assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000203915.1_ASM20391v1	NC_008390	Burkholderia ambifaria AMMD chromosome 1, complete sequence	1	179862-180104	1	PILER-CR	no		WYL,cas3,DEDDh,csa3,Cas14u_CAS-V,DinG	Orphan	TATGCGGAAGCGCACAACAACCTCGGCAACGTGCTGCGC	39	1	1	180003-180065	NC_008390.1_182501-182563	NA	2	2	Orphan	WYL,cas3,DEDDh,csa3,Cas14u_CAS-V,DinG,c2c9_V-U4,RT	NA|262aa|up_3|NC_008390.1_174414_175200_-,NA	NA|529aa|up_9|NC_008390.1_165991_167578_+	TIGR04222, integral_membrane_protein, TIGR04222 domain	NA|929aa|up_8|NC_008390.1_167605_170392_-	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|403aa|up_7|NC_008390.1_170388_171597_-	PRK11706, PRK11706, TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional	NA|217aa|up_6|NC_008390.1_171658_172309_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|236aa|up_5|NC_008390.1_172319_173027_-	pfam08889, WbqC, WbqC-like protein family	NA|462aa|up_4|NC_008390.1_173032_174418_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|262aa|up_3|NC_008390.1_174414_175200_-	NA	NA|599aa|up_2|NC_008390.1_175603_177400_+	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|327aa|up_1|NC_008390.1_177357_178338_+	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs	NA|402aa|up_0|NC_008390.1_178334_179540_+	pfam13489, Methyltransf_23, Methyltransferase domain	NA|829aa|down_0|NC_008390.1_182050_184537_+	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|755aa|down_1|NC_008390.1_184533_186798_+	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|99aa|down_2|NC_008390.1_186943_187240_-	pfam05400, FliT, Flagellar protein FliT	NA|476aa|down_3|NC_008390.1_187275_188703_-	PRK08032, fliD, flagellar capping protein; Reviewed	NA|275aa|down_4|NC_008390.1_188890_189715_-	PRK12802, PRK12802, flagellin; Provisional	NA|71aa|down_5|NC_008390.1_190256_190469_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|202aa|down_6|NC_008390.1_190723_191329_-	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|294aa|down_7|NC_008390.1_191470_192352_+	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]	NA|278aa|down_8|NC_008390.1_192642_193476_+	PRK10976, PRK10976, putative hydrolase; Provisional	NA|247aa|down_9|NC_008390.1_193581_194322_-	PRK05420, PRK05420, aquaporin Z; Provisional
GCF_000203915.1_ASM20391v1	NC_008390	Burkholderia ambifaria AMMD chromosome 1, complete sequence	2	566346-566440	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,Cas14u_CAS-V,DinG	Orphan	CGCGTTGCCCGCGACCGCGCCGA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,Cas14u_CAS-V,DinG,c2c9_V-U4,RT	NA|105aa|up_7|NC_008390.1_558915_559230_+,NA|70aa|up_5|NC_008390.1_560051_560261_-,NA|61aa|up_3|NC_008390.1_563395_563578_+,NA|109aa|up_1|NC_008390.1_564936_565263_+,NA|215aa|down_8|NC_008390.1_573852_574497_-	NA|456aa|up_9|NC_008390.1_556551_557919_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|298aa|up_8|NC_008390.1_558008_558902_+	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|105aa|up_7|NC_008390.1_558915_559230_+	NA	NA|197aa|up_6|NC_008390.1_559226_559817_+	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|70aa|up_5|NC_008390.1_560051_560261_-	NA	NA|1000aa|up_4|NC_008390.1_560282_563282_+	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha	NA|61aa|up_3|NC_008390.1_563395_563578_+	NA	NA|404aa|up_2|NC_008390.1_563641_564853_+	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated	NA|109aa|up_1|NC_008390.1_564936_565263_+	NA	NA|221aa|up_0|NC_008390.1_565291_565954_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|313aa|down_0|NC_008390.1_566676_567615_-	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|168aa|down_1|NC_008390.1_567708_568212_-	PRK00522, tpx, thiol peroxidase	NA|472aa|down_2|NC_008390.1_568284_569700_-	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|301aa|down_3|NC_008390.1_569745_570648_-	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|456aa|down_4|NC_008390.1_570650_572018_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|158aa|down_5|NC_008390.1_572103_572577_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|151aa|down_6|NC_008390.1_572643_573096_-	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|185aa|down_7|NC_008390.1_573290_573845_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|215aa|down_8|NC_008390.1_573852_574497_-	NA	NA|462aa|down_9|NC_008390.1_574720_576106_+	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
