assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000196035.1_ASM19603v1	NC_003210	Listeria monocytogenes EGD-e chromosome, complete genome	1	210313-210464	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,DEDDh	Unclear	CCAATGCTTCTTGGTTTTAATGCTCCTGCTACATCAGAACCGAGCTC	47	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA	NA|231aa|up_9|NC_003210.1_197511_198204_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NC_003210.1_198200_199409_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NC_003210.1_200093_200402_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NC_003210.1_200521_200830_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NC_003210.1_201216_202590_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NC_003210.1_202640_203597_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NC_003210.1_203639_204353_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NC_003210.1_204623_205577_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NC_003210.1_205818_207408_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NC_003210.1_207738_209271_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NC_003210.1_211424_212294_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NC_003210.1_212365_212689_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NC_003210.1_212823_213285_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NC_003210.1_213335_213668_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NC_003210.1_213734_214409_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NC_003210.1_214485_215427_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NC_003210.1_215720_216344_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NC_003210.1_216433_217018_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NC_003210.1_217124_217685_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NC_003210.1_217799_221339_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_000196035.1_ASM19603v1	NC_003210	Listeria monocytogenes EGD-e chromosome, complete genome	2	498828-499412	1	CRT	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	GATGTAAGTNATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA|158aa|down_0|NC_003210.1_500305_500779_+,NA|162aa|down_1|NC_003210.1_500798_501284_+,NA|89aa|down_3|NC_003210.1_501692_501959_+,NA|55aa|down_4|NC_003210.1_502197_502362_+,NA|79aa|down_5|NC_003210.1_502423_502660_-,NA|108aa|down_7|NC_003210.1_504673_504997_+,NA|102aa|down_8|NC_003210.1_504971_505277_+	NA|222aa|up_9|NC_003210.1_483933_484599_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|252aa|up_8|NC_003210.1_484619_485375_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_7|NC_003210.1_485492_487652_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_6|NC_003210.1_487648_488797_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_5|NC_003210.1_488801_489749_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_4|NC_003210.1_489904_491500_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_3|NC_003210.1_491633_492917_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_2|NC_003210.1_492917_494018_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_1|NC_003210.1_494010_495561_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_0|NC_003210.1_496380_497919_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|158aa|down_0|NC_003210.1_500305_500779_+	NA	NA|162aa|down_1|NC_003210.1_500798_501284_+	NA	NA|102aa|down_2|NC_003210.1_501311_501617_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NC_003210.1_501692_501959_+	NA	NA|55aa|down_4|NC_003210.1_502197_502362_+	NA	NA|79aa|down_5|NC_003210.1_502423_502660_-	NA	NA|577aa|down_6|NC_003210.1_502898_504629_+	pfam14280, DUF4365, Domain of unknown function (DUF4365)	NA|108aa|down_7|NC_003210.1_504673_504997_+	NA	NA|102aa|down_8|NC_003210.1_504971_505277_+	NA	NA|291aa|down_9|NC_003210.1_505350_506223_+	pfam14253, AbiH, Bacteriophage abortive infection AbiH
GCF_000196035.1_ASM19603v1	NC_003210	Listeria monocytogenes EGD-e chromosome, complete genome	3	544375-544663	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,4,4	4	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA|133aa|up_5|NC_003210.1_539364_539763_+,NA|193aa|down_0|NC_003210.1_544922_545501_+	NA|217aa|up_9|NC_003210.1_535427_536078_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NC_003210.1_536186_538247_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NC_003210.1_538250_538853_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NC_003210.1_538880_539348_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NC_003210.1_539364_539763_+	NA	NA|217aa|up_4|NC_003210.1_539773_540424_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NC_003210.1_540420_541467_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NC_003210.1_541482_541776_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NC_003210.1_541790_543062_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NC_003210.1_543201_544137_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NC_003210.1_544922_545501_+	