assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000194115.1_ASM19411v1	NC_017470	Lactobacillus amylovorus GRL1118, complete sequence	1	540951-541134	1	PILER-CR	no		Cas14u_CAS-V,cas14j,cas2,cas3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,csa3	Orphan	CACGCGTGGGTTCAAATCCCACAT	24	0	0	NA	NA	NA	2	2	Orphan	Cas14u_CAS-V,cas14j,cas2,cas3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,csa3	NA|83aa|up_5|NC_017470.1_535640_535889_+,NA|116aa|up_3|NC_017470.1_536790_537138_+,NA|136aa|down_7|NC_017470.1_549339_549747_+	NA|103aa|up_9|NC_017470.1_531257_531566_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|480aa|up_8|NC_017470.1_531565_533005_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|477aa|up_7|NC_017470.1_533009_534440_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|307aa|up_6|NC_017470.1_534465_535386_+	PRK13055, PRK13055, putative lipid kinase; Reviewed	NA|83aa|up_5|NC_017470.1_535640_535889_+	NA	NA|237aa|up_4|NC_017470.1_535939_536650_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|116aa|up_3|NC_017470.1_536790_537138_+	NA	NA|459aa|up_2|NC_017470.1_537189_538566_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|449aa|up_1|NC_017470.1_538935_540282_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|167aa|up_0|NC_017470.1_540291_540792_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|500aa|down_0|NC_017470.1_541291_542791_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|591aa|down_1|NC_017470.1_543435_545208_+	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|159aa|down_2|NC_017470.1_545397_545874_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|163aa|down_3|NC_017470.1_545963_546452_+	pfam13127, DUF3955, Protein of unknown function (DUF3955)	NA|272aa|down_4|NC_017470.1_546470_547286_-	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|271aa|down_5|NC_017470.1_547260_548073_-	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|304aa|down_6|NC_017470.1_548083_548995_-	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|136aa|down_7|NC_017470.1_549339_549747_+	NA	NA|795aa|down_8|NC_017470.1_549743_552128_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|279aa|down_9|NC_017470.1_552295_553132_+	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)
GCF_000194115.1_ASM19411v1	NC_017470	Lactobacillus amylovorus GRL1118, complete sequence	2	1001645-1002709	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	Cas14u_CAS-V,cas14j,cas2,cas3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,csa3	Type I-E	GTGTTCTCCACGTAAGTGGAGGTGATCC,GTGTTCTCCACGTAAGTGGAGGTGATCC,GTGTTCTCCACGTAAGTGGAGGTGATCC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	16,17,17	17	TypeI-E	Cas14u_CAS-V,cas14j,cas2,cas3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,csa3	NA|118aa|up_6|NC_017470.1_994119_994473_+,NA|146aa|up_0|NC_017470.1_1001135_1001573_+,NA	NA|274aa|up_9|NC_017470.1_991208_992030_+	PRK07105, PRK07105, pyridoxamine kinase; Validated	NA|186aa|up_8|NC_017470.1_992039_992597_+	COG4720, COG4720, Predicted membrane protein [Function unknown]	NA|402aa|up_7|NC_017470.1_992672_993878_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|118aa|up_6|NC_017470.1_994119_994473_+	NA	NA|75aa|up_5|NC_017470.1_995094_995319_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|482aa|up_4|NC_017470.1_995506_996952_+	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|516aa|up_3|NC_017470.1_997392_998940_+	cd01126, TraG_VirD4, The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion	NA|371aa|up_2|NC_017470.1_999015_1000128_-	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|298aa|up_1|NC_017470.1_1000194_1001088_+	smart00563, PlsC, Phosphate acyltransferases	NA|146aa|up_0|NC_017470.1_1001135_1001573_+	NA	cas3|911aa|down_0|NC_017470.1_1002744_1005477_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|588aa|down_1|NC_017470.1_1005473_1007237_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|195aa|down_2|NC_017470.1_1007246_1007831_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|363aa|down_3|NC_017470.1_1007838_1008927_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|down_4|NC_017470.1_1008907_1009603_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|down_5|NC_017470.1_1009615_1010266_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|315aa|down_6|NC_017470.1_1010268_1011213_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|299aa|down_7|NC_017470.1_1011216_1012113_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|323aa|down_8|NC_017470.1_1013601_1014570_+	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|465aa|down_9|NC_017470.1_1014582_1015977_+	PRK11387, PRK11387, S-methylmethionine permease
