assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000203895.1_ASM20389v1	NC_008686	Paracoccus denitrificans PD1222 chromosome 1, complete sequence	1	551212-551697	1	CRT	no		csa3,WYL,cas3,DEDDh	Orphan	CNCAGGGAGGAGGAGNGN	18	1	2	551230-551249|551230-551249	NC_008686.1_2096737-2096756|NC_008688.1_204939-204920	NA	11	11	Orphan	csa3,WYL,cas3,DEDDh	NA|109aa|up_9|NC_008686.1_544122_544449_+,NA|54aa|up_7|NC_008686.1_545428_545590_+,NA	NA|109aa|up_9|NC_008686.1_544122_544449_+	NA	NA|260aa|up_8|NC_008686.1_544519_545299_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|54aa|up_7|NC_008686.1_545428_545590_+	NA	NA|278aa|up_6|NC_008686.1_545815_546649_+	pfam09347, DUF1989, Domain of unknown function (DUF1989)	NA|231aa|up_5|NC_008686.1_546645_547338_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|96aa|up_4|NC_008686.1_547469_547757_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|494aa|up_3|NC_008686.1_547753_549235_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|175aa|up_2|NC_008686.1_549258_549783_+	pfam13388, DUF4106, Protein of unknown function (DUF4106)	NA|209aa|up_1|NC_008686.1_549779_550406_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|258aa|up_0|NC_008686.1_550393_551167_-	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|77aa|down_0|NC_008686.1_551715_551946_-	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown]	NA|368aa|down_1|NC_008686.1_552276_553380_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|170aa|down_2|NC_008686.1_554020_554530_+	PRK00326, PRK00326, transcriptional regulator MraZ	NA|323aa|down_3|NC_008686.1_554531_555500_+	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA|129aa|down_4|NC_008686.1_555496_555883_+	COG5462, COG5462, Predicted secreted (periplasmic) protein [Function unknown]	NA|602aa|down_5|NC_008686.1_555879_557685_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|490aa|down_6|NC_008686.1_557714_559184_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|462aa|down_7|NC_008686.1_559180_560566_+	PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional	NA|361aa|down_8|NC_008686.1_560565_561648_+	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|467aa|down_9|NC_008686.1_561730_563131_+	PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
GCF_000203895.1_ASM20389v1	NC_008686	Paracoccus denitrificans PD1222 chromosome 1, complete sequence	2	718091-718185	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh	Orphan	GTGTCGAAGATCCTGAAGTGATCCGTCAGG	30	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh	NA,NA|304aa|down_5|NC_008686.1_723026_723938_+	NA|328aa|up_9|NC_008686.1_705952_706936_+	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily	NA|283aa|up_8|NC_008686.1_706916_707765_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|188aa|up_7|NC_008686.1_707761_708325_-	PRK11267, PRK11267, biopolymer transport protein ExbD; Provisional	NA|411aa|up_6|NC_008686.1_708328_709561_-	TIGR02797, Biopolymer_transport_protein_ExbB, tonB-system energizer ExbB	NA|346aa|up_5|NC_008686.1_709714_710752_-	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|391aa|up_4|NC_008686.1_710812_711985_-	cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family	NA|580aa|up_3|NC_008686.1_712245_713985_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|239aa|up_2|NC_008686.1_713984_714701_+	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only]	NA|364aa|up_1|NC_008686.1_714697_715789_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|316aa|up_0|NC_008686.1_715779_716727_-	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|297aa|down_0|NC_008686.1_718357_719248_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_008686.1_719299_719692_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|138aa|down_2|NC_008686.1_719688_720102_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|218aa|down_3|NC_008686.1_720337_720991_+	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others	NA|614aa|down_4|NC_008686.1_721048_722890_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|304aa|down_5|NC_008686.1_723026_723938_+	NA	NA|82aa|down_6|NC_008686.1_723962_724208_+	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|180aa|down_7|NC_008686.1_724403_724943_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|151aa|down_8|NC_008686.1_725042_725495_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|234aa|down_9|NC_008686.1_725498_726200_+	PRK05424, rplA, 50S ribosomal protein L1; Validated
