The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_014920	Haemophilus influenzae F3031, complete genome	1985832	63945	117875	1985832	head,tail,plate,portal,tRNA,holin,capsid,integrase	Haemophilus_virus(57.5%)	61	103249:103266	125253:125270
WP_013525421.1|63945_64422_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_005649777.1|64429_65728_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A142F1B8	Bacillus_phage	39.8	3.6e-08
WP_041174876.1|65728_67618_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.3	9.4e-66
WP_005693854.1|67625_68561_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_013525423.1|68566_71512_+	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
WP_013525424.1|71596_73273_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_013525425.1|73384_74275_-	NAD(+) kinase	NA	NA	NA	NA	NA
WP_138571554.1|74374_74971_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_005687534.1|74983_75328_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_013525427.1|75320_75761_-	nucleotidyltransferase substrate binding protein	NA	NA	NA	NA	NA
WP_013525428.1|76041_78165_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	62.2	6.9e-259
WP_011271817.1|78283_79144_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
WP_011271818.1|79304_80684_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	29.7	8.7e-53
WP_013525429.1|80786_81296_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_013525430.1|81350_82139_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_041174877.1|82200_82458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013525431.1|82468_82741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013525432.1|82790_83114_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	41.4	2.2e-15
WP_013525433.1|83233_84229_-	2-hydroxyacid dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	39.6	6.4e-66
WP_013525434.1|84241_85351_-	methionine biosynthesis PLP-dependent protein	NA	NA	NA	NA	NA
WP_013525435.1|86541_88143_-	hypothetical protein	NA	Q94MX6	Haemophilus_virus	98.7	4.0e-283
WP_013525436.1|88143_88704_-	hypothetical protein	NA	Q94MX7	Haemophilus_virus	97.3	3.6e-82
WP_041174878.1|88690_89458_-	hypothetical protein	NA	Q94MX8	Haemophilus_virus	98.8	7.3e-134
WP_013525438.1|89476_89746_-	hypothetical protein	NA	Q776W9	Haemophilus_phage	74.4	5.3e-31
WP_013525439.1|89724_90339_-	hypothetical protein	NA	Q7Y5S1	Haemophilus_phage	45.6	2.1e-19
WP_013525440.1|90417_90696_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A0M3LQB1	Mannheimia_phage	46.7	2.6e-17
WP_013525441.1|90706_91024_+	HigA family addiction module antidote protein	NA	A0A2L1IV52	Escherichia_phage	37.7	4.1e-06
WP_013525442.1|91069_93751_-|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	63.9	0.0e+00
WP_013525443.1|93777_94302_-	hypothetical protein	NA	Q94MY1	Haemophilus_virus	97.7	3.5e-95
WP_013525444.1|94311_95481_-|plate	baseplate J/gp47 family protein	plate	Q94MY2	Haemophilus_virus	92.7	1.1e-205
WP_013525445.1|95473_95809_-	DUF2590 family protein	NA	Q94MY3	Haemophilus_virus	94.6	2.8e-50
WP_013525446.1|95812_98089_-|tail	phage tail tape measure protein	tail	Q94MY4	Haemophilus_virus	76.1	3.5e-309
WP_013525447.1|98275_98584_-	hypothetical protein	NA	Q775G2	Haemophilus_virus	98.0	3.5e-47
WP_013525448.1|98764_99112_-	hypothetical protein	NA	Q94MY5	Haemophilus_virus	89.6	3.0e-47
WP_013525449.1|99096_99657_-	lysozyme	NA	Q94MY6	Haemophilus_virus	92.7	2.5e-91
WP_041174879.1|99649_99886_-|holin	holin	holin	Q94MY7	Haemophilus_virus	97.4	5.3e-35
WP_013525450.1|99972_100425_-	DUF2597 family protein	NA	Q94MY8	Haemophilus_virus	95.8	1.2e-72
WP_013525451.1|100428_101559_-	DUF2586 domain-containing protein	NA	Q94MY9	Haemophilus_virus	97.3	2.1e-214
WP_013525452.1|101820_102546_-	phage virion morphogenesis protein	NA	Q1I0Z5	Pasteurella_virus	32.1	1.8e-17
WP_013525453.1|102542_103025_-|tail	phage tail protein	tail	Q94MZ1	Haemophilus_virus	63.5	5.5e-55
WP_013525454.1|103012_103465_-|head	head completion/stabilization protein	head	Q94MZ2	Haemophilus_virus	96.7	3.4e-75
103249:103266	attL	CAGAATTGACCGCACTTT	NA	NA	NA	NA
