assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000195995.1_ASM19599v1	NC_003198	Salmonella enterica subsp. enterica serovar Typhi str. CT18, complete genome	1	2926182-2926567	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	c2c9_V-U4,DEDDh,WYL,cas3,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	TypeI-E	c2c9_V-U4,DEDDh,WYL,cas3,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NC_003198.1_2918048_2918810_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_003198.1_2918790_2919840_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_003198.1_2919836_2920316_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_003198.1_2920315_2921026_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_003198.1_2921044_2921356_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NC_003198.1_2921546_2921903_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_003198.1_2921920_2922526_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NC_003198.1_2922512_2923952_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_003198.1_2923961_2924870_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NC_003198.1_2925120_2926167_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_003198.1_2926651_2926945_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NC_003198.1_2926947_2927865_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|235aa|down_2|NC_003198.1_2927864_2928569_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_3|NC_003198.1_2928568_2929294_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NC_003198.1_2929303_2930362_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|NC_003198.1_2930384_2930987_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|down_6|NC_003198.1_2931003_2932539_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|318aa|down_7|NC_003198.1_2935977_2936931_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_8|NC_003198.1_2937018_2937753_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NC_003198.1_2937828_2939541_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_000195995.1_ASM19599v1	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	1	29588-29745	1	PILER-CR	no		csa3	Orphan	CCGTACCCGGTATAGTGGAT	20	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,DEDDh,WYL,cas3,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|156aa|up_9|NC_003384.1_18444_18912_-,NA|259aa|up_8|NC_003384.1_19771_20548_+,NA|259aa|up_7|NC_003384.1_20697_21474_+,NA|114aa|up_6|NC_003384.1_21662_22004_+,NA|88aa|up_5|NC_003384.1_22104_22368_+,NA|235aa|up_4|NC_003384.1_22595_23300_+,NA|172aa|down_0|NC_003384.1_29934_30450_-,NA|59aa|down_2|NC_003384.1_34002_34179_-,NA|386aa|down_4|NC_003384.1_36133_37291_-,NA|274aa|down_6|NC_003384.1_38489_39311_-,NA|67aa|down_8|NC_003384.1_40297_40498_-	NA|156aa|up_9|NC_003384.1_18444_18912_-	NA	NA|259aa|up_8|NC_003384.1_19771_20548_+	NA	NA|259aa|up_7|NC_003384.1_20697_21474_+	NA	NA|114aa|up_6|NC_003384.1_21662_22004_+	NA	NA|88aa|up_5|NC_003384.1_22104_22368_+	NA	NA|235aa|up_4|NC_003384.1_22595_23300_+	NA	NA|795aa|up_3|NC_003384.1_23839_26224_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|201aa|up_2|NC_003384.1_26474_27077_+	pfam13752, DUF4165, Domain of unknown function (DUF4165)	NA|79aa|up_1|NC_003384.1_27088_27325_+	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3)	NA|294aa|up_0|NC_003384.1_28467_29349_+	pfam16441, DUF5038, Domain of unknown function (DUF5038)	NA|172aa|down_0|NC_003384.1_29934_30450_-	NA	NA|819aa|down_1|NC_003384.1_31100_33557_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|59aa|down_2|NC_003384.1_34002_34179_-	NA	NA|559aa|down_3|NC_003384.1_34193_35870_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|386aa|down_4|NC_003384.1_36133_37291_-	NA	NA|275aa|down_5|NC_003384.1_37650_38475_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|274aa|down_6|NC_003384.1_38489_39311_-	NA	NA|236aa|down_7|NC_003384.1_39593_40301_-	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40	NA|67aa|down_8|NC_003384.1_40297_40498_-	NA	NA|359aa|down_9|NC_003384.1_40515_41592_-	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein
