The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_021830	Listeria monocytogenes J1816, complete sequence	2947460	11090	18015	2947460	integrase	Clostridium_phage(33.33%)	8	7291:7304	12476:12489
7291:7304	attL	CAAAATCAATAAAA	NA	NA	NA	NA
WP_003740555.1|11090_12164_-|integrase	site-specific integrase	integrase	A0A0A8WF08	Clostridium_phage	46.5	5.5e-87
WP_003724638.1|12166_12364_-	LysR family transcriptional regulator	NA	Q8SBM7	Clostridium_phage	46.3	1.5e-06
WP_003724637.1|12540_13020_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JDE4	uncultured_Caudovirales_phage	34.3	7.3e-07
12476:12489	attR	TTTTATTGATTTTG	NA	NA	NA	NA
WP_012681222.1|13218_14775_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
WP_003724635.1|14903_15308_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_003724634.1|15367_15676_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003727000.1|15688_16513_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	9.7e-68
WP_003724632.1|16524_18015_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.5	2.8e-113
>prophage 2
NC_021830	Listeria monocytogenes J1816, complete sequence	2947460	999025	1005552	2947460	tail	uncultured_Caudovirales_phage(33.33%)	10	NA	NA
WP_003724951.1|999025_999844_-|tail	phage tail family protein	tail	A0A2H4JAE4	uncultured_Caudovirales_phage	34.9	1.7e-40
WP_003731178.1|999840_1001709_-	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_003740367.1|1001695_1002100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721745.1|1002141_1002444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721744.1|1002491_1003004_-|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003728212.1|1003016_1003406_-	DUF5072 family protein	NA	NA	NA	NA	NA
WP_003724947.1|1003685_1004102_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	38.6	1.3e-20
WP_003724946.1|1004113_1004542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721740.1|1004758_1005094_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003728215.1|1005099_1005552_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
>prophage 3
NC_021830	Listeria monocytogenes J1816, complete sequence	2947460	1527933	1535778	2947460		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722610.1|1527933_1528893_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
WP_003725411.1|1529012_1529996_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	4.0e-52
WP_003741152.1|1530012_1531074_+	galactose mutarotase	NA	NA	NA	NA	NA
WP_003725409.1|1531115_1532846_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.1	9.5e-174
WP_003722606.1|1532953_1533829_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_003725408.1|1533830_1534799_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	3.9e-68
WP_003725407.1|1534806_1535778_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
>prophage 4
NC_021830	Listeria monocytogenes J1816, complete sequence	2947460	1678823	1706340	2947460	terminase	Listeria_phage(88.89%)	54	NA	NA
WP_003739618.1|1678823_1679171_+	helix-turn-helix transcriptional regulator	NA	A0A0A7RTK4	Clostridium_phage	40.7	9.9e-06
WP_003741076.1|1679225_1679702_-	competence protein ComK	NA	NA	NA	NA	NA
WP_020830684.1|1679692_1681051_-	recombinase family protein	NA	Q9T193	Listeria_phage	97.1	1.8e-252
WP_003725102.1|1681115_1681823_-	hypothetical protein	NA	A0A0B5CTT6	Listeria_phage	93.6	4.8e-116
WP_020830685.1|1681884_1682490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003725101.1|1682504_1682723_-	zinc ribbon domain-containing protein	NA	A0A059T6E3	Listeria_phage	95.8	2.3e-32
WP_003725099.1|1683266_1683575_-	helix-turn-helix transcriptional regulator	NA	A8ATX5	Listeria_phage	99.0	1.6e-47
WP_003725098.1|1683723_1683993_+	helix-turn-helix transcriptional regulator	NA	A8ATX6	Listeria_phage	86.5	3.9e-34