WP_013525456.1|104316_105327_-|capsid	phage major capsid protein, P2 family	capsid	Q94MZ4	Haemophilus_virus	94.9	1.4e-180
WP_013525457.1|105330_106218_-|capsid	GPO family capsid scaffolding protein	capsid	Q94MZ5	Haemophilus_virus	68.0	4.0e-91
WP_013525459.1|108215_109250_+|portal	phage portal protein	portal	Q94MZ7	Haemophilus_virus	98.6	6.9e-196
WP_013525460.1|109331_109592_+	ogr/Delta-like zinc finger family protein	NA	Q1I103	Pasteurella_virus	52.4	4.3e-22
WP_013525461.1|109622_110030_-	type II toxin-antitoxin system HicB family antitoxin	NA	Q775F5	Haemophilus_virus	66.7	4.7e-47
WP_041174880.1|110093_110273_-	type II toxin-antitoxin system HicA family toxin	NA	A0A0D4DC32	Acinetobacter_phage	72.9	2.2e-17
WP_013525462.1|110352_110871_-	phage N-6-adenine-methyltransferase	NA	Q94MZ8	Haemophilus_virus	97.0	1.0e-94
WP_013525463.1|110880_111186_-	hypothetical protein	NA	Q94MZ9	Haemophilus_virus	78.8	5.8e-34
WP_013525464.1|111197_113537_-	replication endonuclease	NA	Q94N00	Haemophilus_virus	94.1	0.0e+00
WP_013525465.1|113597_113933_-	hypothetical protein	NA	P79676	Haemophilus_phage	94.6	1.6e-56
WP_013525466.1|113951_114455_-	hypothetical protein	NA	P79675	Haemophilus_phage	91.6	5.7e-79
WP_041174881.1|114587_114827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041174882.1|114823_115015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525467.1|115137_115512_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_158305131.1|115642_115816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041174883.1|115856_116099_+	hypothetical protein	NA	A0A0A7NPW2	Enterobacteria_phage	59.5	6.0e-18
WP_041174884.1|116098_116302_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA	NA
WP_041174885.1|116338_116566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041174886.1|116565_116859_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_013525469.1|116861_117875_+|integrase	site-specific integrase	integrase	P79671	Haemophilus_phage	96.1	2.2e-186
125253:125270	attR	CAGAATTGACCGCACTTT	NA	NA	NA	NA
>prophage 2
NC_014920	Haemophilus influenzae F3031, complete genome	1985832	259012	267905	1985832	tRNA	Streptococcus_phage(16.67%)	10	NA	NA
WP_013525538.1|259012_259828_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	29.2	2.4e-18
WP_013525539.1|259827_260994_+	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_013525540.1|261024_261918_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.1	1.9e-32
WP_005659998.1|262090_262378_+	DUF5339 domain-containing protein	NA	NA	NA	NA	NA
WP_013525541.1|262429_263437_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	26.3	2.8e-08
WP_013525542.1|263444_264059_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_005659992.1|264121_264694_-	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	27.2	7.1e-09
WP_005649034.1|264740_265481_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005686755.1|265640_266117_-	dihydroneopterin triphosphate diphosphatase	NA	A0A248SJK4	Salicola_phage	30.4	6.7e-05
WP_013525543.1|266138_267905_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	23.4	5.6e-12
>prophage 3
NC_014920	Haemophilus influenzae F3031, complete genome	1985832	318595	356625	1985832	tail,plate,tRNA,capsid,terminase	Pseudomonas_phage(15.15%)	52	NA	NA
WP_013525575.1|318595_320455_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.5	1.4e-109
WP_013525576.1|320473_321160_-	DUF2625 domain-containing protein	NA	NA	NA	NA	NA
WP_005662651.1|321210_321735_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_005688927.1|321747_322071_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	45.8	1.3e-23
WP_005654861.1|322128_322509_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	80.6	1.4e-53
WP_013525577.1|322568_323783_-	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	36.0	5.1e-33
WP_013525578.1|323850_324303_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_005691741.1|324355_325081_-|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_013525579.1|325728_326187_-	hypothetical protein	NA	F6MIM0	Haemophilus_phage	55.8	4.9e-45