GCF_000203895.1_ASM20389v1	NC_008686	Paracoccus denitrificans PD1222 chromosome 1, complete sequence	3	743527-743621	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh	Orphan	GTGTCGAAGATCCTGAAGTGATCCGTCAGG	30	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh	NA|104aa|up_8|NC_008686.1_732031_732343_+,NA|57aa|up_5|NC_008686.1_737159_737330_-,NA|267aa|down_0|NC_008686.1_743730_744531_-	NA|1383aa|up_9|NC_008686.1_727880_732029_+	PRK09603, PRK09603, DNA-directed RNA polymerase subunit beta/beta'	NA|104aa|up_8|NC_008686.1_732031_732343_+	NA	NA|1403aa|up_7|NC_008686.1_732339_736548_+	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|92aa|up_6|NC_008686.1_736779_737055_+	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|57aa|up_5|NC_008686.1_737159_737330_-	NA	NA|280aa|up_4|NC_008686.1_737316_738156_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|280aa|up_3|NC_008686.1_738155_738995_+	pfam11316, Rhamno_transf, Putative rhamnosyl transferase	NA|124aa|up_2|NC_008686.1_739288_739660_+	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|157aa|up_1|NC_008686.1_739672_740143_+	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|708aa|up_0|NC_008686.1_740161_742285_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|267aa|down_0|NC_008686.1_743730_744531_-	NA	NA|103aa|down_1|NC_008686.1_744794_745103_+	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|246aa|down_2|NC_008686.1_745113_745851_+	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|207aa|down_3|NC_008686.1_745850_746471_+	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|99aa|down_4|NC_008686.1_746467_746764_+	PRK05738, rplW, 50S ribosomal protein L23; Reviewed	NA|280aa|down_5|NC_008686.1_746859_747699_+	PRK09374, rplB, 50S ribosomal protein L2; Validated	NA|93aa|down_6|NC_008686.1_747702_747981_+	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed	NA|127aa|down_7|NC_008686.1_747986_748367_+	PRK00565, rplV, 50S ribosomal protein L22; Reviewed	NA|241aa|down_8|NC_008686.1_748366_749089_+	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed	NA|138aa|down_9|NC_008686.1_749101_749515_+	PRK09203, rplP, 50S ribosomal protein L16; Reviewed
GCF_000203895.1_ASM20389v1	NC_008686	Paracoccus denitrificans PD1222 chromosome 1, complete sequence	4	2425977-2426406	1,3,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,WYL,cas3,DEDDh	Orphan	GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC,GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC,GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	32,32,32	1	1	2426141-2426174	NC_008687.1_758492-758525	I-C:I-C:I-C	6,6,6	6	Orphan	csa3,WYL,cas3,DEDDh	NA|92aa|up_1|NC_008686.1_2424333_2424609_-,NA|287aa|down_5|NC_008686.1_2432539_2433400_-	NA|459aa|up_9|NC_008686.1_2408430_2409807_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|400aa|up_8|NC_008686.1_2409814_2411014_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|747aa|up_7|NC_008686.1_2411013_2413254_-	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|2212aa|up_6|NC_008686.1_2413327_2419963_-	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|135aa|up_5|NC_008686.1_2420088_2420493_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|102aa|up_4|NC_008686.1_2422040_2422346_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|305aa|up_3|NC_008686.1_2422230_2423145_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|318aa|up_2|NC_008686.1_2423383_2424337_-	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|92aa|up_1|NC_008686.1_2424333_2424609_-	NA	NA|263aa|up_0|NC_008686.1_2424702_2425491_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|446aa|down_0|NC_008686.1_2426534_2427872_-	pfam01076, Mob_Pre, Plasmid recombination enzyme	NA|304aa|down_1|NC_008686.1_2428011_2428923_+	COG2962, RarD, Predicted permeases [General function prediction only]	NA|232aa|down_2|NC_008686.1_2428964_2429660_+	COG4649, COG4649, Uncharacterized protein conserved in bacteria [Function unknown]	NA|441aa|down_3|NC_008686.1_2429741_2431064_+	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL	NA|490aa|down_4|NC_008686.1_2431060_2432530_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|287aa|down_5|NC_008686.1_2432539_2433400_-	NA	NA|431aa|down_6|NC_008686.1_2433456_2434749_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|110aa|down_7|NC_008686.1_2434830_2435160_-	cd02951, SoxW, SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation	NA|340aa|down_8|NC_008686.1_2435326_2436346_+	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB	NA|197aa|down_9|NC_008686.1_2436329_2436920_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
