The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017532	Pseudomonas stutzeri DSM 4166, complete sequence	4689946	57089	68401	4689946		Bacillus_phage(100.0%)	7	NA	NA
WP_011911301.1|57089_57479_-	response regulator	NA	W8CYM9	Bacillus_phage	40.3	3.4e-15
WP_014595340.1|57475_60352_-	CHASE3 domain-containing protein	NA	W8CYF6	Bacillus_phage	33.5	4.5e-27
WP_014595341.1|60479_62120_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	35.8	9.1e-17
WP_003282388.1|62112_62502_-	response regulator	NA	W8CYM9	Bacillus_phage	31.6	2.0e-07
WP_014595342.1|62498_64910_-	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	35.1	3.8e-27
WP_011911305.1|64986_65373_-	response regulator	NA	W8CYM9	Bacillus_phage	35.0	1.2e-12
WP_014595343.1|65422_68401_-	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	34.3	2.1e-27
>prophage 2
NC_017532	Pseudomonas stutzeri DSM 4166, complete sequence	4689946	1660227	1671584	4689946	tRNA,transposase	Streptomyces_phage(16.67%)	7	NA	NA
WP_013982337.1|1660227_1663749_+	DNA polymerase III subunit alpha	NA	A0A291AVA6	Streptomyces_phage	37.4	5.2e-203
WP_014596298.1|1663933_1664884_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_043942142.1|1665072_1666299_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	20.7	2.1e-05
WP_011912718.1|1666466_1668098_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.1	6.7e-153
WP_013982341.1|1668094_1668940_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	40.7	1.1e-50
WP_014596300.1|1668974_1670264_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	60.7	8.2e-138
WP_014595397.1|1670381_1671584_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	54.4	2.0e-109
>prophage 3
NC_017532	Pseudomonas stutzeri DSM 4166, complete sequence	4689946	2138743	2152522	4689946		uncultured_Caudovirales_phage(75.0%)	12	NA	NA
WP_014596608.1|2138743_2141275_+	pyrroloquinoline quinone biosynthesis protein PqqF	NA	A0A1V0SJA4	Klosneuvirus	29.0	3.5e-15
WP_014596609.1|2141532_2142720_+	porin	NA	NA	NA	NA	NA
WP_013982686.1|2143033_2144197_+	FIST C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_085987733.1|2144126_2146766_+	PAS-domain containing protein	NA	A0A2K9L5I4	Tupanvirus	28.6	2.0e-13
WP_014596611.1|2146805_2147810_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_014596612.1|2147894_2148878_-	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	75.2	7.6e-144
WP_014596613.1|2148874_2149207_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	73.4	7.7e-40
WP_014596614.1|2149203_2149506_-	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	58.0	1.2e-23
WP_014596615.1|2149505_2149865_-	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	63.3	6.8e-34
WP_014596616.1|2149864_2150257_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	70.5	6.5e-46
WP_014596617.1|2150485_2151754_+	MFS transporter	NA	NA	NA	NA	NA
WP_011913132.1|2151853_2152522_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	76.7	7.6e-87
>prophage 4
NC_017532	Pseudomonas stutzeri DSM 4166, complete sequence	4689946	2614279	2654712	4689946	transposase,protease	Burkholderia_virus(22.22%)	40	NA	NA
WP_014596893.1|2614279_2615242_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_004152114.1|2615228_2615717_-	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA	NA
WP_043942199.1|2615758_2615977_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_043942200.1|2618360_2618816_-	thioredoxin TrxC	NA	F2WLG3	Lausannevirus	35.9	1.8e-10
WP_014596898.1|2618796_2620677_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	41.3	8.6e-104
WP_014596899.1|2620704_2622135_-	cardiolipin synthase	NA	NA	NA	NA	NA
WP_014596900.1|2622152_2625002_-	heat shock survival AAA family ATPase ClpK	NA	K4FB40	Cronobacter_phage	41.5	5.3e-129
WP_014596901.1|2625098_2625668_-	small heat shock protein sHSP20	NA	NA	NA	NA	NA
WP_003116633.1|2626206_2626470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085987735.1|2626542_2627764_+|transposase	IS3-like element ISPst4 family transposase	transposase	Q8W6R2	Burkholderia_virus	75.8	3.4e-117
WP_014596906.1|2628679_2629669_+|transposase	IS5 family transposase	transposase	E5E3P6	Burkholderia_phage	53.8	4.9e-98
WP_014596907.1|2629909_2630608_-	conjugal transfer protein TraX	NA	NA	NA	NA	NA
WP_003116628.1|2630604_2631045_-	DedA family protein	NA	NA	NA	NA	NA
WP_003116627.1|2631046_2632165_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA	NA
WP_003116626.1|2632174_2632462_-	metal-sensing transcriptional repressor	NA	NA	NA	NA	NA
WP_124209411.1|2632563_2632905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003119946.1|2632961_2633687_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_003116624.1|2633698_2634364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010791789.1|2634416_2635388_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
WP_014596910.1|2635745_2637737_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_014596911.1|2637733_2638168_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_014596912.1|2638227_2639196_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA	NA
WP_014596913.1|2639167_2639509_+	TrbC/VIRB2 family protein	NA	NA	NA	NA	NA
WP_014596914.1|2639505_2639778_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA	NA
WP_014596915.1|2639788_2642218_+	conjugal transfer protein TrbE	NA	NA	NA	NA	NA
WP_014596916.1|2642214_2642949_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA	NA
WP_013791226.1|2642961_2643147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014596917.1|2643143_2644304_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA	NA
