The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_003210	Listeria monocytogenes EGD-e chromosome, complete genome	2944528	120653	127178	2944528	tail	Listeria_phage(33.33%)	10	NA	NA
NP_463646.1|120653_121106_-	hypothetical protein	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
NP_463647.1|121111_121447_-	repressor C1	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
NP_463648.1|121663_122092_+	hypothetical protein	NA	NA	NA	NA	NA
NP_463649.1|122103_122520_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	1.3e-20
NP_463650.1|122797_123187_+	antigen B	NA	NA	NA	NA	NA
NP_463651.1|123199_123712_+	antigen A	NA	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
NP_463652.1|123759_124062_+	hypothetical protein	NA	NA	NA	NA	NA
NP_463653.1|124103_124508_+	hypothetical protein	NA	NA	NA	NA	NA
NP_463654.1|124494_126363_+|tail	phage tail protein	tail	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
NP_463655.1|126359_127178_+	hypothetical protein	NA	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
>prophage 2
NC_003210	Listeria monocytogenes EGD-e chromosome, complete genome	2944528	1124078	1149720	2944528	integrase	Streptococcus_phage(66.67%)	27	1129850:1129865	1153642:1153657
NP_464614.1|1124078_1124462_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
NP_464615.1|1124483_1125467_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
NP_464616.1|1125481_1126495_+	glysosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
NP_464617.1|1126703_1128194_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
NP_464618.1|1128205_1129030_+	NAD synthetase	NA	G3MA24	Bacillus_virus	52.6	7.4e-68
NP_464619.1|1129042_1129351_+	hypothetical protein	NA	NA	NA	NA	NA
NP_464620.1|1129411_1129816_+	PTS cellbiose transporter subunit IIB	NA	NA	NA	NA	NA
1129850:1129865	attL	GAAAGAAGATGAAAAG	NA	NA	NA	NA
NP_464621.1|1129944_1131501_+	GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
NP_464622.1|1131557_1132760_-|integrase	integrase	integrase	A0A0S2MV79	Bacillus_phage	32.8	2.7e-42
YP_008475635.1|1132786_1132987_-	hypothetical protein	NA	NA	NA	NA	NA
NP_464623.1|1133465_1133696_-	hypothetical protein	NA	NA	NA	NA	NA
NP_464624.1|1133697_1134117_-	hypothetical protein	NA	A0A1S5SEW0	Streptococcus_phage	31.3	2.9e-12
NP_464625.1|1134471_1136595_-	cadmium resistance protein	NA	E4ZFI9	Streptococcus_phage	63.3	2.9e-241
NP_464626.1|1136899_1137400_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
NP_464627.1|1137532_1137868_-	cadmium efflux system accessory protein	NA	E4ZFI8	Streptococcus_phage	47.1	3.4e-19
NP_464628.1|1137996_1138914_-	hypothetical protein	NA	A0A1S5SF22	Streptococcus_phage	58.0	5.7e-85
NP_464629.1|1138929_1139940_-	P60 protein	NA	A0A1S5SEZ8	Streptococcus_phage	74.8	2.4e-140
NP_464630.1|1139939_1142099_-	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	64.9	3.2e-195
NP_464631.1|1142098_1144549_-	hypothetical protein	NA	A0A1S5SF64	Streptococcus_phage	82.1	0.0e+00
NP_464632.1|1144532_1144928_-	hypothetical protein	NA	A0A1S5SEX7	Streptococcus_phage	71.0	7.0e-48
NP_464633.1|1145210_1145711_-	hypothetical protein	NA	A0A1S5SF25	Streptococcus_phage	61.6	2.4e-53
NP_464634.1|1145722_1145944_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	94.5	8.1e-30
NP_464635.1|1145940_1146231_-	hypothetical protein	NA	NA	NA	NA	NA
NP_464636.1|1146227_1147412_-	hypothetical protein	NA	A0A1S5SEX3	Streptococcus_phage	65.7	5.2e-155
NP_464637.1|1147602_1149003_-	hypothetical protein	NA	A0A1S5SFB5	Streptococcus_phage	67.4	2.1e-179
NP_464638.1|1149010_1149385_-	hypothetical protein	NA	A0A1S5SF96	Streptococcus_phage	65.4	9.6e-39
NP_464639.1|1149405_1149720_-	hypothetical protein	NA	A0A1S5SF38	Streptococcus_phage	81.6	1.1e-43
1153642:1153657	attR	GAAAGAAGATGAAAAG	NA	NA	NA	NA
>prophage 3
NC_003210	Listeria monocytogenes EGD-e chromosome, complete genome	2944528	1838050	1846336	2944528		Synechococcus_phage(33.33%)	8	NA	NA
