	28	0	0	NA	NA	I-E	2	2	Orphan	DinG,csa3,DEDDh,c2c4_V-U1,cas3	NA|64aa|up_4|NC_017515.1_286364_286556_-,NA|75aa|down_6|NC_017515.1_302986_303211_+	NA|263aa|up_9|NC_017515.1_278396_279185_+	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC	NA|767aa|up_8|NC_017515.1_280540_282841_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|261aa|up_7|NC_017515.1_282905_283688_-	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|319aa|up_6|NC_017515.1_283738_284695_-	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|513aa|up_5|NC_017515.1_284826_286365_-	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only]	NA|64aa|up_4|NC_017515.1_286364_286556_-	NA	NA|233aa|up_3|NC_017515.1_286582_287281_+	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold	NA|335aa|up_2|NC_017515.1_287337_288342_-	COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]	NA|803aa|up_1|NC_017515.1_288411_290820_+	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]	NA|387aa|up_0|NC_017515.1_290924_292085_+	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|627aa|down_0|NC_017515.1_293594_295475_-	COG0557, VacB, Exoribonuclease R [Transcription]	NA|211aa|down_1|NC_017515.1_295783_296416_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|457aa|down_2|NC_017515.1_296487_297858_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|623aa|down_3|NC_017515.1_297937_299806_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|205aa|down_4|NC_017515.1_300086_300701_-	COG2979, COG2979, Uncharacterized protein conserved in bacteria [Function unknown]	DinG|717aa|down_5|NC_017515.1_300736_302887_-	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional	NA|75aa|down_6|NC_017515.1_302986_303211_+	NA	NA|434aa|down_7|NC_017515.1_303278_304580_-	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|304aa|down_8|NC_017515.1_304569_305481_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|133aa|down_9|NC_017515.1_305588_305987_+	COG2259, COG2259, Predicted membrane protein [Function unknown]
GCF_000191505.1_ASM19150v1	NC_017515	Neisseria meningitidis M04-240196, complete sequence	4	1885879-1885977	4	CRISPRCasFinder	no		DinG,csa3,DEDDh,c2c4_V-U1,cas3	Orphan	GCCGTCATTCCCGCGCAGGCAGAAATCCA	29	0	0	NA	NA	I-E	1	1	Orphan	DinG,csa3,DEDDh,c2c4_V-U1,cas3	NA,NA	NA|396aa|up_9|NC_017515.1_1873040_1874228_-	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|651aa|up_8|NC_017515.1_1874220_1876173_-	COG1333, ResB, ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]	NA|208aa|up_7|NC_017515.1_1876449_1877073_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|210aa|up_6|NC_017515.1_1877278_1877908_+	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|799aa|up_5|NC_017515.1_1878028_1880425_-	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|372aa|up_4|NC_017515.1_1880576_1881692_+	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]	NA|200aa|up_3|NC_017515.1_1881694_1882294_+	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|216aa|up_2|NC_017515.1_1882294_1882942_+	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]	NA|182aa|up_1|NC_017515.1_1882959_1883505_+	COG3168, PilP, Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]	NA|762aa|up_0|NC_017515.1_1883523_1885809_+	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion]	NA|171aa|down_0|NC_017515.1_1886986_1887499_+	PRK00131, aroK, shikimate kinase; Reviewed	NA|360aa|down_1|NC_017515.1_1887578_1888658_+	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|281aa|down_2|NC_017515.1_1889954_1890797_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|155aa|down_3|NC_017515.1_1890826_1891291_+	COG1327, COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]	NA|370aa|down_4|NC_017515.1_1891323_1892433_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|474aa|down_5|NC_017515.1_1892627_1894049_+	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	NA|414aa|down_6|NC_017515.1_1894216_1895458_+	pfam02397, Bac_transf, Bacterial sugar transferase	NA|392aa|down_7|NC_017515.1_1895590_1896766_+	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|637aa|down_8|NC_017515.1_1896813_1898724_+	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|431aa|down_9|NC_017515.1_1898779_1900072_+	COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
GCF_000191505.1_ASM19150v1	NC_017515	Neisseria meningitidis M04-240196, complete sequence	5	1928414-1928582	5	CRISPRCasFinder	no		DinG,csa3,DEDDh,c2c4_V-U1,cas3	Orphan	CCGTCATTCCCGCGCAGGCGGGAATC	26	1	1	1928440-1928487	NC_017515.1_202575-202622	I-E	2	2	Orphan	DinG,csa3,DEDDh,c2c4_V-U1,cas3	NA,NA|183aa|down_4|NC_017515.1_1938002_1938551_+,NA|86aa|down_9|NC_017515.1_1945244_1945502_+	NA|432aa|up_9|NC_017515.1_1916917_1918213_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|626aa|up_8|NC_017515.1_1918275_1920153_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|364aa|up_7|NC_017515.1_1920422_1921514_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|559aa|up_6|NC_017515.1_1921627_1923304_-	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|144aa|up_5|NC_017515.1_1923478_1923910_+	COG2510, COG2510, Predicted membrane protein [Function unknown]	NA|232aa|up_4|NC_017515.1_1924154_1924850_-	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family	NA|167aa|up_3|NC_017515.1_1924865_1925366_-	TIGR02296, HpaC, 4-hydroxyphenylacetate 3-monooxygenase, reductase component	NA|147aa|up_2|NC_017515.1_1925480_1925921_-	TIGR02337, Homoprotocatechuate_degradative_operon_repressor	NA|170aa|up_1|NC_017515.1_1926263_1926773_-	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|360aa|up_0|NC_017515.1_1927137_1928217_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|1027aa|down_0|NC_017515.1_1929170_1932251_+	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]	NA|378aa|down_1|NC_017515.1_1934581_1935715_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|130aa|down_2|NC_017515.1_1936458_1936848_+	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination,    and repair]	NA|188aa|down_3|NC_017515.1_1937436_1938000_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|183aa|down_4|NC_017515.1_1938002_1938551_+	NA	NA|1072aa|down_5|NC_017515.1_1938557_1941773_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|300aa|down_6|NC_017515.1_1941999_1942899_-	cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain	NA|193aa|down_7|NC_017515.1_1943137_1943716_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|347aa|down_8|NC_017515.1_1944087_1945128_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|86aa|down_9|NC_017515.1_1945244_1945502_+	NA
GCF_000191505.1_ASM19150v1	NC_017515	Neisseria meningitidis M04-240196, complete sequence	6	1928818-1928923	6	CRISPRCasFinder	no		DinG,csa3,DEDDh,c2c4_V-U1,cas3	Orphan	CCGTCATTCCCGCGCAGGCGGGAATC	26	0	0	NA	NA	I-E	1	1	Orphan	DinG,csa3,DEDDh,c2c4_V-U1,cas3	NA,NA|183aa|down_4|NC_017515.1_1938002_1938551_+,NA|86aa|down_9|NC_017515.1_1945244_1945502_+	NA|432aa|up_9|NC_017515.1_1916917_1918213_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|626aa|up_8|NC_017515.1_1918275_1920153_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|364aa|up_7|NC_017515.1_1920422_1921514_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|559aa|up_6|NC_017515.1_1921627_1923304_-	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|144aa|up_5|NC_017515.1_1923478_1923910_+	COG2510, COG2510, Predicted membrane protein [Function unknown]	NA|232aa|up_4|NC_017515.1_1924154_1924850_-	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family	NA|167aa|up_3|NC_017515.1_1924865_1925366_-	TIGR02296, HpaC, 4-hydroxyphenylacetate 3-monooxygenase, reductase component	NA|147aa|up_2|NC_017515.1_1925480_1925921_-	TIGR02337, Homoprotocatechuate_degradative_operon_repressor	NA|170aa|up_1|NC_017515.1_1926263_1926773_-	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|360aa|up_0|NC_017515.1_1927137_1928217_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|1027aa|down_0|NC_017515.1_1929170_1932251_+	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]	NA|378aa|down_1|NC_017515.1_1934581_1935715_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|130aa|down_2|NC_017515.1_1936458_1936848_+	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination,    and repair]	NA|188aa|down_3|NC_017515.1_1937436_1938000_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|183aa|down_4|NC_017515.1_1938002_1938551_+	NA	NA|1072aa|down_5|NC_017515.1_1938557_1941773_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|300aa|down_6|NC_017515.1_1941999_1942899_-	cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain	NA|193aa|down_7|NC_017515.1_1943137_1943716_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|347aa|down_8|NC_017515.1_1944087_1945128_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|86aa|down_9|NC_017515.1_1945244_1945502_+	NA
