The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_015508	Agrobacterium sp. H13-3 chromosome linear, complete sequence	2148289	8582	53632	2148289	plate,transposase	Lactococcus_phage(16.67%)	38	NA	NA
WP_013760959.1|8582_10103_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_013760960.1|10092_10887_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	34.9	6.3e-32
WP_085941278.1|10901_11252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013760962.1|11712_12735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013760963.1|13126_14062_-	HEPN domain-containing protein	NA	NA	NA	NA	NA
WP_013760964.1|14531_15605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013760965.1|15949_17614_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_013760966.1|17610_17919_-	mobilization protein	NA	NA	NA	NA	NA
WP_013760967.1|18104_19019_-	HEPN domain-containing protein	NA	NA	NA	NA	NA
WP_148257329.1|19695_20802_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	34.5	1.3e-11
WP_013760970.1|21106_24871_+	Ti-type conjugative transfer relaxase TraA	NA	NA	NA	NA	NA
WP_111788556.1|25121_25652_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	37.8	3.1e-06
WP_038495607.1|25881_27063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046205630.1|27205_29191_+	DKNYY domain-containing protein	NA	NA	NA	NA	NA
WP_013760974.1|29231_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013760976.1|30429_30708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013760977.1|31137_31587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013760978.1|31589_32138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041694577.1|32134_33352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013760980.1|33353_33731_-	PAAR domain-containing protein	NA	I1TQN1	Pseudomonas_phage	35.7	5.7e-07
WP_013760981.1|33747_34281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019566792.1|34287_35253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019566791.1|35249_35714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013760984.1|35722_37876_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	28.0	8.3e-34
WP_013760985.1|37889_38390_-	type VI secretion system amidase effector protein Tae4	NA	NA	NA	NA	NA
WP_013760986.1|38401_38791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004431488.1|38899_39376_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_013760987.1|39433_42103_-	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	30.0	3.5e-90
WP_013760988.1|42323_43379_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_013760989.1|43444_43954_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_004431481.1|44050_45532_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_013760990.1|45587_46982_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_013760991.1|46978_47800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013760992.1|47792_48302_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_013760993.1|48294_50076_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_013760994.1|50085_51090_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_013760995.1|51096_52302_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_013760996.1|52291_53632_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 2
NC_015508	Agrobacterium sp. H13-3 chromosome linear, complete sequence	2148289	252402	260813	2148289		Enterobacteria_phage(50.0%)	7	NA	NA
WP_013761158.1|252402_252972_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	43.2	2.6e-35
WP_041694589.1|252974_254030_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.8	3.7e-96
WP_013761160.1|254035_254929_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.8	9.0e-35
WP_013761161.1|254925_255792_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	58.0	4.9e-94
WP_041694590.1|255919_256765_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_013761163.1|256805_257729_-	NAD-dependent epimerase/dehydratase family protein	NA	L7RCI0	Acanthamoeba_polyphaga_moumouvirus	27.2	3.0e-25
WP_013761164.1|257744_260813_-	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	33.3	2.2e-08
>prophage 1
NC_015183	Agrobacterium sp. H13-3 chromosome circular, complete sequence	2823930	892159	898907	2823930	tail,capsid,portal,head,protease	Geobacillus_phage(33.33%)	9	NA	NA
WP_013635734.1|892159_893326_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	39.0	4.9e-65
WP_003512100.1|893513_893834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013635735.1|893875_894466_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	43.4	1.6e-27
WP_041694343.1|894503_895772_+|capsid	phage major capsid protein	capsid	Q3HQT0	Burkholderia_phage	42.9	3.8e-79
WP_013635737.1|895884_896454_+|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
WP_013635738.1|896457_896793_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_013635739.1|896789_897185_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_013635740.1|897192_898392_-	MFS transporter	NA	NA	NA	NA	NA
WP_003512111.1|898499_898907_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
>prophage 2
NC_015183	Agrobacterium sp. H13-3 chromosome circular, complete sequence	2823930	1415720	1471380	2823930	tail,capsid,integrase,portal,head,tRNA,terminase	Rhizobium_phage(23.81%)	63	1411472:1411486	1447055:1447069
1411472:1411486	attL	GGCGATCAGGAGCGG	NA	NA	NA	NA