WP_003725144.1|1683997_1684183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020830686.1|1684142_1684406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003725140.1|1684420_1684654_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003741072.1|1684800_1685019_+	helix-turn-helix transcriptional regulator	NA	A0A1U9WQN6	Geobacillus_phage	44.0	1.2e-06
WP_003725096.1|1685022_1685199_+	hypothetical protein	NA	Q9T184	Listeria_phage	98.3	3.7e-09
WP_003725143.1|1685215_1685518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003733687.1|1685691_1685886_+	hypothetical protein	NA	A0A059T6E5	Listeria_phage	95.3	1.4e-25
WP_003733634.1|1685897_1686134_+	hypothetical protein	NA	A0A059T5E9	Listeria_phage	100.0	3.3e-37
WP_003727747.1|1686130_1686412_+	hypothetical protein	NA	A0A0B5CTX3	Listeria_phage	100.0	1.0e-40
WP_003727748.1|1686443_1686605_+	hypothetical protein	NA	A0A059T7X7	Listeria_phage	98.1	1.2e-19
WP_020830688.1|1686902_1687679_+	phage antirepressor KilAC domain-containing protein	NA	A0A0B5D0I2	Listeria_phage	100.0	1.1e-142
WP_020830689.1|1687800_1688331_+	hypothetical protein	NA	A8ATY1	Listeria_phage	86.7	1.9e-77
WP_020830690.1|1688320_1688527_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003727753.1|1688629_1688818_+	hypothetical protein	NA	A0A0B5CU43	Listeria_phage	98.4	1.0e-28
WP_003740962.1|1689050_1690010_+	YqaJ viral recombinase family protein	NA	A8ATY5	Listeria_phage	98.7	1.3e-177
WP_003740960.1|1690009_1690825_+	recombinase RecT	NA	A0A0B5CTU3	Listeria_phage	98.9	1.3e-149
WP_003740958.1|1690854_1691769_+	hypothetical protein	NA	I1W658	Staphylococcus_phage	39.3	5.1e-17
WP_003725084.1|1691765_1692038_+	hypothetical protein	NA	A0A059T6G3	Listeria_phage	91.6	3.6e-35
WP_003725083.1|1692034_1692595_+	DUF1642 domain-containing protein	NA	A8ATD8	Listeria_phage	72.0	9.2e-70
WP_003725137.1|1692591_1692798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003725082.1|1692784_1693168_+	hypothetical protein	NA	D2IZL0	Enterococcus_phage	66.7	2.3e-19
WP_003725081.1|1693171_1693360_+	SAM--benzoic acid carboxyl methyltransferase	NA	D7RWG4	Brochothrix_phage	49.1	4.4e-08
WP_020830692.1|1693577_1693979_+	hypothetical protein	NA	A0A059T6C9	Listeria_phage	76.7	1.9e-53
WP_020830693.1|1693975_1694254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020830694.1|1694253_1694736_+	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	92.5	1.1e-76
WP_003727772.1|1694755_1694938_+	hypothetical protein	NA	A8ASP6	Listeria_phage	79.4	8.5e-17
WP_041197789.1|1694882_1695287_+	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	85.8	9.9e-58
WP_020830696.1|1695290_1695704_+	DUF2481 family protein	NA	A8ASP8	Listeria_phage	44.2	1.6e-18
WP_003722548.1|1695722_1695878_+	hypothetical protein	NA	A0A0B5D186	Listeria_phage	96.1	3.3e-22
WP_020830697.1|1695965_1696538_+	sigma-70 family RNA polymerase sigma factor	NA	A0A0B5D145	Listeria_phage	88.4	1.3e-90
WP_003740921.1|1696808_1697036_+	hypothetical protein	NA	A8AU06	Listeria_phage	93.3	6.8e-32
WP_003740918.1|1697075_1697816_+	hypothetical protein	NA	A0A0B5CTX0	Listeria_phage	98.8	1.2e-133
WP_043993229.1|1697781_1699128_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0B5CYJ6	Listeria_phage	99.1	2.9e-263
WP_003740896.1|1699142_1700699_+	hypothetical protein	NA	A8ATU7	Listeria_phage	96.7	4.8e-294
WP_003725070.1|1700703_1701747_+	hypothetical protein	NA	A0A0B5D111	Listeria_phage	98.0	4.8e-197
WP_003740894.1|1701841_1702396_+	hypothetical protein	NA	A8ATU9	Listeria_phage	89.1	1.7e-84
WP_003740892.1|1702418_1703291_+	hypothetical protein	NA	A0A0B5CTX8	Listeria_phage	97.2	7.4e-159
WP_003723786.1|1703304_1703460_+	hypothetical protein	NA	A0A0B5CYK6	Listeria_phage	98.0	1.0e-18
WP_003740890.1|1703460_1703814_+	hypothetical protein	NA	A8ATV2	Listeria_phage	98.3	2.4e-60
WP_003740888.1|1703813_1704179_+	hypothetical protein	NA	A8ATV3	Listeria_phage	95.0	2.7e-62