GCF_000191505.1_ASM19150v1	NC_017515	Neisseria meningitidis M04-240196, complete sequence	7	2009340-2009444	7	CRISPRCasFinder	no		DinG,csa3,DEDDh,c2c4_V-U1,cas3	Orphan	AACGGACTGGATTCCCGCCTGCGCGGGAATGAC	33	1	13	2009373-2009411|2009373-2009411|2009373-2009411|2009373-2009411|2009373-2009411|2009373-2009411|2009373-2009411|2009373-2009411|2009373-2009411|2009373-2009411|2009373-2009411|2009373-2009411|2009373-2009411	NC_017515.1_16030-15992|NC_017515.1_484257-484295|NC_017515.1_718934-718972|NC_017515.1_719674-719712|NC_017515.1_719926-719964|NC_017515.1_720149-720187|NC_017515.1_720245-720283|NC_017515.1_720843-720881|NC_017515.1_773605-773567|NC_017515.1_1578696-1578658|NC_017515.1_1578978-1578940|NC_017515.1_55256-55294|NC_017515.1_1932744-1932782	I-E	1	1	Orphan	DinG,csa3,DEDDh,c2c4_V-U1,cas3	NA,NA	NA|321aa|up_9|NC_017515.1_1995935_1996898_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|124aa|up_8|NC_017515.1_1996944_1997316_+	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|309aa|up_7|NC_017515.1_1997341_1998268_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|622aa|up_6|NC_017515.1_1998405_2000271_+	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA	NA|522aa|up_5|NC_017515.1_2000370_2001936_+	PRK00074, guaA, GMP synthase; Reviewed	NA|249aa|up_4|NC_017515.1_2001997_2002744_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|164aa|up_3|NC_017515.1_2003472_2003964_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|336aa|up_2|NC_017515.1_2004613_2005621_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|265aa|up_1|NC_017515.1_2006569_2007364_-	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|242aa|up_0|NC_017515.1_2007572_2008298_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|281aa|down_0|NC_017515.1_2009487_2010330_-	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|311aa|down_1|NC_017515.1_2011416_2012349_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|134aa|down_2|NC_017515.1_2012360_2012762_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|688aa|down_3|NC_017515.1_2012778_2014842_-	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|137aa|down_4|NC_017515.1_2014862_2015273_-	COG3171, COG3171, Uncharacterized protein conserved in bacteria [Function unknown]	NA|302aa|down_5|NC_017515.1_2015349_2016255_-	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|141aa|down_6|NC_017515.1_2016528_2016951_-	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|466aa|down_7|NC_017515.1_2016961_2018359_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|292aa|down_8|NC_017515.1_2018396_2019272_-	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|516aa|down_9|NC_017515.1_2019296_2020844_-	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated
GCF_000191505.1_ASM19150v1	NC_017515	Neisseria meningitidis M04-240196, complete sequence	8	2046326-2046409	8	CRISPRCasFinder	no		DinG,csa3,DEDDh,c2c4_V-U1,cas3	Orphan	CCGTCATTCCCGCGAAAGCGGGAATCTAG	29	1	6	2046355-2046380|2046355-2046380|2046355-2046380|2046355-2046380|2046355-2046380|2046355-2046380	NC_017515.1_1388021-1387996|NC_017515.1_1388774-1388749|NC_017515.1_1561805-1561830|NC_017515.1_856905-856930|NC_017515.1_1561135-1561160|NC_017515.1_2137952-2137977	I-E	1	1	Orphan	DinG,csa3,DEDDh,c2c4_V-U1,cas3	NA|59aa|up_3|NC_017515.1_2043728_2043905_+,NA|130aa|up_2|NC_017515.1_2043905_2044295_+,NA|67aa|up_1|NC_017515.1_2044303_2044504_+,NA	NA|276aa|up_9|NC_017515.1_2038651_2039479_-	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane]	NA|93aa|up_8|NC_017515.1_2039475_2039754_-	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only]	NA|197aa|up_7|NC_017515.1_2039810_2040401_-	COG2854, Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|165aa|up_6|NC_017515.1_2040437_2040932_-	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|259aa|up_5|NC_017515.1_2040982_2041759_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|267aa|up_4|NC_017515.1_2041807_2042608_-	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|59aa|up_3|NC_017515.1_2043728_2043905_+	NA	NA|130aa|up_2|NC_017515.1_2043905_2044295_+	NA	NA|67aa|up_1|NC_017515.1_2044303_2044504_+	NA	NA|481aa|up_0|NC_017515.1_2044538_2045981_+	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like	NA|594aa|down_0|NC_017515.1_2047063_2048845_+	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|506aa|down_1|NC_017515.1_2048903_2050421_-	pfam04575, DUF560, Protein of unknown function (DUF560)	NA|545aa|down_2|NC_017515.1_2051116_2052751_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|97aa|down_3|NC_017515.1_2052843_2053134_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|218aa|down_4|NC_017515.1_2053362_2054016_+	COG3676, COG3676, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|512aa|down_5|NC_017515.1_2054228_2055764_+	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain	NA|31aa|down_6|NC_017515.1_2055760_2055853_+	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit	NA|407aa|down_7|NC_017515.1_2055912_2057133_-	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|57aa|down_8|NC_017515.1_2057143_2057314_-	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site	NA|108aa|down_9|NC_017515.1_2057384_2057708_+	PRK00446, cyaY, frataxin-like protein; Provisional