WP_013525580.1|326183_326786_-	hypothetical protein	NA	Q94MX9	Haemophilus_virus	94.5	5.0e-98
WP_013525581.1|326797_329167_-|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	60.1	9.9e-214
WP_012054979.1|329176_329791_-	DUF2612 domain-containing protein	NA	A0A0N9SSD8	Pseudomonas_phage	37.4	1.0e-21
WP_013525582.1|329799_331236_-|plate	baseplate J/gp47 family protein	plate	A0A0N9SH53	Pseudomonas_phage	28.2	1.4e-45
WP_005643324.1|331228_331594_-	hypothetical protein	NA	A0A1J0MEY0	Pectobacterium_phage	35.4	1.4e-10
WP_013525583.1|331590_332262_-|plate	phage baseplate protein	plate	A0A0M5M1K7	Salmonella_phage	32.6	2.6e-18
WP_013525584.1|332258_333221_-	hypothetical protein	NA	E5AGC0	Erwinia_phage	29.9	5.9e-32
WP_013525585.1|333217_333532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525586.1|333528_334110_-	hypothetical protein	NA	I3PGV3	Xanthomonas_phage	28.4	1.5e-06
WP_013525587.1|334271_334994_+	hypothetical protein	NA	A6XMM0	Bacillus_virus	46.4	5.8e-24
WP_013525588.1|335068_337486_-	tape measure protein	NA	H9EB42	Vibrio_phage	28.0	1.6e-33
WP_005643340.1|337482_337635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525589.1|337670_338153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005643344.1|338152_338578_-	DUF3277 family protein	NA	A0A0A1IUI2	Pseudomonas_phage	36.9	2.6e-16
WP_013525590.1|338623_339697_-	DUF3383 family protein	NA	A0A0N9SJA3	Pseudomonas_phage	41.0	4.8e-59
WP_013525591.1|339683_340193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525592.1|340194_340554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525593.1|340553_341012_-	hypothetical protein	NA	A0A2I7R754	Vibrio_phage	34.5	4.1e-15
WP_013525594.1|341004_341355_-	DUF4054 domain-containing protein	NA	NA	NA	NA	NA
WP_005692571.1|341358_341547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525595.1|341549_342551_-	DUF2184 domain-containing protein	NA	A0A0N9SG07	Pseudomonas_phage	36.2	2.9e-50
WP_013525596.1|342558_342978_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_005692574.1|342990_344064_-	DUF2213 domain-containing protein	NA	E5AGA6	Erwinia_phage	40.2	1.2e-54
WP_041174890.1|344189_345407_-|capsid	minor capsid protein	capsid	A0A2D2W1Z9	Sinorhizobium_phage	38.0	2.6e-24
WP_013525598.1|345387_346704_-	DUF1073 domain-containing protein	NA	A0A2K9V3H1	Faecalibacterium_phage	32.0	1.8e-47
WP_013525599.1|346705_348055_-|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	58.2	5.5e-145
WP_005651145.1|348035_348404_-	LuxR family transcriptional regulator	NA	A0A0R6PHW5	Moraxella_phage	39.3	3.4e-12
WP_005692583.1|348461_348683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012054986.1|348679_350035_-	ParB N-terminal domain-containing protein	NA	A0A0E3U266	Fusobacterium_phage	44.8	1.8e-98
WP_013525600.1|350046_350277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013527467.1|350251_350641_-	DUF2570 domain-containing protein	NA	NA	NA	NA	NA
WP_013525602.1|350637_351042_-	M15 family metallopeptidase	NA	W0LI70	Edwardsiella_phage	68.7	3.9e-46
WP_013525603.1|351028_351355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171034551.1|351365_351527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525604.1|351777_352746_-	helix-turn-helix transcriptional regulator	NA	A0A0M3LPF9	Mannheimia_phage	30.4	2.4e-17
WP_006995067.1|352879_353086_+	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	48.3	8.7e-10
WP_005651123.1|353129_353582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013525605.1|353627_353861_+	helix-turn-helix domain-containing protein	NA	A0A0M3LR73	Mannheimia_phage	60.3	2.3e-14
WP_013525606.1|353862_354645_+	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	45.1	4.3e-41
WP_013525607.1|354629_355271_+	replication P	NA	NA	NA	NA	NA
WP_005633909.1|355267_355492_+	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
WP_005651114.1|355528_355945_+	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	84.7	1.1e-62
WP_013525608.1|356037_356625_+	recombination protein NinG	NA	A0A2I7RAC0	Vibrio_phage	48.5	1.7e-37
>prophage 4