WP_003740887.1|1704168_1704486_+	HK97 gp10 family phage protein	NA	A8ATV4	Listeria_phage	91.4	1.6e-47
WP_003740885.1|1704482_1704887_+	hypothetical protein	NA	A8ATV5	Listeria_phage	99.2	1.2e-63
WP_003723782.1|1704858_1705290_+	Ig domain-containing protein	NA	A0A0B5CYK8	Listeria_phage	82.9	8.1e-58
WP_041197790.1|1705312_1705552_+	Ig-like domain-containing protein	NA	A8ASK3	Listeria_phage	88.6	4.0e-30
WP_020830700.1|1705600_1706032_+	hypothetical protein	NA	A8ATV7	Listeria_phage	94.4	7.8e-69
WP_041197791.1|1706064_1706340_+	hypothetical protein	NA	A0A0B5D116	Listeria_phage	94.5	2.2e-40
>prophage 5
NC_021830	Listeria monocytogenes J1816, complete sequence	2947460	1711149	1719304	2947460	holin,tail,plate	Listeria_phage(100.0%)	11	NA	NA
WP_003740856.1|1711149_1711974_+|tail	phage tail family protein	tail	A0A0B5CTY7	Listeria_phage	98.9	8.6e-157
WP_003740854.1|1711986_1713000_+|tail	phage tail protein	tail	A0A0B5CYL4	Listeria_phage	100.0	1.2e-187
WP_010991151.1|1712996_1714025_+	hypothetical protein	NA	A0A0B5D0C2	Listeria_phage	100.0	2.2e-194
WP_003740845.1|1714021_1715095_+|plate	BppU family phage baseplate upper protein	plate	A0A0B5D119	Listeria_phage	100.0	2.5e-196
WP_003725055.1|1715091_1715433_+	hypothetical protein	NA	A8ASL1	Listeria_phage	100.0	4.2e-57
WP_003740843.1|1715433_1715580_+	XkdX family protein	NA	A0A0B5CYN8	Listeria_phage	100.0	1.5e-19
WP_003733957.1|1715620_1715926_+	hypothetical protein	NA	A0A059T5E6	Listeria_phage	100.0	1.8e-43
WP_020830702.1|1715925_1716207_+|holin	phage holin	holin	A0A059T664	Listeria_phage	98.9	5.1e-45
WP_003740832.1|1716206_1717076_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	A8ASL5	Listeria_phage	98.3	7.1e-170
WP_003725049.1|1718000_1718825_+	DUF3037 domain-containing protein	NA	NA	NA	NA	NA
WP_003725136.1|1719070_1719304_+	hypothetical protein	NA	A8ATC5	Listeria_phage	92.2	1.2e-34
>prophage 6
NC_021830	Listeria monocytogenes J1816, complete sequence	2947460	2251308	2259594	2947460		Synechococcus_phage(33.33%)	8	NA	NA
WP_003726215.1|2251308_2252601_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
WP_003726214.1|2252681_2253395_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.0e-40
WP_003726213.1|2253406_2253652_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_003726212.1|2253655_2254339_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003726211.1|2254331_2256551_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.7	2.5e-158
WP_003722245.1|2256535_2257963_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_003726210.1|2257981_2259031_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	3.2e-63
WP_003726209.1|2259027_2259594_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.4	8.3e-26
>prophage 7
NC_021830	Listeria monocytogenes J1816, complete sequence	2947460	2748898	2807495	2947460	tRNA,protease	Streptococcus_phage(16.67%)	57	NA	NA
WP_003726416.1|2748898_2750605_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003726415.1|2750645_2751908_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_003726414.1|2751921_2753064_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_003727496.1|2753078_2753867_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_031642179.1|2753880_2754639_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.1	3.3e-22
WP_003723450.1|2754869_2755427_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003723449.1|2755426_2756155_-	UMP kinase	NA	NA	NA	NA	NA
WP_003726672.1|2756446_2756821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012681273.1|2756798_2758004_+	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	46.6	7.0e-91
WP_144419052.1|2757993_2759274_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	51.2	1.2e-128
WP_003726669.1|2759306_2759813_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	66.7	1.4e-56
WP_003726668.1|2759834_2760566_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	58.0	2.3e-81
