assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000196555.1_ASM19655v1	NC_015067	Bifidobacterium longum subsp. longum JCM 1217, complete genome	1	179737-180105	1	CRISPRCasFinder	no		csa3,cas3,c2c9_V-U4,DEDDh,WYL,casR	Orphan	CGATGACCCGTGGAATCAACCGCA	24	0	0	NA	NA	NA	6	6	Orphan	csa3,cas3,c2c9_V-U4,DEDDh,WYL,casR	NA|201aa|up_5|NC_015067.1_173287_173890_+,NA|99aa|down_2|NC_015067.1_182476_182773_+,NA|207aa|down_7|NC_015067.1_187374_187995_+,NA|57aa|down_8|NC_015067.1_188068_188239_+	NA|242aa|up_9|NC_015067.1_169662_170388_+	PRK10847, PRK10847, DedA family protein	NA|317aa|up_8|NC_015067.1_170610_171561_+	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|356aa|up_7|NC_015067.1_171567_172635_+	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|219aa|up_6|NC_015067.1_172634_173291_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|201aa|up_5|NC_015067.1_173287_173890_+	NA	NA|96aa|up_4|NC_015067.1_174174_174462_+	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|126aa|up_3|NC_015067.1_174467_174845_+	pfam07811, TadE, TadE-like protein	NA|126aa|up_2|NC_015067.1_174894_175272_+	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|377aa|up_1|NC_015067.1_175320_176451_+	PRK11914, PRK11914, diacylglycerol kinase; Reviewed	NA|200aa|up_0|NC_015067.1_176648_177248_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|201aa|down_0|NC_015067.1_180380_180983_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|378aa|down_1|NC_015067.1_180979_182113_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|99aa|down_2|NC_015067.1_182476_182773_+	NA	NA|428aa|down_3|NC_015067.1_183000_184284_+	pfam13635, DUF4143, Domain of unknown function (DUF4143)	NA|255aa|down_4|NC_015067.1_184644_185409_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|189aa|down_5|NC_015067.1_185464_186031_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|365aa|down_6|NC_015067.1_186112_187207_-	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed	NA|207aa|down_7|NC_015067.1_187374_187995_+	NA	NA|57aa|down_8|NC_015067.1_188068_188239_+	NA	NA|489aa|down_9|NC_015067.1_188329_189796_+	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain
GCF_000196555.1_ASM19655v1	NC_015067	Bifidobacterium longum subsp. longum JCM 1217, complete genome	2	301823-301908	2	CRISPRCasFinder	no		csa3,cas3,c2c9_V-U4,DEDDh,WYL,casR	Orphan	GACAGCTCCCGCCAGCGGGAGCACTT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,c2c9_V-U4,DEDDh,WYL,casR	NA,NA|695aa|down_6|NC_015067.1_310364_312449_+	NA|560aa|up_9|NC_015067.1_289323_291003_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|245aa|up_8|NC_015067.1_291236_291971_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|903aa|up_7|NC_015067.1_292054_294763_-	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|94aa|up_6|NC_015067.1_294874_295156_+	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown]	NA|475aa|up_5|NC_015067.1_295198_296623_+	pfam02646, RmuC, RmuC family	NA|210aa|up_4|NC_015067.1_296619_297249_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|283aa|up_3|NC_015067.1_297342_298191_+	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|100aa|up_2|NC_015067.1_298357_298657_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|514aa|up_1|NC_015067.1_298660_300202_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|500aa|up_0|NC_015067.1_300227_301727_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|355aa|down_0|NC_015067.1_302022_303087_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|105aa|down_1|NC_015067.1_303097_303412_+	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|618aa|down_2|NC_015067.1_303585_305439_+	cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction	NA|538aa|down_3|NC_015067.1_305657_307271_+	PRK07208, PRK07208, hypothetical protein; Provisional	NA|690aa|down_4|NC_015067.1_307476_309546_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|130aa|down_5|NC_015067.1_309853_310243_+	PRK09239, PRK09239, chorismate mutase; Provisional	NA|695aa|down_6|NC_015067.1_310364_312449_+	NA	NA|912aa|down_7|NC_015067.1_312674_315410_-	NF000540, alt_ValS, valine--tRNA ligase	NA|509aa|down_8|NC_015067.1_315553_317080_-	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|229aa|down_9|NC_015067.1_317141_317828_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