NA	NA|227aa|down_1|NC_003210.1_545608_546289_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NC_003210.1_546313_546673_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NC_003210.1_546679_547138_-	pfam12802, MarR_2, MarR family	NA|606aa|down_4|NC_003210.1_547519_549337_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NC_003210.1_549437_549869_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NC_003210.1_549915_551346_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NC_003210.1_551466_552282_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|NC_003210.1_552562_552931_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NC_003210.1_553077_554493_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_000196035.1_ASM19603v1	NC_003210	Listeria monocytogenes EGD-e chromosome, complete genome	4	1136613-1136692	3	CRISPRCasFinder	no	csa3	csa3,DinG,cas3,WYL,casR,DEDDh	Type I-A	AAACATTCAAGTGTTTGTTTGAATA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA|74aa|down_8|NC_003210.1_1145722_1145944_-,NA|97aa|down_9|NC_003210.1_1145940_1146231_-	NA|497aa|up_9|NC_003210.1_1126703_1128194_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|275aa|up_8|NC_003210.1_1128205_1129030_+	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|103aa|up_7|NC_003210.1_1129042_1129351_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|135aa|up_6|NC_003210.1_1129411_1129816_+	COG1440, CelA, Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]	NA|519aa|up_5|NC_003210.1_1129944_1131501_+	PRK00074, guaA, GMP synthase; Reviewed	NA|401aa|up_4|NC_003210.1_1131557_1132760_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|up_3|NC_003210.1_1132786_1132987_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|up_2|NC_003210.1_1133465_1133696_-	pfam12645, HTH_16, Helix-turn-helix domain	NA|140aa|up_1|NC_003210.1_1133697_1134117_-	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|708aa|up_0|NC_003210.1_1134471_1136595_-	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase	NA|167aa|down_0|NC_003210.1_1136899_1137400_+	PRK14797, PRK14797, lipoprotein signal peptidase; Provisional	csa3|112aa|down_1|NC_003210.1_1137532_1137868_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|306aa|down_2|NC_003210.1_1137996_1138914_-	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|337aa|down_3|NC_003210.1_1138929_1139940_-	pfam13702, Lysozyme_like, Lysozyme-like	NA|720aa|down_4|NC_003210.1_1139939_1142099_-	pfam01490, Aa_trans, Transmembrane amino acid transporter protein	NA|817aa|down_5|NC_003210.1_1142098_1144549_-	pfam12846, AAA_10, AAA-like domain	NA|132aa|down_6|NC_003210.1_1144532_1144928_-	pfam12648, TcpE, TcpE family	NA|167aa|down_7|NC_003210.1_1145210_1145711_-	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|74aa|down_8|NC_003210.1_1145722_1145944_-	NA	NA|97aa|down_9|NC_003210.1_1145940_1146231_-	NA
GCF_000196035.1_ASM19603v1	NC_003210	Listeria monocytogenes EGD-e chromosome, complete genome	5	2779697-2779807	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA|74aa|down_2|NC_003210.1_2780576_2780798_-,NA|52aa|down_4|NC_003210.1_2782738_2782894_+,NA|214aa|down_5|NC_003210.1_2783465_2784107_-,NA|107aa|down_6|NC_003210.1_2784353_2784674_+	NA|330aa|up_9|NC_003210.1_2771622_2772612_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NC_003210.1_2772633_2773230_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NC_003210.1_2773233_2773608_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NC_003210.1_2773713_2774565_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NC_003210.1_2774683_2775523_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NC_003210.1_2775643_2776486_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NC_003210.1_2776531_2776777_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NC_003210.1_2776791_2777388_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NC_003210.1_2777496_2777814_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NC_003210.1_2777843_2779583_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NC_003210.1_2779909_2780374_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NC_003210.1_2780391_2780574_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NC_003210.1_2780576_2780798_-	NA	NA|455aa|down_3|NC_003210.1_2780932_2782297_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NC_003210.1_2782738_2782894_+	NA	NA|214aa|down_5|NC_003210.1_2783465_2784107_-	NA	NA|107aa|down_6|NC_003210.1_2784353_2784674_+	NA	NA|505aa|down_7|NC_003210.1_2784804_2786319_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_8|NC_003210.1_2786434_2787373_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_9|NC_003210.1_2787415_2788363_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain
