assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000195795.1_ASM19579v1	NC_003212	Listeria innocua Clip11262, complete genome	1	686795-686954	1	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas9	Orphan	GGAACTTCTGGTGTTTCGGGTTCTA	25	0	0	NA	NA	NA	3	3	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas9	NA|95aa|up_5|NC_003212.1_680806_681091_-,NA|70aa|down_0|NC_003212.1_687988_688198_+,NA|139aa|down_3|NC_003212.1_689708_690125_+	NA|217aa|up_9|NC_003212.1_675659_676310_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|607aa|up_8|NC_003212.1_676349_678170_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|464aa|up_7|NC_003212.1_678403_679795_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|280aa|up_6|NC_003212.1_679884_680724_+	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only]	NA|95aa|up_5|NC_003212.1_680806_681091_-	NA	NA|317aa|up_4|NC_003212.1_681187_682138_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|214aa|up_3|NC_003212.1_682161_682803_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|897aa|up_2|NC_003212.1_682844_685535_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|216aa|up_1|NC_003212.1_685581_686229_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|179aa|up_0|NC_003212.1_686237_686774_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|70aa|down_0|NC_003212.1_687988_688198_+	NA	NA|236aa|down_1|NC_003212.1_688271_688979_+	cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain	NA|188aa|down_2|NC_003212.1_689024_689588_-	COG2322, COG2322, Predicted membrane protein [Function unknown]	NA|139aa|down_3|NC_003212.1_689708_690125_+	NA	NA|618aa|down_4|NC_003212.1_690347_692201_+	NF033189, internalin_A, class 1 internalin InlA	NA|210aa|down_5|NC_003212.1_692345_692975_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|299aa|down_6|NC_003212.1_692971_693868_-	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|94aa|down_7|NC_003212.1_694102_694384_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|830aa|down_8|NC_003212.1_694665_697155_+	NF033186, internalin_K, class 1 internalin InlK	NA|103aa|down_9|NC_003212.1_697207_697516_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]
GCF_000195795.1_ASM19579v1	NC_003212	Listeria innocua Clip11262, complete genome	2	2356073-2356159	2	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas9	Orphan	AGCCACTAGAAAAATACCAACAGC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas9	NA,NA	NA|310aa|up_9|NC_003212.1_2346277_2347207_-	PRK12435, PRK12435, ferrochelatase; Provisional	NA|351aa|up_8|NC_003212.1_2347213_2348266_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|168aa|up_7|NC_003212.1_2348462_2348966_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|408aa|up_6|NC_003212.1_2349004_2350228_-	COG4473, EcsB, Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion]	NA|251aa|up_5|NC_003212.1_2350211_2350964_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|141aa|up_4|NC_003212.1_2351124_2351547_+	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|121aa|up_3|NC_003212.1_2351576_2351939_+	COG4980, GvpP, Gas vesicle protein [General function prediction only]	NA|180aa|up_2|NC_003212.1_2352118_2352658_+	pfam11667, DUF3267, Putative zincin peptidase	NA|292aa|up_1|NC_003212.1_2352774_2353650_+	PRK04405, prsA, peptidylprolyl isomerase; Provisional	NA|314aa|up_0|NC_003212.1_2353739_2354681_-	PRK13480, PRK13480, 3'-5' exoribonuclease YhaM; Provisional	NA|412aa|down_0|NC_003212.1_2357448_2358684_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|118aa|down_1|NC_003212.1_2358827_2359181_-	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|378aa|down_2|NC_003212.1_2359262_2360396_-	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_3|NC_003212.1_2360499_2361867_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|265aa|down_4|NC_003212.1_2361936_2362731_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|301aa|down_5|NC_003212.1_2362730_2363633_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|66aa|down_6|NC_003212.1_2363632_2363830_-	pfam13396, PLDc_N, Phospholipase_D-nuclease N-terminal	NA|715aa|down_7|NC_003212.1_2363935_2366080_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|142aa|down_8|NC_003212.1_2366403_2366829_+	COG0394, Wzb, Protein-tyrosine-phosphatase [Signal transduction mechanisms]	NA|290aa|down_9|NC_003212.1_2366891_2367761_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