WP_003515246.1|1415720_1417271_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	39.3	9.9e-106
WP_013636095.1|1417375_1418401_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_013636096.1|1418393_1419068_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	41.7	2.5e-37
WP_013636097.1|1419205_1420378_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_025593441.1|1420454_1421543_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	50.0	9.3e-18
WP_013636098.1|1421862_1422201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013636100.1|1423009_1423237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003515255.1|1423252_1423516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636101.1|1423653_1424364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003515257.1|1424512_1426027_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_003515258.1|1426111_1426372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013636103.1|1426465_1429258_-	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.2	5.6e-75
WP_003515260.1|1429475_1430105_+	MarC family protein	NA	NA	NA	NA	NA
WP_013636104.1|1430228_1431377_+	HPP family protein	NA	NA	NA	NA	NA
WP_013636105.1|1431443_1432019_-	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	75.0	2.5e-46
WP_041694398.1|1432284_1435206_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.3	0.0e+00
WP_013636107.1|1435262_1436063_+	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_041694400.1|1436068_1437085_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_013636109.1|1437207_1438281_+|integrase	site-specific integrase	integrase	I6NSG1	Burkholderia_phage	53.3	8.4e-104
WP_148257312.1|1438367_1438547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041694404.1|1438551_1438851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636111.1|1439033_1439288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636112.1|1439354_1439606_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_041694406.1|1439619_1440063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013636113.1|1440190_1441231_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A141GEZ3	Brucella_phage	51.0	1.1e-92
WP_041694408.1|1441905_1442382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013636116.1|1442384_1443047_+	SOS response-associated peptidase	NA	A0A291AUP1	Sinorhizobium_phage	57.0	2.8e-73
WP_013636117.1|1443056_1443470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013636118.1|1443624_1443840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013636119.1|1444083_1444320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013636120.1|1444868_1445213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019567289.1|1445330_1445564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636122.1|1445563_1446487_-	peptidoglycan-binding protein	NA	A0A0A1I5L5	Burkholderia_phage	35.8	1.5e-05
WP_013636123.1|1447321_1447720_-	hypothetical protein	NA	NA	NA	NA	NA
1447055:1447069	attR	CCGCTCCTGATCGCC	NA	NA	NA	NA
WP_013636124.1|1447719_1449531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636125.1|1449523_1449739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636127.1|1452671_1453100_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_013636128.1|1453099_1453765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148257317.1|1453965_1454517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041694411.1|1454513_1454747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041694412.1|1454747_1455392_-	hypothetical protein	NA	A0A291AUM9	Sinorhizobium_phage	28.9	6.8e-08
WP_013636131.1|1455478_1455973_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_041694413.1|1456029_1458399_-|tail	phage tail length tape measure family protein	tail	A0A2D2W291	Sinorhizobium_phage	33.4	5.3e-50
WP_041694415.1|1458446_1458707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083807283.1|1458707_1458911_-|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_013636134.1|1458907_1459267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636135.1|1459268_1459700_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_013636136.1|1459734_1460145_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_013636137.1|1460144_1460639_-	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_013636138.1|1460635_1460992_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_013636139.1|1461117_1461465_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_013636140.1|1461466_1461808_-	hypothetical protein	NA	A0A0H4INV0	Stenotrophomonas_phage	51.3	5.7e-06
WP_013636141.1|1461785_1462052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636142.1|1462099_1463302_-|capsid	phage major capsid protein	capsid	Q6JIM7	Burkholderia_virus	58.0	2.0e-114
WP_013636143.1|1463313_1464432_-	S49 family peptidase	NA	K4HZZ6	Acidithiobacillus_phage	34.3	1.6e-33
WP_013636144.1|1464441_1465671_-|portal	phage portal protein	portal	A0A0U4IIV7	Pseudomonas_phage	38.0	6.5e-68
WP_013636145.1|1465695_1467339_-|terminase	terminase large subunit	terminase	B4UTP0	Rhizobium_phage	75.4	3.9e-225
WP_013636146.1|1467351_1467807_-	hypothetical protein	NA	B4UTN9	Rhizobium_phage	70.2	4.6e-51
WP_041694418.1|1467927_1468236_-	HNH endonuclease	NA	B4UTZ8	Rhizobium_phage	62.9	2.2e-20
WP_168165003.1|1468228_1468534_-	HNH endonuclease	NA	A0A068F8W5	Mycobacterium_phage	42.0	4.5e-10