WP_014596918.1|2644316_2645024_+	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
WP_014596919.1|2645020_2646007_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA	NA
WP_014596920.1|2646009_2647275_+	TrbI/VirB10 family protein	NA	NA	NA	NA	NA
WP_013716013.1|2647271_2647505_+	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_043942203.1|2647598_2647877_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A0M3LQB1	Mannheimia_phage	45.7	1.5e-17
WP_003108490.1|2647894_2648182_+	HigA family addiction module antidote protein	NA	A0A0M3LPV0	Mannheimia_phage	48.1	1.1e-15
WP_014596922.1|2648490_2649687_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_014596923.1|2649686_2649938_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_085987735.1|2650152_2651375_-|transposase	IS3-like element ISPst4 family transposase	transposase	Q8W6R2	Burkholderia_virus	75.8	3.4e-117
WP_003282986.1|2652474_2652792_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_003282984.1|2652788_2653124_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_014595722.1|2653185_2654712_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	50.1	1.2e-119
>prophage 5
NC_017532	Pseudomonas stutzeri DSM 4166, complete sequence	4689946	3717155	3776834	4689946	transposase,integrase	Bacillus_phage(27.27%)	49	3722356:3722372	3782999:3783015
WP_014597600.1|3717155_3719597_+|integrase	site-specific integrase	integrase	A0A059XK29	uncultured_phage	26.5	1.7e-11
WP_011914403.1|3719759_3721019_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_085987738.1|3721973_3723124_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	66.7	1.3e-102
3722356:3722372	attL	CGAGGCTTCATCGACCA	NA	NA	NA	NA
WP_020307713.1|3724939_3725257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011914418.1|3725280_3728403_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_011914419.1|3728405_3730043_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_043942256.1|3730039_3731326_-	TolC family protein	NA	NA	NA	NA	NA
WP_169918116.1|3731962_3732385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014597607.1|3732399_3734592_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_014597608.1|3734592_3735282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003298494.1|3735278_3736082_+	cytochrome c3 family protein	NA	NA	NA	NA	NA
WP_003298493.1|3736093_3736429_+	DUF1622 domain-containing protein	NA	NA	NA	NA	NA
WP_003292133.1|3736662_3736992_-	DUF2790 domain-containing protein	NA	NA	NA	NA	NA
WP_148256282.1|3738009_3738339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011914423.1|3738534_3738828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003292136.1|3739432_3739888_+	DUF305 domain-containing protein	NA	W6GVI1	Samba_virus	39.4	1.2e-06
WP_014597611.1|3740090_3740903_-	cytochrome c	NA	NA	NA	NA	NA
WP_003292138.1|3740911_3742072_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_003298487.1|3742061_3742373_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014597614.1|3742385_3744167_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_003292141.1|3744812_3746576_-	protein-disulfide reductase DsbD	NA	NA	NA	NA	NA
WP_014597615.1|3746758_3747199_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_003292143.1|3747225_3747498_-	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	41.5	6.6e-05
WP_080558872.1|3747571_3749926_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	36.4	1.9e-84
WP_080505060.1|3749931_3750102_-	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_003292145.1|3750686_3751364_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.7	4.3e-29
WP_169918117.1|3751366_3752740_+	heavy metal sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	28.7	9.7e-12
WP_024162553.1|3752925_3753255_+	four-helix bundle copper-binding protein	NA	NA	NA	NA	NA
WP_085987739.1|3753474_3753774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085987738.1|3755027_3756178_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	66.7	1.3e-102
WP_043942259.1|3756280_3756778_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_011914454.1|3756864_3757755_-	cation transporter	NA	NA	NA	NA	NA
WP_019405735.1|3758276_3758594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014597623.1|3758834_3760208_-	heavy metal sensor histidine kinase	NA	W8CYF6	Bacillus_phage	24.1	1.1e-15
WP_013982153.1|3760204_3760879_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.1	1.6e-28
WP_014597624.1|3761196_3762516_-	OprD family porin	NA	NA	NA	NA	NA
WP_014597625.1|3762816_3764052_+	TolC family protein	NA	NA	NA	NA	NA
WP_014597626.1|3764093_3765401_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_014597627.1|3765420_3768585_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA	NA
WP_003282470.1|3768812_3769043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011914465.1|3769443_3770364_+	cation transporter	NA	NA	NA	NA	NA
WP_003089120.1|3770757_3771156_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003089115.1|3771230_3771581_+	mercury transporter MerT	NA	NA	NA	NA	NA
WP_003150552.1|3771593_3771869_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_003089113.1|3771876_3772089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003089110.1|3772101_3775095_-|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	47.6	7.5e-259
WP_003150546.1|3775098_3775509_-	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA	NA
WP_003089107.1|3775508_3775748_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003291594.1|3775940_3776834_-|integrase	integrase	integrase	NA	NA	NA	NA
3782999:3783015	attR	CGAGGCTTCATCGACCA	NA	NA	NA	NA