NC_014920	Haemophilus influenzae F3031, complete genome	1985832	359958	451995	1985832	transposase,tail,plate,tRNA,integrase,terminase	Haemophilus_phage(17.39%)	103	369931:369957	446931:446957
WP_013525612.1|359958_360990_+	HNH endonuclease	NA	D0UIK6	Aggregatibacter_phage	82.8	5.2e-42
WP_013525613.1|361080_361818_+	site-specific DNA-methyltransferase	NA	A0A0E3U2R2	Fusobacterium_phage	77.5	5.2e-113
WP_013525614.1|361831_362179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041174891.1|362175_362469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013525615.1|362481_363432_+	recombinase RecT	NA	A0A0M3LNU3	Mannheimia_phage	68.3	1.0e-108
WP_013525616.1|363406_364057_+	hypothetical protein	NA	A0A0M3LP90	Mannheimia_phage	71.6	1.2e-84
WP_013525617.1|364056_364491_+	single-stranded DNA-binding protein	NA	A0A059WRL7	Vibrio_phage	36.2	7.5e-19
WP_013525618.1|364552_365629_+	hypothetical protein	NA	A0A0U3TGV3	Pseudomonas_phage	61.9	7.3e-07
WP_158305132.1|365753_365897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013525619.1|365907_366477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013525620.1|366473_366710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013525621.1|366706_367066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012054998.1|367073_368348_+	DNA cytosine methyltransferase	NA	A0A2I7QRH3	Vibrio_phage	46.9	7.7e-96
WP_005651292.1|368395_368812_+	hypothetical protein	NA	E5E463	Acinetobacter_phage	65.2	1.3e-07
WP_013525622.1|368883_369417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005668271.1|369681_369951_+	hypothetical protein	NA	NA	NA	NA	NA
369931:369957	attL	CCACAACCACCGGAGGAATAAATTATG	NA	NA	NA	NA
WP_013525623.1|369954_370392_+	hypothetical protein	NA	A0A2K9V3W6	Faecalibacterium_phage	37.6	2.0e-24
WP_005641600.1|370733_371759_+|integrase	site-specific integrase	integrase	K7PKD7	Enterobacteria_phage	35.4	7.4e-57
WP_005658075.1|372411_372969_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_013525624.1|373243_374434_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_013525625.1|374818_376180_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_005653606.1|376292_376799_+	DUF2301 domain-containing membrane protein	NA	NA	NA	NA	NA
WP_013525626.1|376848_377856_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
WP_005658066.1|378033_378804_-|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	NA	NA	NA	NA
WP_013525627.1|378803_379913_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_013525628.1|380306_382442_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_005654899.1|388647_389577_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005665596.1|389586_390321_+	azaleucine resistance protein AzlC	NA	NA	NA	NA	NA
WP_013525629.1|390317_390647_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_005632089.1|390749_390983_+	YgjV family protein	NA	NA	NA	NA	NA
WP_013525630.1|391058_392642_-	peptide chain release factor 3	NA	D0R0F5	Streptococcus_phage	26.1	2.6e-29
WP_005649928.1|392820_393609_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_013525631.1|393690_395670_+	exoribonuclease II	NA	NA	NA	NA	NA
WP_041174892.1|395647_396520_+	YadA-like family protein	NA	NA	NA	NA	NA
WP_013525632.1|396752_397394_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_013525633.1|397390_398320_+	5-oxoprolinase/urea amidolyase family protein	NA	NA	NA	NA	NA
WP_005688057.1|398306_399044_+	5-oxoprolinase subunit PxpA	NA	NA	NA	NA	NA
WP_005688055.1|399087_400281_+	divalent metal cation transporter	NA	NA	NA	NA	NA
WP_005688053.1|400351_401686_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	79.4	8.4e-53
WP_005688052.1|401841_402714_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.0	1.1e-50
WP_013525634.1|402879_405228_-	penicillin-binding protein 1B	NA	NA	NA	NA	NA
WP_010869281.1|405234_405588_-	YacL family protein	NA	NA	NA	NA	NA
WP_005670302.1|405589_405934_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	48.6	1.7e-26
WP_005649958.1|406069_406876_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_013525636.1|406969_409561_+	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA	NA