NP_465291.1|1838050_1838617_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
NP_465292.1|1838613_1839663_-	phosphoribosylaminoimidazole synthetase	NA	Q58MH8	Prochlorococcus_phage	43.2	1.0e-61
NP_465293.1|1839681_1841109_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	31.9	8.1e-54
NP_465294.1|1841093_1843313_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	41.2	2.0e-160
NP_465295.1|1843305_1843989_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
NP_465296.1|1843992_1844238_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
NP_465297.1|1844249_1844963_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.3e-41
NP_465298.1|1845043_1846336_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	7.2e-17
>prophage 4
NC_003210	Listeria monocytogenes EGD-e chromosome, complete genome	2944528	2360907	2403235	2944528	coat,integrase,terminase,holin,tail,portal	Listeria_phage(96.61%)	66	2357501:2357516	2411019:2411034
2357501:2357516	attL	TTTTGTTTTATTTTCA	NA	NA	NA	NA
NP_465795.1|2360907_2361141_-	hypothetical protein	NA	A0A059T6E1	Listeria_phage	93.5	8.9e-35
NP_465796.1|2361581_2361791_+	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	98.6	1.9e-28
NP_465797.1|2361896_2362274_+	hypothetical protein	NA	Q9T194	Listeria_phage	89.6	2.6e-60
NP_465798.1|2362305_2362656_+	protein gp29	NA	Q9T195	Listeria_phage	93.1	7.5e-54
NP_465799.1|2362660_2363110_+	protein gp28	NA	A8ATW7	Listeria_phage	97.3	6.5e-74
NP_465800.1|2363134_2363632_+	hypothetical protein	NA	A8ATW6	Listeria_phage	97.6	1.8e-88
NP_465801.1|2363708_2364260_-	hypothetical protein	NA	A8ASL6	Listeria_phage	95.6	7.4e-96
NP_465802.1|2364753_2365599_-	L-alanoyl-D-glutamate peptidase	NA	A0A059T7Y8	Listeria_phage	96.1	1.2e-140
NP_465803.1|2365598_2365880_-|holin	holin	holin	A8ASL4	Listeria_phage	93.5	1.3e-40
NP_465804.1|2365892_2366258_-	protein gp23	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
NP_465805.1|2366287_2366446_-	protein gp22	NA	Q9T1A1	Listeria_phage	98.1	3.0e-18
NP_465806.1|2366450_2366768_-	protein gp21	NA	Q9T1A2	Listeria_phage	92.4	1.3e-49
NP_465807.1|2366779_2367853_-	protein gp20	NA	Q9T1A3	Listeria_phage	95.0	1.4e-188
NP_465808.1|2367852_2368881_-	protein gp19	NA	Q9T1A4	Listeria_phage	100.0	4.6e-192
NP_465809.1|2368881_2369907_-	protein gp18	NA	Q9T1A5	Listeria_phage	95.3	1.9e-193
NP_465810.1|2369915_2370734_-	protein gp17	NA	Q9T1A6	Listeria_phage	93.8	2.2e-149
NP_465811.1|2370735_2376099_-	tape-measure	NA	A0A0B5CU25	Listeria_phage	84.6	0.0e+00
NP_465812.1|2376109_2376715_-	protein gp15	NA	Q9T1A8	Listeria_phage	100.0	1.3e-109
NP_465813.1|2376720_2377143_-	protein gp14	NA	Q9T1A9	Listeria_phage	100.0	4.1e-70
NP_465814.1|2377197_2377530_-	protein gp13	NA	Q9T1B0	Listeria_phage	99.1	1.8e-49
NP_465815.1|2377459_2377894_-|tail	major tail shaft protein	tail	Q9T1B1	Listeria_phage	97.9	3.0e-76
NP_465816.1|2377896_2378304_-	protein gp11	NA	A8ASK1	Listeria_phage	99.3	2.0e-66
NP_465817.1|2378303_2378642_-	protein gp10	NA	A8ASK0	Listeria_phage	98.2	7.0e-57
NP_465818.1|2378641_2379004_-	protein gp9	NA	Q9T1B4	Listeria_phage	95.0	1.7e-61
NP_465819.1|2379003_2379399_-	protein gp8	NA	A0A059T5E3	Listeria_phage	97.7	4.8e-65
NP_465820.1|2379417_2380419_-|coat	phage coat protein	coat	A0A059T6D4	Listeria_phage	98.8	4.1e-185
NP_465821.1|2380418_2381009_-	scaffolding protein	NA	Q9T1B8	Listeria_phage	89.2	7.7e-75
NP_465822.1|2381087_2382227_-	protein gp4	NA	Q9T1B9	Listeria_phage	93.9	1.5e-199
NP_465823.1|2382227_2383988_-|portal	portal protein	portal	Q9T1C0	Listeria_phage	92.9	6.3e-266
NP_465824.1|2384000_2385332_-|terminase	terminase large subunit from bacteriophage A118	terminase	Q9T1C1	Listeria_phage	98.0	1.1e-259
NP_465825.1|2385300_2386095_-|terminase	terminase	terminase	A8ASJ1	Listeria_phage	70.4	1.6e-11
NP_465826.1|2386140_2386680_-	hypothetical protein	NA	NA	NA	NA	NA