WP_003726667.1|2760614_2760854_-	YneF family protein	NA	NA	NA	NA	NA
WP_003734516.1|2761073_2763068_-	transketolase	NA	NA	NA	NA	NA
WP_003726567.1|2763214_2763442_-	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003726566.1|2763535_2763865_-	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_003723438.1|2764021_2764636_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_003726565.1|2764666_2765191_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003726564.1|2765224_2766520_-	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	62.6	2.5e-147
WP_003723435.1|2766663_2767998_-	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
WP_003719570.1|2768068_2768437_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003727505.1|2768638_2769865_-	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_012681271.1|2769857_2771081_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003719566.1|2771191_2771425_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_003726658.1|2771546_2772464_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003723738.1|2772590_2774267_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_003726657.1|2774499_2775198_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	31.9	6.4e-12
WP_003734520.1|2775410_2777297_+	peptidoglycan O-acetyltransferase OatA	NA	B5WZU0	Pseudomonas_phage	32.2	2.9e-43
WP_020830742.1|2777329_2779150_-	class 1 internalin InlK	NA	NA	NA	NA	NA
WP_003726814.1|2779776_2780244_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_020830743.1|2780327_2782787_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	8.1e-102
WP_003727510.1|2782783_2784751_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	5.1e-123
WP_003726699.1|2784931_2785339_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_003726698.1|2785496_2786093_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003726697.1|2786134_2787007_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003724130.1|2787009_2787321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003726696.1|2787343_2787763_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003726695.1|2787866_2788646_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_003727514.1|2788666_2790076_-|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	7.5e-44
WP_003724001.1|2790089_2790629_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003731303.1|2790649_2791552_-	tyrosine recombinase XerC	NA	A0A142K7N4	Mycobacterium_phage	29.5	1.8e-14
WP_003726401.1|2791834_2793139_-|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_003727517.1|2793201_2795280_-	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	5.4e-107
WP_003727518.1|2795552_2796413_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003727519.1|2796546_2797332_-	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	6.7e-26
WP_003726396.1|2797328_2798192_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003727520.1|2798201_2798744_-	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003726394.1|2798845_2799415_-	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003726393.1|2799449_2800016_-	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003723886.1|2800134_2801394_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723884.1|2801578_2802862_-	trigger factor	NA	NA	NA	NA	NA
WP_003727521.1|2802976_2803915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003731300.1|2804176_2804842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003727523.1|2804857_2805391_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003727524.1|2805514_2805730_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003723563.1|2805880_2806276_+	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003734523.1|2806355_2807495_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