GCF_000195795.1_ASM19579v1	NC_003212	Listeria innocua Clip11262, complete genome	3	2768992-2769687	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas9	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas9	Type II-C,Type II-A,Type II-B	GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	1	1	2769226-2769255	NC_003212.1_1724747-1724776	II-A,II-B:II-A,II-B:II-A,II-B	10,10,9	10	TypeII-C,TypeII-A,TypeII-B	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas9	NA|216aa|up_7|NC_003212.1_2756538_2757186_-,NA|160aa|up_0|NC_003212.1_2768471_2768951_-,NA	NA|494aa|up_9|NC_003212.1_2753935_2755417_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_8|NC_003212.1_2755517_2756405_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|216aa|up_7|NC_003212.1_2756538_2757186_-	NA	NA|179aa|up_6|NC_003212.1_2757202_2757739_-	pfam00413, Peptidase_M10, Matrixin	NA|343aa|up_5|NC_003212.1_2763808_2764837_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_4|NC_003212.1_2765100_2766627_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_3|NC_003212.1_2766670_2767522_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_2|NC_003212.1_2767543_2767966_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|122aa|up_1|NC_003212.1_2768086_2768452_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|160aa|up_0|NC_003212.1_2768471_2768951_-	NA	csn2|209aa|down_0|NC_003212.1_2769813_2770440_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas9|1335aa|down_1|NC_003212.1_2770706_2774711_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|131aa|down_2|NC_003212.1_2775149_2775542_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_3|NC_003212.1_2775563_2776001_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_4|NC_003212.1_2776195_2776942_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_5|NC_003212.1_2776947_2777745_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_6|NC_003212.1_2777747_2778614_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|280aa|down_7|NC_003212.1_2778589_2779429_-	PRK13635, cbiO, energy-coupling factor ABC transporter ATP-binding protein	NA|221aa|down_8|NC_003212.1_2779559_2780222_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|300aa|down_9|NC_003212.1_2780339_2781239_+	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]
GCF_000195795.1_ASM19579v1	NC_003383	Listeria innocua Clip11262 plasmid pLI100, complete sequence	1	76921-76996	1	CRISPRCasFinder	no	csa3	csa3	Type I-A	TGAGAAGATCACCAATAAAACTTC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas9	NA|115aa|up_9|NC_003383.1_67065_67410_+,NA|111aa|up_7|NC_003383.1_69034_69367_-,NA|330aa|up_2|NC_003383.1_74918_75908_-,NA|126aa|down_0|NC_003383.1_77057_77435_-	NA|115aa|up_9|NC_003383.1_67065_67410_+	NA	NA|427aa|up_8|NC_003383.1_67397_68678_+	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|111aa|up_7|NC_003383.1_69034_69367_-	NA	NA|282aa|up_6|NC_003383.1_69359_70205_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|550aa|up_5|NC_003383.1_70868_72518_+	pfam08708, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|227aa|up_4|NC_003383.1_72837_73518_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|268aa|up_3|NC_003383.1_73552_74356_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|330aa|up_2|NC_003383.1_74918_75908_-	NA	NA|87aa|up_1|NC_003383.1_75914_76175_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|190aa|up_0|NC_003383.1_76284_76854_-	cd17493, toxin_TenpN, type III toxin-antitoxin system toxin TenpN and similar proteins	NA|126aa|down_0|NC_003383.1_77057_77435_-	NA	NA|405aa|down_1|NC_003383.1_79041_80256_+	PRK00077, eno, enolase; Provisional	NA|385aa|down_2|NC_003383.1_80402_81557_+	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|98aa|down_3|NC_003383.1_81573_81867_+	pfam11313, DUF3116, Protein of unknown function (DUF3116)	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