NP_465827.1|2387045_2387480_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	99.3	4.3e-75
NP_465828.1|2387498_2387663_-	hypothetical protein	NA	A8ASQ0	Listeria_phage	92.6	2.5e-20
NP_465829.1|2387791_2388175_-	hypothetical protein	NA	A0A0B5CYS3	Listeria_phage	97.6	2.0e-63
NP_465830.1|2388178_2388583_-	hypothetical protein	NA	A8ASP7	Listeria_phage	85.8	1.2e-58
NP_465831.1|2388527_2388710_-	hypothetical protein	NA	A8ASP6	Listeria_phage	77.8	1.4e-16
NP_465832.1|2388728_2389211_-	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	98.8	2.0e-81
NP_465833.1|2389207_2389387_-	hypothetical protein	NA	A0A076G7F4	Listeria_phage	87.3	8.1e-20
NP_465834.1|2389490_2389658_-	hypothetical protein	NA	NA	NA	NA	NA
NP_465835.1|2389654_2390116_-	hypothetical protein	NA	D9J0I6	Brochothrix_phage	35.9	6.7e-18
NP_465836.1|2390112_2390583_-	hypothetical protein	NA	A0A060AFJ6	Listeria_phage	89.7	2.9e-40
NP_465837.1|2390579_2391023_-	hypothetical protein	NA	A8ASP1	Listeria_phage	87.1	2.1e-45
NP_465838.1|2391019_2391217_-	hypothetical protein	NA	A0A0B5CU49	Listeria_phage	95.4	2.0e-27
NP_465839.1|2391219_2391816_-	hypothetical protein	NA	Q8W5X2	Listeria_phage	52.5	5.8e-54
NP_465840.1|2391812_2392625_-	site-specific DNA-methyltransferase	NA	Q8W5X3	Listeria_phage	95.6	4.8e-152
NP_465841.1|2392621_2393596_-	hypothetical protein	NA	A8ASN4	Listeria_phage	92.0	1.3e-164
NP_465842.1|2393612_2394311_-	hypothetical protein	NA	A0A059T676	Listeria_phage	100.0	1.1e-109
NP_465843.1|2394316_2394793_-	hypothetical protein	NA	A0A059T5F1	Listeria_phage	80.4	3.4e-57
NP_465844.1|2394789_2394984_-	hypothetical protein	NA	A0A059T6E8	Listeria_phage	100.0	1.6e-29
NP_465845.1|2395289_2395478_-	hypothetical protein	NA	Q9T175	Listeria_phage	79.0	2.0e-21
NP_465846.1|2395585_2395801_-	gp44	NA	Q9T176	Listeria_phage	94.4	1.1e-28
NP_465847.1|2395797_2396331_-	hypothetical protein	NA	A8ATY1	Listeria_phage	86.7	7.4e-77
NP_465848.1|2396453_2397230_-	anti-repressor	NA	A0A0B5D0I2	Listeria_phage	98.8	1.6e-141
NP_465849.1|2397211_2397487_-	hypothetical protein	NA	NA	NA	NA	NA
YP_008475639.1|2397293_2397491_+	hypothetical protein	NA	Q9T179	Listeria_phage	96.0	4.0e-20
NP_465850.1|2397492_2397774_-	hypothetical protein	NA	A8ATX8	Listeria_phage	95.7	1.8e-37
NP_465851.1|2397799_2398084_-	hypothetical protein	NA	A0A0B5D168	Listeria_phage	85.1	4.5e-41
NP_465852.1|2398286_2398529_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
NP_465853.1|2398684_2399161_+	hypothetical protein	NA	A8ASM2	Listeria_phage	62.0	9.0e-42
YP_008475640.1|2399319_2399487_+	hypothetical protein	NA	NA	NA	NA	NA
NP_465854.1|2399541_2400243_+	hypothetical protein	NA	A0A0B5D125	Listeria_phage	86.3	4.7e-87
NP_465855.1|2400263_2400944_+	hypothetical protein	NA	NA	NA	NA	NA
NP_465856.1|2401007_2402366_+|integrase	integrase	integrase	Q8LTD8	Listeria_phage	98.9	2.3e-255
YP_008475641.1|2402356_2402833_+	hypothetical protein	NA	NA	NA	NA	NA
NP_465857.1|2402887_2403235_-	transcriptional regulator	NA	A0A0A7RTK4	Clostridium_phage	40.7	9.9e-06
2411019:2411034	attR	TTTTGTTTTATTTTCA	NA	NA	NA	NA
>prophage 5
NC_003210	Listeria monocytogenes EGD-e chromosome, complete genome	2944528	2546529	2554373	2944528		Streptococcus_phage(50.0%)	7	NA	NA
NP_465995.1|2546529_2547501_-	hypothetical protein	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
NP_465996.1|2547508_2548477_-	hypothetical protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
NP_465997.1|2548478_2549354_-	hypothetical protein	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.2e-08
NP_465998.1|2549461_2551192_-	phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	54.0	1.3e-175
NP_465999.1|2551233_2552295_-	aldose 1-epimerase	NA	NA	NA	NA	NA
NP_466000.1|2552311_2553295_-	UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	37.2	2.6e-51
NP_466001.1|2553413_2554373_-	thioredoxin reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
