The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_007347	Cupriavidus pinatubonensis JMP134 chromosome 1, complete sequence	3806533	2609136	2650612	3806533	integrase,capsid,terminase	Burkholderia_phage(41.03%)	53	2599574:2599593	2615721:2615740
2599574:2599593	attL	GAACAGGCGGTCGCGCTCGG	NA	NA	NA	NA
WP_011298516.1|2609136_2610351_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	44.5	2.4e-86
WP_049796423.1|2610347_2610899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011298518.1|2610914_2611481_-	DUF1643 domain-containing protein	NA	A0A142KC71	Gordonia_phage	47.6	1.1e-22
WP_011298519.1|2611477_2612146_-	hypothetical protein	NA	H2BDG4	Pseudomonas_virus	48.1	1.5e-42
WP_041679666.1|2612144_2612618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011298520.1|2612650_2614441_-	DNA cytosine methyltransferase	NA	L7TH64	Pseudomonas_virus	63.0	7.8e-187
WP_011298521.1|2614437_2614932_-	hypothetical protein	NA	A9YX19	Burkholderia_phage	68.6	2.1e-54
WP_011298522.1|2614928_2615189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011298523.1|2615188_2615392_-	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
WP_011298524.1|2615388_2615571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011298525.1|2615570_2617310_-	AAA family ATPase	NA	H2BD46	Pseudomonas_phage	38.0	6.0e-83
2615721:2615740	attR	GAACAGGCGGTCGCGCTCGG	NA	NA	NA	NA
WP_011298526.1|2617316_2618195_-	cell division protein FtsK	NA	J7I0T4	Pseudomonas_phage	35.5	6.6e-30
WP_011298527.1|2618310_2619465_-	hypothetical protein	NA	J7HXB6	Pseudomonas_phage	50.2	1.4e-64
WP_041679667.1|2619506_2620301_-	nuclease	NA	J7HXJ4	Pseudomonas_phage	47.8	6.1e-59
WP_011298529.1|2620577_2620877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011298530.1|2620887_2621172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011298531.1|2621369_2622635_-	helix-turn-helix transcriptional regulator	NA	B6SCU0	Bacteriophage	49.3	3.5e-32
WP_011298532.1|2622747_2622990_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_011298533.1|2623256_2623523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086004446.1|2623582_2624719_+	DUF1376 domain-containing protein	NA	H2BD69	Pseudomonas_phage	43.3	1.3e-25
WP_011298535.1|2624715_2625189_+	RusA family crossover junction endodeoxyribonuclease	NA	A9YWY9	Burkholderia_phage	59.4	1.1e-44
WP_011298536.1|2625214_2625823_+	hypothetical protein	NA	Q3HR05	Burkholderia_phage	53.4	1.8e-47
WP_166487050.1|2626150_2627506_+	chromosome partitioning protein ParB	NA	R4THK0	Halovirus	41.4	2.2e-80
WP_011298538.1|2627511_2627922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011298539.1|2627872_2629423_+|terminase	phage terminase large subunit	terminase	W8VT11	Pseudomonas_phage	46.1	4.9e-113
WP_011298540.1|2629419_2630991_+	DUF1073 domain-containing protein	NA	A0A0P0I486	Acinetobacter_phage	62.7	3.9e-158
WP_166487013.1|2630941_2631574_+|capsid	minor capsid protein	capsid	A9YWZ8	Burkholderia_phage	69.3	2.0e-76
WP_011298542.1|2631575_2631938_+	hypothetical protein	NA	G8GWD9	Rhodobacter_phage	43.5	7.6e-17
WP_011298543.1|2631939_2633271_+	DUF2213 domain-containing protein	NA	A0A0P0IRE1	Acinetobacter_phage	46.7	1.9e-65
WP_011298544.1|2633283_2633778_+	hypothetical protein	NA	A0A0P0I8F3	Acinetobacter_phage	54.9	2.0e-36
WP_011298545.1|2633791_2634829_+	DUF2184 domain-containing protein	NA	A0A0N7IRF2	Acinetobacter_phage	66.5	1.6e-123
WP_011298546.1|2634841_2635246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011298547.1|2635285_2635669_+	DUF4054 domain-containing protein	NA	A9YX25	Burkholderia_phage	65.9	2.5e-42
WP_011298548.1|2635694_2636174_+	hypothetical protein	NA	A9YX26	Burkholderia_phage	68.6	2.2e-51
WP_011298549.1|2636177_2636549_+	hypothetical protein	NA	A9YX28	Burkholderia_phage	91.1	1.2e-60
WP_011298550.1|2636552_2637143_+	hypothetical protein	NA	A9YX29	Burkholderia_phage	75.1	6.3e-77
WP_011298551.1|2637213_2638689_+	DUF3383 domain-containing protein	NA	A0A0P0I492	Acinetobacter_phage	44.5	4.0e-104
WP_011298552.1|2638700_2639144_+	DUF3277 family protein	NA	A0A0M5M1K6	Salmonella_phage	51.0	2.1e-37
WP_011298553.1|2639146_2639593_+	hypothetical protein	NA	A0A0N7IRF3	Acinetobacter_phage	40.5	1.4e-20
WP_084791935.1|2639589_2639778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166487051.1|2640859_2641465_+	hypothetical protein	NA	Q4L1H3	Burkholderia_phage	34.3	2.4e-15
WP_011298555.1|2641461_2642040_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	39.3	4.3e-22
WP_011298556.1|2642039_2642357_+	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	40.4	1.8e-14