WP_013525637.1|409635_410703_+	UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase	NA	NA	NA	NA	NA
WP_013525638.1|411008_411557_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	40.4	4.5e-29
WP_013525639.1|411627_412668_+	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA	NA
WP_013525640.1|412826_413084_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_013525641.1|413163_414891_+	phosphoenolpyruvate-protein phosphotransferase PtsI	NA	A0A1V0SGR7	Hokovirus	32.6	9.6e-17
WP_005654343.1|414950_415451_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_006995782.1|415634_415802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006995783.1|415951_416317_+	YgiW/YdeI family stress tolerance OB fold protein	NA	NA	NA	NA	NA
WP_013525642.1|416380_417043_+	response regulator	NA	NA	NA	NA	NA
WP_013525643.1|417039_418395_+	two-component system sensor histidine kinase QseC	NA	NA	NA	NA	NA
WP_041174894.1|419242_419506_+	hypothetical protein	NA	F6MIM3	Haemophilus_phage	76.7	7.2e-33
WP_013525645.1|419545_420391_-	hypothetical protein	NA	F6MIM2	Haemophilus_phage	71.7	4.0e-117
WP_041174895.1|420447_420567_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_013525646.1|420742_421243_-	hypothetical protein	NA	F6MIM0	Haemophilus_phage	60.4	8.5e-51
WP_013525647.1|421239_421842_-	hypothetical protein	NA	Q94MX9	Haemophilus_virus	91.0	2.6e-94
WP_013525648.1|421853_423563_-|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	65.9	2.2e-154
WP_005658855.1|423594_424164_-|tail	phage tail protein	tail	A4JWL7	Burkholderia_virus	45.3	4.5e-40
WP_013525649.1|424156_425263_-|plate	baseplate J/gp47 family protein	plate	A4JWL6	Burkholderia_virus	36.2	2.3e-56
WP_013525650.1|425262_425628_-	GPW/gp25 family protein	NA	NA	NA	NA	NA
WP_005658861.1|425682_426291_-|plate	phage baseplate assembly protein V	plate	A0A291LA20	Bordetella_phage	42.1	2.2e-08
WP_013525651.1|426277_427342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016533315.1|427334_427565_-|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	47.8	7.2e-13
WP_013525652.1|427545_428478_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_013525653.1|428477_431069_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	29.6	1.7e-41
WP_041174896.1|431114_431429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080567384.1|431413_431560_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_005640664.1|431543_431828_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_013525654.1|431921_432440_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	45.6	1.1e-37
WP_005661612.1|432450_433836_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	44.3	5.2e-98
WP_005658884.1|433845_434343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005658887.1|434354_434789_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	36.4	4.4e-19
WP_013525655.1|434788_435106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525656.1|435171_436098_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	47.9	1.0e-73
WP_013525657.1|436116_437220_-	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	39.2	1.2e-65
WP_005661604.1|437462_437963_-	phage virion morphogenesis protein	NA	G8GWE3	Rhodobacter_phage	31.5	3.8e-14
WP_041174897.1|438165_438354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525658.1|438540_439818_-	mu gp30-like protein	NA	J9STS2	Pseudomonas_phage	47.6	2.8e-53
WP_013525659.1|439818_441234_-	DUF935 family protein	NA	Q6QIC0	Burkholderia_phage	45.0	1.3e-112
WP_005658905.1|441235_442558_-|terminase	terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	64.2	1.8e-148
WP_005658907.1|442541_443090_-	DUF3486 family protein	NA	Q6QIC2	Burkholderia_phage	40.3	5.9e-29
WP_005658909.1|443099_443402_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	52.0	3.1e-24
WP_005658911.1|443398_443707_-	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	39.4	6.3e-12
WP_013525660.1|443703_444087_-	DUF2681 domain-containing protein	NA	F6MIK2	Haemophilus_phage	52.1	5.4e-05
WP_041174898.1|444083_444314_-	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	69.3	4.4e-18