GCF_000191505.1_ASM19150v1	NC_017515	Neisseria meningitidis M04-240196, complete sequence	9	2226990-2227070	9	CRISPRCasFinder	no		DinG,csa3,DEDDh,c2c4_V-U1,cas3	Orphan	TCATTCCCGCAAAAGCGGGAATCTAG	26	0	0	NA	NA	I-E	1	1	Orphan	DinG,csa3,DEDDh,c2c4_V-U1,cas3	NA|125aa|up_9|NC_017515.1_2212082_2212457_+,NA|72aa|up_4|NC_017515.1_2217178_2217394_+,NA|103aa|down_4|NC_017515.1_2233102_2233411_+,NA|147aa|down_9|NC_017515.1_2236140_2236581_+	NA|125aa|up_9|NC_017515.1_2212082_2212457_+	NA	NA|329aa|up_8|NC_017515.1_2213413_2214400_-	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|267aa|up_7|NC_017515.1_2214439_2215240_-	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|448aa|up_6|NC_017515.1_2215552_2216896_+	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|72aa|up_5|NC_017515.1_2216970_2217186_+	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|72aa|up_4|NC_017515.1_2217178_2217394_+	NA	NA|428aa|up_3|NC_017515.1_2217468_2218752_-	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|410aa|up_2|NC_017515.1_2218863_2220093_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|616aa|up_1|NC_017515.1_2220622_2222470_+	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|1390aa|up_0|NC_017515.1_2222524_2226694_+	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|486aa|down_0|NC_017515.1_2227788_2229246_+	TIGR00924, putative_Di/Tri_peptide_transporter, amino acid/peptide transporter (Peptide:H+ symporter), bacterial	NA|368aa|down_1|NC_017515.1_2230138_2231242_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|298aa|down_2|NC_017515.1_2231344_2232238_-	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|150aa|down_3|NC_017515.1_2232579_2233029_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|103aa|down_4|NC_017515.1_2233102_2233411_+	NA	NA|281aa|down_5|NC_017515.1_2233527_2234370_+	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown]	NA|249aa|down_6|NC_017515.1_2234359_2235106_+	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|196aa|down_7|NC_017515.1_2235127_2235715_+	PRK12532, PRK12532, RNA polymerase sigma factor; Provisional	NA|60aa|down_8|NC_017515.1_2235720_2235900_+	pfam13490, zf-HC2, Putative zinc-finger	NA|147aa|down_9|NC_017515.1_2236140_2236581_+	NA
GCF_000191505.1_ASM19150v1	NC_017515	Neisseria meningitidis M04-240196, complete sequence	10	2233282-2233387	10	CRISPRCasFinder	no		DinG,csa3,DEDDh,c2c4_V-U1,cas3	Orphan	CGAAGGCAAATGCGGCGAGGGCAAATGCGGT	31	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,c2c4_V-U1,cas3	NA|72aa|up_8|NC_017515.1_2217178_2217394_+,NA|147aa|down_4|NC_017515.1_2236140_2236581_+	NA|72aa|up_9|NC_017515.1_2216970_2217186_+	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|72aa|up_8|NC_017515.1_2217178_2217394_+	NA	NA|428aa|up_7|NC_017515.1_2217468_2218752_-	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|410aa|up_6|NC_017515.1_2218863_2220093_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|616aa|up_5|NC_017515.1_2220622_2222470_+	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|1390aa|up_4|NC_017515.1_2222524_2226694_+	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|486aa|up_3|NC_017515.1_2227788_2229246_+	TIGR00924, putative_Di/Tri_peptide_transporter, amino acid/peptide transporter (Peptide:H+ symporter), bacterial	NA|368aa|up_2|NC_017515.1_2230138_2231242_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|298aa|up_1|NC_017515.1_2231344_2232238_-	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|150aa|up_0|NC_017515.1_2232579_2233029_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|281aa|down_0|NC_017515.1_2233527_2234370_+	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown]	NA|249aa|down_1|NC_017515.1_2234359_2235106_+	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|196aa|down_2|NC_017515.1_2235127_2235715_+	PRK12532, PRK12532, RNA polymerase sigma factor; Provisional	NA|60aa|down_3|NC_017515.1_2235720_2235900_+	pfam13490, zf-HC2, Putative zinc-finger	NA|147aa|down_4|NC_017515.1_2236140_2236581_+	NA	NA|322aa|down_5|NC_017515.1_2237054_2238020_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|201aa|down_6|NC_017515.1_2238567_2239170_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|424aa|down_7|NC_017515.1_2239203_2240475_-	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|106aa|down_8|NC_017515.1_2240632_2240950_+	pfam14131, DUF4298, Domain of unknown function (DUF4298)	NA|204aa|down_9|NC_017515.1_2241001_2241613_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]