WP_013636148.1|1469499_1470450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041694420.1|1470446_1470719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636150.1|1470906_1471380_-	VRR-NUC domain-containing protein	NA	B4UTZ1	Rhizobium_phage	70.5	1.1e-47
>prophage 3
NC_015183	Agrobacterium sp. H13-3 chromosome circular, complete sequence	2823930	1622867	1631016	2823930	tRNA	uncultured_Mediterranean_phage(66.67%)	8	NA	NA
WP_013636256.1|1622867_1624400_+	AMP-binding protein	NA	A0A2K9KZV5	Tupanvirus	21.6	4.4e-21
WP_041694447.1|1624383_1625661_+	type III PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_013636258.1|1625760_1626933_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	44.4	2.2e-44
WP_003515541.1|1626969_1628100_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	53.0	1.0e-104
WP_041694449.1|1628099_1629182_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003515547.1|1629376_1629886_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	1.1e-45
WP_003515549.1|1629922_1630492_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	53.2	1.4e-44
WP_003515552.1|1630521_1631016_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	39.0	2.2e-27
>prophage 4
NC_015183	Agrobacterium sp. H13-3 chromosome circular, complete sequence	2823930	1647118	1655555	2823930	tRNA	uncultured_Mediterranean_phage(75.0%)	9	NA	NA
WP_041694452.1|1647118_1648684_-	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	I3PV24	Clostridium_phage	30.6	1.4e-11
WP_029658770.1|1649029_1649671_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1J0MC37	Streptomyces_phage	36.0	4.5e-12
WP_013636276.1|1649679_1650450_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	29.9	1.1e-23
WP_013636277.1|1650662_1651946_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.3	2.8e-98
WP_003515595.1|1652050_1652854_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	41.2	8.9e-42
WP_013636278.1|1652850_1653579_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_003515599.1|1653633_1653840_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	69.8	2.1e-08
WP_041694454.1|1653970_1654717_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.6	2.3e-39
WP_013636280.1|1654706_1655555_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.7	3.8e-35
>prophage 5
NC_015183	Agrobacterium sp. H13-3 chromosome circular, complete sequence	2823930	1741586	1769039	2823930	tail,capsid,head,holin,terminase	Morganella_phage(20.0%)	33	NA	NA
WP_041694542.1|1741586_1742312_-|holin	phosphatidylcholine synthase	holin	NA	NA	NA	NA
WP_013636339.1|1742521_1743730_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_013636340.1|1743713_1744652_-	AEC family transporter	NA	NA	NA	NA	NA
WP_025593718.1|1744687_1745434_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA	NA
WP_013636341.1|1746161_1746743_+	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_168165005.1|1746979_1747267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013636342.1|1747327_1747780_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_013636343.1|1747791_1748535_-	glycosyltransferase family 25 protein	NA	NA	NA	NA	NA
WP_013636344.1|1748678_1749935_-	DUF882 domain-containing protein	NA	NA	NA	NA	NA
WP_003515949.1|1750092_1750533_-	VOC family protein	NA	NA	NA	NA	NA
WP_013636345.1|1750723_1751302_+	cold shock domain-containing protein	NA	A0A1W6JNX5	Morganella_phage	42.4	3.0e-07
WP_013636346.1|1751301_1751787_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003515953.1|1751846_1752095_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003515956.1|1752306_1752576_+	DUF982 domain-containing protein	NA	NA	NA	NA	NA
WP_013636347.1|1753158_1754301_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_013636348.1|1754491_1755064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041694465.1|1755070_1755937_-	DUF4747 family protein	NA	NA	NA	NA	NA
WP_013636350.1|1756104_1756590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636351.1|1756694_1757237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041694466.1|1757333_1757804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041694467.1|1758005_1758512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636354.1|1758895_1759327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636355.1|1759550_1762265_-	D-alanyl-D-alanine carboxypeptidase family protein	NA	A0A291AUM6	Sinorhizobium_phage	39.8	3.2e-59
WP_013636356.1|1762276_1763896_-|terminase	terminase	terminase	A0A023J2V1	Lactococcus_phage	22.2	2.6e-16
WP_013636357.1|1763896_1764289_-|terminase	P27 family phage terminase small subunit	terminase	NA	NA	NA	NA
WP_041694468.1|1764285_1764603_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_013636359.1|1764599_1765052_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_013636360.1|1765027_1765453_-	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_013636361.1|1765442_1765745_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_013636362.1|1765741_1766512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041694469.1|1766508_1766850_-	HNH endonuclease	NA	Q38456	Bacillus_phage	45.8	1.9e-17
WP_013636364.1|1766846_1767464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013636365.1|1767467_1769039_-|capsid	phage major capsid protein	capsid	Q6DMU0	Streptococcus_phage	31.7	1.4e-35