WP_005658921.1|444401_444545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525661.1|444553_445090_-	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	68.0	7.2e-72
WP_005658925.1|445176_445596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005658927.1|445669_446044_-	transcriptional regulator	NA	Q6QIE8	Burkholderia_phage	46.2	1.9e-23
WP_005658929.1|446047_446536_-	regulatory protein GemA	NA	A0A0C4UQU3	Shigella_phage	31.7	4.8e-14
WP_041174899.1|446645_446933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041174900.1|446936_447167_-	DUF551 domain-containing protein	NA	NA	NA	NA	NA
446931:446957	attR	CATAATTTATTCCTCCGGTGGTTGTGG	NA	NA	NA	NA
WP_013525663.1|447167_447542_-	hypothetical protein	NA	F6MIJ4	Haemophilus_phage	51.2	5.3e-29
WP_041174901.1|447614_447833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171034535.1|447829_447988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041174902.1|447997_448195_-	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013525664.1|448299_448818_-	host-nuclease inhibitor Gam family protein	NA	F6MIJ0	Haemophilus_phage	58.1	5.4e-48
WP_041174903.1|448839_449043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525667.1|449985_451995_-|transposase	Mu transposase C-terminal domain-containing protein	transposase	M4M9R2	Vibrio_phage	35.7	1.8e-99
>prophage 5
NC_014920	Haemophilus influenzae F3031, complete genome	1985832	855519	899494	1985832	tail,plate,holin,capsid,terminase	Haemophilus_phage(46.94%)	60	NA	NA
WP_013525886.1|855519_856398_+|holin	choline transport protein LicB	holin	NA	NA	NA	NA
WP_013525887.1|856394_857096_+	NTP transferase domain-containing protein	NA	NA	NA	NA	NA
WP_013525909.1|857095_857893_+	LicD family protein	NA	A0A1V0SD50	Indivirus	37.4	1.1e-07
WP_013525910.1|858266_858683_-	phage virion morphogenesis protein	NA	B7SDN8	Haemophilus_phage	68.6	4.8e-47
WP_013525911.1|858806_859514_-	hypothetical protein	NA	A0A0M3LSH7	Mannheimia_phage	55.2	9.9e-61
WP_011961987.1|859525_859759_-	DUF935 family protein	NA	B7SDN1	Haemophilus_phage	68.9	2.1e-20
WP_006996123.1|859758_860229_+	hypothetical protein	NA	Q94N00	Haemophilus_virus	39.0	6.6e-21
WP_006996122.1|860283_860442_+	hypothetical protein	NA	A0A0M3LTD8	Mannheimia_phage	81.4	3.4e-14
WP_013525915.1|861950_862442_-	hypothetical protein	NA	F6MIM0	Haemophilus_phage	60.4	3.8e-51
WP_013525647.1|862438_863041_-	hypothetical protein	NA	Q94MX9	Haemophilus_virus	91.0	2.6e-94
WP_013525916.1|863052_865296_-|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	65.8	7.9e-221
WP_005684190.1|865305_865881_-	DUF2612 domain-containing protein	NA	D0UIH4	Aggregatibacter_phage	79.1	3.5e-88
WP_013525917.1|865880_867023_-|plate	baseplate J/gp47 family protein	plate	Q7Y5S4	Haemophilus_phage	87.1	1.6e-185
WP_013525918.1|867065_867584_-	phage antirepressor N-terminal domain-containing protein	NA	A0A0M4REH5	Salmonella_phage	52.0	9.8e-34
WP_013525919.1|867768_868122_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	87.8	4.8e-56
WP_013525920.1|868118_868763_-	hypothetical protein	NA	D0UIH7	Aggregatibacter_phage	79.9	1.2e-94
WP_013525921.1|868759_869632_-	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	86.6	2.7e-140
WP_041174930.1|869646_869826_-	hypothetical protein	NA	D0UIH9	Aggregatibacter_phage	94.9	1.9e-21
WP_013525922.1|869908_870217_-	hypothetical protein	NA	D0UII0	Aggregatibacter_phage	80.4	1.9e-45
WP_013525923.1|870222_870999_-	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	66.1	2.0e-83
WP_013525924.1|871004_873095_-	hypothetical protein	NA	Q7Y5T2	Haemophilus_phage	69.2	6.2e-212
WP_006996369.1|873245_873656_-	hypothetical protein	NA	Q776V6	Haemophilus_phage	70.8	5.9e-50
WP_006996370.1|873655_874087_-	DUF3277 family protein	NA	Q7Y5T4	Haemophilus_phage	93.0	2.9e-71
WP_006996371.1|874096_874255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525926.1|874331_875840_-	DUF3383 domain-containing protein	NA	Q7Y5T5	Haemophilus_phage	86.9	3.5e-249
WP_013525927.1|875844_876207_-	hypothetical protein	NA	Q7Y5T6	Haemophilus_phage	73.9	6.6e-45
WP_013525928.1|876271_876643_-	hypothetical protein	NA	Q776V7	Haemophilus_phage	71.5	1.8e-45