WP_011298557.1|2642353_2643322_+	hypothetical protein	NA	A9YX04	Burkholderia_phage	84.5	7.8e-141
WP_049796471.1|2643318_2643690_-	hypothetical protein	NA	A9YX05	Burkholderia_phage	66.4	2.3e-40
WP_011298559.1|2643694_2644450_+	hypothetical protein	NA	A9YX06	Burkholderia_phage	76.5	1.5e-102
WP_011298560.1|2644458_2644809_+	hypothetical protein	NA	A9YX11	Burkholderia_phage	76.7	7.3e-41
WP_011298561.1|2644808_2645990_+	hypothetical protein	NA	A9YX12	Burkholderia_phage	78.4	3.1e-168
WP_011298562.1|2645991_2646654_+	DUF2612 domain-containing protein	NA	A9YX13	Burkholderia_phage	75.0	2.8e-97
WP_011298563.1|2646663_2647710_+	hypothetical protein	NA	A9YX14	Burkholderia_phage	51.0	1.2e-22
WP_011298564.1|2647709_2647946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041679668.1|2648004_2649639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011298567.1|2650090_2650612_+	glycoside hydrolase family 104 protein	NA	S4TUB1	Salmonella_phage	62.8	3.1e-51
>prophage 2
NC_007347	Cupriavidus pinatubonensis JMP134 chromosome 1, complete sequence	3806533	3574909	3580917	3806533		uncultured_Caudovirales_phage(33.33%)	9	NA	NA
WP_011299392.1|3574909_3575497_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	32.7	6.8e-15
WP_011299393.1|3575580_3575964_-	YraN family protein	NA	NA	NA	NA	NA
WP_011299394.1|3575975_3576875_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	41.7	1.0e-33
WP_041680082.1|3576947_3577613_-	septal ring lytic transglycosylase RlpA family protein	NA	H2BCY4	Synechococcus_phage	53.2	1.5e-18
WP_011299396.1|3577951_3578602_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_011299397.1|3578627_3579275_+	hypothetical protein	NA	A0A2L0UZL4	Agrobacterium_phage	39.5	2.7e-33
WP_041679736.1|3579459_3579690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011299399.1|3579831_3580191_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	43.6	1.8e-18
WP_041679737.1|3580332_3580917_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	42.3	1.8e-23
>prophage 1
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	0	9489	634917		Acinetobacter_phage(50.0%)	7	NA	NA
WP_011295671.1|313_1129_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_011295672.1|1133_2687_-	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	25.8	1.7e-28
WP_011295673.1|2679_3252_-	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	41.3	1.1e-14
WP_011295674.1|3248_4064_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_011295675.1|4060_7099_-	molybdopterin-dependent oxidoreductase	NA	A0A0P0I429	Acinetobacter_phage	25.1	2.5e-36
WP_011295676.1|7374_8283_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011295677.1|8481_9489_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.6	5.8e-14
>prophage 2
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	15044	26528	634917		Oenococcus_phage(20.0%)	9	NA	NA
WP_011295682.1|15044_16193_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	29.1	5.4e-32
WP_011295683.1|16189_17203_-	hydroxyacid dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	28.2	1.9e-17
WP_011295684.1|17199_18276_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_011295685.1|18297_19182_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	31.7	1.8e-19
WP_011295686.1|19211_20672_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_166487214.1|20709_21639_-	D-glycerate dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	22.5	1.6e-13
WP_086004475.1|21945_22725_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_166487186.1|23143_23377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011295690.1|23834_26528_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	34.6	7.9e-159
>prophage 3
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	33817	36646	634917	protease	Cronobacter_phage(100.0%)	1	NA	NA
WP_011295699.1|33817_36646_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.3	1.4e-121
>prophage 4
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	52030	120467	634917	integrase,transposase	Staphylococcus_phage(15.38%)	54	54504:54519	128001:128016
WP_011295719.1|52030_53476_+|transposase	IS1182 family transposase	transposase	NA	NA	NA	NA
WP_086004473.1|53873_55008_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	27.0	2.7e-12
54504:54519	attL	AGATCGATCGCGCCAA	NA	NA	NA	NA
WP_011295722.1|55027_56707_-	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	28.6	1.4e-28
WP_041680704.1|56935_57664_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	32.5	6.2e-26
WP_011295724.1|57707_59078_+	MFS transporter	NA	NA	NA	NA	NA