GCF_000196555.1_ASM19655v1	NC_015067	Bifidobacterium longum subsp. longum JCM 1217, complete genome	3	1467665-1467745	3	CRISPRCasFinder	no		csa3,cas3,c2c9_V-U4,DEDDh,WYL,casR	Orphan	CGCACAGTGAAACCGTCTCATAT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,c2c9_V-U4,DEDDh,WYL,casR	NA|107aa|up_5|NC_015067.1_1458012_1458333_-,NA|284aa|down_0|NC_015067.1_1468645_1469497_+	NA|170aa|up_9|NC_015067.1_1453889_1454399_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|353aa|up_8|NC_015067.1_1454438_1455497_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|319aa|up_7|NC_015067.1_1455721_1456678_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|315aa|up_6|NC_015067.1_1456802_1457747_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|107aa|up_5|NC_015067.1_1458012_1458333_-	NA	NA|251aa|up_4|NC_015067.1_1458332_1459085_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|518aa|up_3|NC_015067.1_1459259_1460813_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|332aa|up_2|NC_015067.1_1460934_1461930_+	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|1226aa|up_1|NC_015067.1_1462048_1465726_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|535aa|up_0|NC_015067.1_1465786_1467391_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|284aa|down_0|NC_015067.1_1468645_1469497_+	NA	NA|532aa|down_1|NC_015067.1_1469800_1471396_+	cd01087, Prolidase, Prolidase	NA|174aa|down_2|NC_015067.1_1471444_1471966_+	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|570aa|down_3|NC_015067.1_1472015_1473725_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|390aa|down_4|NC_015067.1_1473728_1474898_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|364aa|down_5|NC_015067.1_1474899_1475991_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|545aa|down_6|NC_015067.1_1476159_1477794_-	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|428aa|down_7|NC_015067.1_1478073_1479357_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|271aa|down_8|NC_015067.1_1479412_1480225_-	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|375aa|down_9|NC_015067.1_1480562_1481687_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCF_000196555.1_ASM19655v1	NC_015067	Bifidobacterium longum subsp. longum JCM 1217, complete genome	4	1966971-1967056	4	CRISPRCasFinder	no		csa3,cas3,c2c9_V-U4,DEDDh,WYL,casR	Orphan	GGCCCTGAGCGTGCGGGCGCGGA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,c2c9_V-U4,DEDDh,WYL,casR	NA|51aa|up_8|NC_015067.1_1956677_1956830_-,NA|30aa|up_5|NC_015067.1_1959059_1959149_-,NA|211aa|up_4|NC_015067.1_1959340_1959973_-,NA|243aa|down_1|NC_015067.1_1969136_1969865_+,NA|104aa|down_6|NC_015067.1_1977014_1977326_+	NA|539aa|up_9|NC_015067.1_1954902_1956519_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|51aa|up_8|NC_015067.1_1956677_1956830_-	NA	NA|309aa|up_7|NC_015067.1_1957151_1958078_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|233aa|up_6|NC_015067.1_1958208_1958907_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|30aa|up_5|NC_015067.1_1959059_1959149_-	NA	NA|211aa|up_4|NC_015067.1_1959340_1959973_-	NA	NA|513aa|up_3|NC_015067.1_1960100_1961639_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|375aa|up_2|NC_015067.1_1961653_1962778_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|388aa|up_1|NC_015067.1_1962875_1964039_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|158aa|up_0|NC_015067.1_1964040_1964514_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|356aa|down_0|NC_015067.1_1967861_1968929_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|243aa|down_1|NC_015067.1_1969136_1969865_+	NA	NA|348aa|down_2|NC_015067.1_1969905_1970949_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|523aa|down_3|NC_015067.1_1971481_1973050_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|267aa|down_4|NC_015067.1_1973859_1974660_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|727aa|down_5|NC_015067.1_1974866_1977047_-	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|104aa|down_6|NC_015067.1_1977014_1977326_+	NA	NA|304aa|down_7|NC_015067.1_1977322_1978234_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|181aa|down_8|NC_015067.1_1978315_1978858_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|332aa|down_9|NC_015067.1_1978957_1979953_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