WP_006996375.1|876639_877086_-	hypothetical protein	NA	Q7Y5T8	Haemophilus_phage	72.3	6.7e-55
WP_013525929.1|877086_877449_-	DUF4054 domain-containing protein	NA	Q7Y5T9	Haemophilus_phage	66.4	4.4e-33
WP_006996377.1|877458_878373_-	DUF2184 domain-containing protein	NA	Q7Y5U0	Haemophilus_phage	89.5	1.7e-150
WP_006996378.1|878382_878823_-	hypothetical protein	NA	D0UIJ1	Aggregatibacter_phage	71.1	2.3e-47
WP_041174931.1|878835_879936_-	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	87.0	4.4e-140
WP_006996380.1|879997_880354_-	DUF2513 domain-containing protein	NA	A0A1W6JNL0	Staphylococcus_phage	31.7	7.8e-06
WP_013525931.1|880632_882066_-|capsid	minor capsid protein	capsid	Q7Y5U5	Haemophilus_phage	77.2	1.7e-88
WP_013525932.1|882094_883426_-	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.2	1.5e-211
WP_006996384.1|883427_884771_-|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	53.7	3.1e-124
WP_005693952.1|884757_885273_-|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	40.9	5.6e-21
WP_006996386.1|885570_885918_+	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	56.1	4.4e-22
WP_013525933.1|885919_886201_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	72.2	1.4e-29
WP_041174932.1|886112_886436_-	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	54.2	7.8e-21
WP_013525934.1|886428_887031_-	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	53.4	3.7e-56
WP_013525935.1|886999_887356_-|holin	phage holin, lambda family	holin	NA	NA	NA	NA
WP_005643389.1|887551_887725_-	hypothetical protein	NA	D0UIH9	Aggregatibacter_phage	53.7	8.9e-08
WP_005666916.1|888130_888268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525936.1|888342_889242_-	hypothetical protein	NA	D0UIK6	Aggregatibacter_phage	53.7	1.5e-77
WP_041174933.1|889879_890062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041174934.1|890106_890556_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	38.3	1.8e-23
WP_041174935.1|890587_890770_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_005650528.1|890869_891241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013525938.1|891237_891780_-	recombination protein NinG	NA	D0UIK8	Aggregatibacter_phage	67.2	2.6e-61
WP_013525939.1|891872_892289_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	84.7	4.7e-63
WP_041174936.1|892325_892550_-	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
WP_013525940.1|892546_893188_-	replication P	NA	NA	NA	NA	NA
WP_013525941.1|893926_894595_-	phage antirepressor KilAC domain-containing protein	NA	D0UIL6	Aggregatibacter_phage	53.0	2.4e-56
WP_005656655.1|894642_894939_-	hypothetical protein	NA	Q7Y5W3	Haemophilus_phage	70.4	2.0e-31
WP_041175006.1|894959_895172_-	helix-turn-helix domain-containing protein	NA	Q19UN8	Mannheimia_phage	51.5	8.1e-11
WP_013525942.1|895313_896006_+	helix-turn-helix transcriptional regulator	NA	F1C5C2	Cronobacter_phage	31.2	9.2e-19
WP_013525943.1|896137_897082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041174937.1|898453_898546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013525944.1|898855_899494_+	KilA-N domain-containing protein	NA	D0UIK6	Aggregatibacter_phage	73.7	1.1e-42
>prophage 6
NC_014920	Haemophilus influenzae F3031, complete genome	1985832	904470	911373	1985832	integrase	Aggregatibacter_phage(42.86%)	11	905442:905457	922420:922435
WP_013525950.1|904470_905154_+	KilA-N domain-containing protein	NA	D0UIK6	Aggregatibacter_phage	81.9	2.5e-45
WP_013525951.1|905362_906007_+	hypothetical protein	NA	A0A0M3LP90	Mannheimia_phage	71.4	1.5e-84
905442:905457	attL	CAGCCAAAAGTGCGGT	NA	NA	NA	NA
WP_013525952.1|906006_906441_+	single-stranded DNA-binding protein	NA	L7TJL2	Pseudomonas_virus	35.1	1.3e-18
WP_005652248.1|906500_906680_-	hypothetical protein	NA	Q19US2	Mannheimia_phage	62.1	1.8e-11
WP_041174939.1|907000_907237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013525953.1|907233_907584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005684834.1|907727_908168_+	DUF4065 domain-containing protein	NA	D0UIM3	Aggregatibacter_phage	65.8	1.9e-49