WP_011295725.1|59097_59856_+	SDR family NAD(P)-dependent oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	32.2	7.5e-06
WP_011295726.1|59863_61066_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_011295727.1|61123_61810_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_011295728.1|62190_62841_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011295729.1|63165_64884_+	tannase/feruloyl esterase family alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_166487188.1|65280_66057_-	FCD domain-containing protein	NA	NA	NA	NA	NA
WP_011295731.1|66016_66778_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_011295732.1|66806_67781_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_011295733.1|67797_68958_+	CoA transferase	NA	NA	NA	NA	NA
WP_011295734.1|69588_70605_-	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_011295735.1|70658_71690_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011295736.1|71701_72589_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_041680705.1|72592_73300_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.1	1.4e-11
WP_011295738.1|73332_74103_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.8	6.8e-15
WP_011295739.1|74325_75555_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011295740.1|75588_76470_-	3-hydroxyisobutyrate dehydrogenase	NA	A0A077SLF7	Escherichia_phage	29.8	3.1e-27
WP_011295741.1|76508_77492_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_011295742.1|77559_79065_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_011295743.1|79219_80143_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_166487183.1|81239_81635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049796578.1|81730_82384_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_011295745.1|82544_83171_-|integrase	tyrosine-type recombinase/integrase	integrase	E2ELN7	Clostridium_phage	29.3	5.4e-10
WP_011295746.1|83641_84007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041680706.1|84818_86189_-	MHS family MFS transporter	NA	Q6JIH2	Burkholderia_virus	33.8	3.5e-46
WP_049796579.1|86423_86897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166487184.1|87299_87701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011295750.1|89499_90828_-	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_011295751.1|90943_96595_-	type I secretion C-terminal target domain-containing protein	NA	NA	NA	NA	NA
WP_041680708.1|96679_98068_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011295753.1|98051_100247_-	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	27.6	1.6e-32
WP_166487189.1|101007_101283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011295754.1|101334_102129_+	DUF1016 family protein	NA	Q9JMP5	Wolbachia_phage	54.4	4.6e-75
WP_011295755.1|102480_103581_+|transposase	IS5-like element ISRme16 family transposase	transposase	NA	NA	NA	NA
WP_011295756.1|103727_104705_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_011295757.1|104794_105481_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_011295758.1|105529_106513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011295759.1|106980_108024_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_011295760.1|108078_108969_-	tryptophan 2,3-dioxygenase	NA	NA	NA	NA	NA
WP_166487190.1|109108_110401_-	amidase	NA	NA	NA	NA	NA
WP_011295762.1|110508_111627_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_011295763.1|111745_112657_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011295764.1|112841_113528_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	34.2	2.7e-23
WP_011295765.1|113640_114591_+	ring-cleaving dioxygenase	NA	NA	NA	NA	NA
WP_011295766.1|114612_115239_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA	NA
WP_041680710.1|115374_115617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_140952663.1|116613_116904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011295769.1|117740_118946_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	57.6	1.0e-121
WP_041680712.1|118983_119418_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_041680713.1|119555_120467_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
128001:128016	attR	TTGGCGCGATCGATCT	NA	NA	NA	NA
>prophage 5
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	140246	148977	634917		Vibrio_phage(25.0%)	7	NA	NA
WP_011295787.1|140246_142121_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	36.0	3.1e-37
WP_011295788.1|142227_142431_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	70.1	7.0e-20
WP_041680721.1|142771_143143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011295789.1|143638_144346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011295790.1|145346_147362_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	32.1	1.8e-14
WP_041680723.1|147439_147646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011295791.1|148233_148977_-	acetoacetyl-CoA reductase	NA	A0A0K0KVL6	Prochlorococcus_phage	27.2	6.0e-08
>prophage 6
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	155889	165413	634917	transposase	Bacillus_virus(33.33%)	7	NA	NA
WP_011295798.1|155889_159219_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	34.6	8.6e-22
WP_011295799.1|159265_159904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_084792064.1|160441_160711_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_011295800.1|161089_161293_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	71.6	1.8e-20
WP_166487192.1|161882_162047_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_166487193.1|162155_162689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011295801.1|163274_165413_+	glycosyltransferase	NA	M1HZF6	Acanthocystis_turfacea_Chlorella_virus	32.8	1.8e-36
>prophage 7
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	174944	180421	634917		Trichoplusia_ni_ascovirus(33.33%)	7	NA	NA
WP_011295807.1|174944_175709_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	33.2	3.8e-18
WP_011295808.1|175874_176663_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_011295809.1|176691_177588_-	alpha/beta hydrolase	NA	A2RQC8	Archaeal_BJ1_virus	29.2	1.6e-15
WP_011295810.1|177745_178366_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_011295811.1|178593_179007_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_011295812.1|179070_179481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011295813.1|179527_180421_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	26.8	8.8e-14
>prophage 8
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	202987	204667	634917		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011295833.1|202987_204667_+	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	26.1	7.1e-33
>prophage 9
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	220291	223680	634917		Paramecium_bursaria_Chlorella_virus(50.0%)	3	NA	NA
WP_011295848.1|220291_221563_+	DUF1254 domain-containing protein	NA	M1IA53	Paramecium_bursaria_Chlorella_virus	27.2	1.2e-29
WP_011295849.1|221608_222589_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_011295850.1|222648_223680_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	25.5	1.6e-14
>prophage 10
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	233333	234116	634917		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_011295859.1|233333_234116_-	(S)-sulfopropanediol 2-dehydrogenase HpsO	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.7	1.8e-15
>prophage 11
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	240369	241614	634917		Tupanvirus(100.0%)	1	NA	NA
WP_011295865.1|240369_241614_+	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	30.6	4.9e-31
>prophage 12
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	250431	252880	634917		Hirudovirus(50.0%)	2	NA	NA
WP_011295875.1|250431_251199_-	glucose 1-dehydrogenase	NA	V5L4T3	Hirudovirus	33.6	1.2e-08
WP_011295876.1|251203_252880_-	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	26.3	2.4e-33
>prophage 13
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	269968	270877	634917		Lactobacillus_phage(100.0%)	1	NA	NA
WP_011295889.1|269968_270877_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.4	1.5e-08
>prophage 14
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	277137	281793	634917		Streptococcus_phage(50.0%)	4	NA	NA
WP_011295897.1|277137_278547_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.6	9.0e-13
WP_011295898.1|278728_279388_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_011295899.1|279440_280163_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_011295900.1|280644_281793_-	CapA family protein	NA	S4VS02	Pandoravirus	55.6	8.4e-110
>prophage 15
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	301991	302249	634917		Acidovorax_phage(100.0%)	1	NA	NA
WP_049796588.1|301991_302249_+	recombination-associated protein RdgC	NA	A0A218M310	Acidovorax_phage	43.9	3.6e-05
>prophage 16
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	307023	309203	634917		Ochrobactrum_phage(50.0%)	2	NA	NA
WP_011295919.1|307023_308235_+	AAA family ATPase	NA	A0A240F4U1	Ochrobactrum_phage	28.2	8.5e-28