GCF_000194115.1_ASM19411v1	NC_017470	Lactobacillus amylovorus GRL1118, complete sequence	3	1012143-1013268	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	Cas14u_CAS-V,cas14j,cas2,cas3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,csa3	Type I-E	GTGTTCTCCACGTATGTGGAGGTGATCC,GTGTTCTCCACGTATGTGGAGGTGATCC,GTGTTCTCCACGTATGTGGAGGTGATCC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	17,18,18	18	TypeI-E	Cas14u_CAS-V,cas14j,cas2,cas3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,csa3	NA|146aa|up_8|NC_017470.1_1001135_1001573_+,NA|177aa|down_4|NC_017470.1_1019434_1019965_+,NA|348aa|down_5|NC_017470.1_1020058_1021102_+,NA|215aa|down_7|NC_017470.1_1021715_1022360_+,NA|495aa|down_8|NC_017470.1_1022328_1023813_+	NA|298aa|up_9|NC_017470.1_1000194_1001088_+	smart00563, PlsC, Phosphate acyltransferases	NA|146aa|up_8|NC_017470.1_1001135_1001573_+	NA	cas3|911aa|up_7|NC_017470.1_1002744_1005477_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|588aa|up_6|NC_017470.1_1005473_1007237_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|195aa|up_5|NC_017470.1_1007246_1007831_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|363aa|up_4|NC_017470.1_1007838_1008927_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|up_3|NC_017470.1_1008907_1009603_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NC_017470.1_1009615_1010266_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|315aa|up_1|NC_017470.1_1010268_1011213_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|299aa|up_0|NC_017470.1_1011216_1012113_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|323aa|down_0|NC_017470.1_1013601_1014570_+	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|465aa|down_1|NC_017470.1_1014582_1015977_+	PRK11387, PRK11387, S-methylmethionine permease	NA|311aa|down_2|NC_017470.1_1017667_1018600_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|215aa|down_3|NC_017470.1_1018733_1019378_+	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN	NA|177aa|down_4|NC_017470.1_1019434_1019965_+	NA	NA|348aa|down_5|NC_017470.1_1020058_1021102_+	NA	NA|192aa|down_6|NC_017470.1_1021106_1021682_+	pfam13671, AAA_33, AAA domain	NA|215aa|down_7|NC_017470.1_1021715_1022360_+	NA	NA|495aa|down_8|NC_017470.1_1022328_1023813_+	NA	NA|202aa|down_9|NC_017470.1_1026145_1026751_+	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)
GCF_000194115.1_ASM19411v1	NC_017472	Lactobacillus amylovorus GRL1118 plasmid p2, complete sequence	1	40785-41023	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no			Orphan	GTTTTCGGTGGTTGTCATTTCAAGCAGGTAAATACC,GTTTTCGGTGGTTGTCATTTCAAGCAGGTAAATACC,GTTTTCGGTGGTTGTCATTTCAAGCAGGTAAATACCTAAA	36,36,40	0	0	NA	NA	NA:NA:NA	3,3,2	3	Orphan	Cas14u_CAS-V,cas14j,cas2,cas3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,csa3	NA|103aa|up_8|NC_017472.1_32288_32597_-,NA|62aa|up_6|NC_017472.1_34766_34952_-,NA|48aa|up_5|NC_017472.1_35120_35264_-,NA|74aa|up_4|NC_017472.1_35377_35599_-,NA|47aa|up_3|NC_017472.1_36562_36703_+,NA|253aa|up_2|NC_017472.1_37165_37924_-,NA|618aa|up_1|NC_017472.1_37907_39761_-,NA|227aa|up_0|NC_017472.1_39970_40651_+,NA|108aa|down_0|NC_017472.1_41549_41873_+,NA|81aa|down_1|NC_017472.1_42910_43153_+	NA|533aa|up_9|NC_017472.1_30659_32258_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|103aa|up_8|NC_017472.1_32288_32597_-	NA	NA|285aa|up_7|NC_017472.1_33897_34752_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|62aa|up_6|NC_017472.1_34766_34952_-	NA	NA|48aa|up_5|NC_017472.1_35120_35264_-	NA	NA|74aa|up_4|NC_017472.1_35377_35599_-	NA	NA|47aa|up_3|NC_017472.1_36562_36703_+	NA	NA|253aa|up_2|NC_017472.1_37165_37924_-	NA	NA|618aa|up_1|NC_017472.1_37907_39761_-	NA	NA|227aa|up_0|NC_017472.1_39970_40651_+	NA	NA|108aa|down_0|NC_017472.1_41549_41873_+	NA	NA|81aa|down_1|NC_017472.1_42910_43153_+	NA	NA|949aa|down_2|NC_017472.1_43268_46115_-	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms]	NA|196aa|down_3|NC_017472.1_46289_46877_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|208aa|down_4|NC_017472.1_50043_50667_+	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|242aa|down_5|NC_017472.1_50883_51609_+	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase	NA|99aa|down_6|NC_017472.1_52136_52433_+	cd11535, NTP-PPase_SsMazG, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|502aa|down_7|NC_017472.1_52711_54217_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|643aa|down_8|NC_017472.1_57155_59084_+	cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins	NA|317aa|down_9|NC_017472.1_59139_60090_+	pfam03217, SLAP, SLAP domain