WP_013525954.1|908154_908508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013525955.1|908838_909690_+	ORF6C domain-containing protein	NA	D0UIK6	Aggregatibacter_phage	42.1	1.1e-53
WP_032826372.1|909928_910129_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_013525956.1|910125_911373_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	36.9	1.1e-73
922420:922435	attR	ACCGCACTTTTGGCTG	NA	NA	NA	NA
>prophage 7
NC_014920	Haemophilus influenzae F3031, complete genome	1985832	1021124	1029638	1985832		Bacillus_virus(33.33%)	8	NA	NA
WP_013526026.1|1021124_1021808_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.2	3.9e-54
WP_013526027.1|1021800_1022226_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.0	1.5e-19
WP_005686506.1|1022226_1022862_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A218M2Y8	Acidovorax_phage	35.2	2.9e-11
WP_041175009.1|1023476_1025657_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	8.7e-116
WP_005694256.1|1025746_1026748_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_013526030.1|1026762_1027650_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_013526031.1|1027659_1028652_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
WP_005663823.1|1028654_1029638_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.3	3.2e-17
>prophage 8
NC_014920	Haemophilus influenzae F3031, complete genome	1985832	1249276	1264996	1985832	capsid,head,protease,terminase	Haemophilus_phage(58.82%)	26	NA	NA
WP_013526153.1|1249276_1249708_-	DUF1320 domain-containing protein	NA	B7SDP4	Haemophilus_phage	61.6	1.2e-37
WP_013526154.1|1249717_1250053_-	hypothetical protein	NA	B7SDP3	Haemophilus_phage	55.4	4.4e-19
WP_013526155.1|1250088_1251009_-|head	Mu-like prophage major head subunit gpT family protein	head	A0A0M3LQ11	Mannheimia_phage	62.9	1.0e-110
WP_086935082.1|1251008_1251998_-|protease	phage protease	protease	A0A0M3LPA7	Mannheimia_phage	45.6	5.8e-67
WP_013526157.1|1251885_1252239_-	phage virion morphogenesis protein	NA	B7SDN8	Haemophilus_phage	67.9	3.1e-23
WP_013526158.1|1252381_1253698_-|capsid	minor capsid protein	capsid	A0A0M3LSH7	Mannheimia_phage	67.7	2.0e-168
WP_013526159.1|1255382_1257032_-|terminase	phage terminase large subunit	terminase	B7SDN0	Haemophilus_phage	79.7	1.1e-248
WP_013526160.1|1257181_1257682_-	DUF1804 family protein	NA	F6MIK6	Haemophilus_phage	51.8	4.1e-45
WP_005661915.1|1257683_1257950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005684166.1|1257949_1258207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013526161.1|1258330_1258588_-	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
WP_041174960.1|1258587_1258878_-	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	61.4	3.3e-15
WP_013526163.1|1259031_1259535_-	glycoside hydrolase family 108 protein	NA	A0A0M3LSH2	Mannheimia_phage	63.1	4.9e-54
WP_013526164.1|1259615_1260044_-	hypothetical protein	NA	F6MIJ8	Haemophilus_phage	42.3	2.5e-27
WP_013526165.1|1260155_1260572_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0M3LQH7	Mannheimia_phage	75.2	3.8e-52
WP_041174961.1|1260626_1260803_-	type II toxin-antitoxin system HicA family toxin	NA	A0A0M3LQ86	Mannheimia_phage	87.9	5.9e-23
WP_005641522.1|1260928_1261147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013526166.1|1261157_1261799_-	antA/AntB antirepressor family protein	NA	Q7Y5W2	Haemophilus_phage	41.8	3.7e-22
WP_006996626.1|1262335_1262539_-	KilA-N domain-containing protein	NA	NA	NA	NA	NA
WP_013526167.1|1262565_1262964_-	regulatory protein GemA	NA	F6MIJ6	Haemophilus_phage	43.7	5.3e-19
WP_006996624.1|1263204_1263453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006996623.1|1263457_1263631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171034544.1|1263627_1263792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006996621.1|1263802_1264000_-	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013526168.1|1264186_1264804_-	DUF3164 family protein	NA	A0A0M3LQ92	Mannheimia_phage	58.8	6.8e-66
WP_005647090.1|1264804_1264996_-	HTH domain-containing protein	NA	F6MII8	Haemophilus_phage	57.6	9.5e-11