WP_011295920.1|308231_309203_+	ParB/RepB/Spo0J family partition protein	NA	S5VSZ7	Leptospira_phage	34.2	1.2e-13
>prophage 17
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	328516	330064	634917		Catovirus(100.0%)	1	NA	NA
WP_041680757.1|328516_330064_+	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	25.6	1.5e-16
>prophage 18
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	335886	340596	634917	transposase	Leptospira_phage(50.0%)	2	NA	NA
WP_011295940.1|335886_337485_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	36.8	4.3e-80
WP_011295941.1|338871_340596_-	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	27.9	1.1e-25
>prophage 19
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	349431	357432	634917		Bathycoccus_sp._RCC1105_virus(33.33%)	6	NA	NA
WP_011295949.1|349431_351372_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5ESM9	Bathycoccus_sp._RCC1105_virus	46.7	3.2e-109
WP_084792046.1|352270_352579_-	YHS domain-containing protein	NA	NA	NA	NA	NA
WP_041680765.1|352594_352816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049796613.1|352812_355197_-	cadmium-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	38.3	3.4e-97
WP_011295951.1|355408_356593_-	methionine adenosyltransferase	NA	NA	NA	NA	NA
WP_041680766.1|356811_357432_+	LemA family protein	NA	A0A1X9IGG1	Lactococcus_phage	35.0	3.6e-06
>prophage 20
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	374134	375632	634917		Planktothrix_phage(50.0%)	2	NA	NA
WP_041680846.1|374134_374890_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	28.3	6.3e-13
WP_011295966.1|374879_375632_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.5	2.1e-13
>prophage 21
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	389763	390657	634917		Klosneuvirus(100.0%)	1	NA	NA
WP_011295977.1|389763_390657_+	3-keto-5-aminohexanoate cleavage protein	NA	A0A1V0SL81	Klosneuvirus	27.9	8.5e-25
>prophage 22
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	397513	406231	634917	transposase	Pandoravirus(25.0%)	8	NA	NA
WP_011295983.1|397513_398503_+	alpha/beta hydrolase	NA	S4W4Z4	Pandoravirus	30.9	3.0e-15
WP_011295984.1|398542_399388_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_011295985.1|399449_400406_+	metapyrocatechase 2	NA	NA	NA	NA	NA
WP_011295986.1|401188_402115_-	fasciclin domain-containing protein	NA	A0A2I2L5V0	Orpheovirus	32.4	2.7e-05
WP_011295987.1|402365_402968_-	lipocalin	NA	A0A1W6JNX6	Morganella_phage	44.4	9.4e-36
WP_011295988.1|402986_403961_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_049796591.1|404074_404545_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_166487204.1|404575_406231_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	46.5	1.7e-10
>prophage 23
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	414911	415859	634917		Klosneuvirus(100.0%)	1	NA	NA
WP_011295996.1|414911_415859_+	hydroxymethylglutaryl-CoA lyase	NA	A0A1V0SKU2	Klosneuvirus	27.2	3.1e-17
>prophage 24
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	436458	437968	634917		Staphylococcus_phage(100.0%)	2	NA	NA
WP_011296013.1|436458_437235_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.3	6.2e-16
WP_011296014.1|437248_437968_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	7.3e-11
>prophage 25
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	444322	447948	634917		Mycobacterium_phage(50.0%)	2	NA	NA
WP_011296021.1|444322_445666_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	24.4	1.3e-08
WP_011296022.1|447198_447948_+	3-oxoacyl-ACP reductase FabG	NA	A0A0N9R355	Chrysochromulina_ericina_virus	26.2	2.9e-10
>prophage 26
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	452394	453123	634917		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_011296027.1|452394_453123_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.5	9.0e-09
>prophage 27
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	468653	469571	634917		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_011296041.1|468653_469571_+	SDR family NAD(P)-dependent oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	25.7	6.5e-12
>prophage 28
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	473945	474665	634917		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_049796615.1|473945_474665_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	29.6	1.2e-18
>prophage 29
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	496589	502892	634917		Tupanvirus(25.0%)	7	NA	NA
WP_011296066.1|496589_497693_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	28.4	1.5e-10
WP_011296067.1|497738_498950_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011296068.1|498960_499266_-	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA	NA
WP_011296069.1|499302_500616_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_041680880.1|500644_501409_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	30.0	2.5e-09
WP_011296071.1|501451_502147_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	8.1e-15
WP_011296072.1|502133_502892_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	26.0	1.6e-11
>prophage 30
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	506149	507367	634917		unidentified_phage(100.0%)	1	NA	NA
WP_011296076.1|506149_507367_+	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	39.0	8.0e-34
>prophage 31
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	512464	514069	634917	transposase	Leptospira_phage(100.0%)	1	NA	NA
WP_041680776.1|512464_514069_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	34.8	7.2e-67
>prophage 32
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	523906	524953	634917		Wolbachia_phage(100.0%)	1	NA	NA
WP_011296094.1|523906_524953_+	DUF1016 domain-containing protein	NA	Q9JMP5	Wolbachia_phage	50.9	8.8e-98
>prophage 33
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	528309	529638	634917		Burkholderia_virus(100.0%)	1	NA	NA
WP_011296099.1|528309_529638_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	35.7	7.5e-62
>prophage 34
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	541788	542580	634917		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_011296110.1|541788_542580_+	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.8	4.4e-17
>prophage 35
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	551783	553400	634917	holin	Catovirus(100.0%)	1	NA	NA
WP_049796617.1|551783_553400_-|holin	glucose-methanol-choline oxidoreductase	holin	A0A1V0S9M4	Catovirus	30.0	9.8e-56
>prophage 36
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	559903	561499	634917	transposase	Leptospira_phage(100.0%)	1	NA	NA
WP_011296123.1|559903_561499_+|transposase	IS66 family transposase	transposase	S5VLC8	Leptospira_phage	32.6	1.7e-39
>prophage 37
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	570300	570714	634917		Pandoravirus(100.0%)	1	NA	NA
WP_011296130.1|570300_570714_+	RidA family protein	NA	S4VVW6	Pandoravirus	38.3	3.5e-10
>prophage 38
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	579285	580839	634917		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011296137.1|579285_580839_+	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	25.2	7.0e-35
>prophage 39
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	591292	594749	634917		Trichoplusia_ni_ascovirus(66.67%)	4	NA	NA
WP_011296146.1|591292_592069_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.0	1.8e-15
WP_011296147.1|592136_592877_+	3-oxoacyl-ACP reductase FabG	NA	W8CYX9	Bacillus_phage	41.8	1.1e-09
WP_011296148.1|592876_593908_+	phosphotransferase	NA	NA	NA	NA	NA
WP_011296149.1|593984_594749_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.0	1.9e-17
>prophage 40
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	598388	599654	634917		Planktothrix_phage(100.0%)	1	NA	NA
WP_166487224.1|598388_599654_+	peptidoglycan DD-metalloendopeptidase family protein	NA	G9BW84	Planktothrix_phage	41.8	9.8e-19
>prophage 41
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	605248	610343	634917	transposase	Ralstonia_virus(50.0%)	3	NA	NA
WP_011295769.1|605248_606454_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	57.6	1.0e-121
WP_166487213.1|606545_607598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011296159.1|609125_610343_+	AAA family ATPase	NA	A0A125SJ49	Acidianus_tailed_spindle_virus	32.0	5.9e-13
>prophage 42
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	615971	617627	634917		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011296165.1|615971_617627_-	acyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	29.2	1.1e-30
>prophage 43
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	623324	624203	634917		Lactobacillus_phage(100.0%)	1	NA	NA
WP_041680795.1|623324_624203_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.9	7.8e-07
>prophage 44
NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634917	629078	630565	634917		Staphylococcus_phage(50.0%)	2	NA	NA
WP_011296176.1|629078_629783_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	1.2e-10
WP_041680897.1|629785_630565_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.9	3.9e-10