GCF_000203915.1_ASM20391v1	NC_008390	Burkholderia ambifaria AMMD chromosome 1, complete sequence	3	1345726-1345798	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,Cas14u_CAS-V,DinG	Orphan	CGACCGCGAAGCATGGAACCAGAG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,Cas14u_CAS-V,DinG,c2c9_V-U4,RT	NA,NA|107aa|down_5|NC_008390.1_1352428_1352749_+,NA|261aa|down_8|NC_008390.1_1356033_1356816_+	NA|387aa|up_9|NC_008390.1_1333678_1334839_-	PRK03643, PRK03643, tagaturonate reductase	NA|336aa|up_8|NC_008390.1_1334863_1335871_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|291aa|up_7|NC_008390.1_1335884_1336757_-	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|339aa|up_6|NC_008390.1_1336753_1337770_-	cd19161, AKR_AKR15A1, Microbacterium luteolum pyridoxal 4-dehydrogenase (PLD) and similar proteins	NA|316aa|up_5|NC_008390.1_1337836_1338784_-	cd20008, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein such as CUT2	NA|344aa|up_4|NC_008390.1_1338823_1339855_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|518aa|up_3|NC_008390.1_1339847_1341401_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|235aa|up_2|NC_008390.1_1341640_1342345_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|154aa|up_1|NC_008390.1_1342727_1343189_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|775aa|up_0|NC_008390.1_1343185_1345510_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|610aa|down_0|NC_008390.1_1345954_1347784_+	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|327aa|down_1|NC_008390.1_1347910_1348891_+	cd08241, QOR1, Quinone oxidoreductase (QOR)	NA|457aa|down_2|NC_008390.1_1349065_1350436_-	PRK10604, PRK10604, sensor protein RstB; Provisional	NA|242aa|down_3|NC_008390.1_1350436_1351162_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|249aa|down_4|NC_008390.1_1351408_1352155_+	pfam06629, MipA, MltA-interacting protein MipA	NA|107aa|down_5|NC_008390.1_1352428_1352749_+	NA	NA|405aa|down_6|NC_008390.1_1352822_1354037_-	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|387aa|down_7|NC_008390.1_1354477_1355638_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|261aa|down_8|NC_008390.1_1356033_1356816_+	NA	NA|193aa|down_9|NC_008390.1_1356937_1357516_+	smart00903, Flavin_Reduct, Flavin reductase like domain
GCF_000203915.1_ASM20391v1	NC_008390	Burkholderia ambifaria AMMD chromosome 1, complete sequence	4	1819786-1819891	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,Cas14u_CAS-V,DinG	Orphan	CGGGGTTCAAGGAAAGGTAAAGGAG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,Cas14u_CAS-V,DinG,c2c9_V-U4,RT	NA|201aa|up_9|NC_008390.1_1810760_1811363_-,NA	NA|201aa|up_9|NC_008390.1_1810760_1811363_-	NA	NA|273aa|up_8|NC_008390.1_1811349_1812168_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|282aa|up_7|NC_008390.1_1812327_1813173_+	cd07576, R-amidase_like, Pseudomonas sp	NA|447aa|up_6|NC_008390.1_1813302_1814643_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|163aa|up_5|NC_008390.1_1815058_1815547_-	cd04332, YbaK_like, YbaK-like	NA|96aa|up_4|NC_008390.1_1816011_1816299_+	PRK12866, PRK12866, YciI-like protein; Reviewed	NA|326aa|up_3|NC_008390.1_1816308_1817286_-	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily	NA|49aa|up_2|NC_008390.1_1817465_1817612_+	pfam08173, YbgT_YccB, Membrane bound YbgT-like protein	NA|206aa|up_1|NC_008390.1_1817608_1818226_+	pfam13671, AAA_33, AAA domain	NA|367aa|up_0|NC_008390.1_1818333_1819434_-	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	NA|155aa|down_0|NC_008390.1_1819949_1820414_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|181aa|down_1|NC_008390.1_1820768_1821311_+	pfam07813, LTXXQ, LTXXQ motif family protein	NA|144aa|down_2|NC_008390.1_1821439_1821871_+	pfam14083, PGDYG, PGDYG protein	NA|121aa|down_3|NC_008390.1_1821971_1822334_-	pfam11226, DUF3022, Protein of unknown function (DUF3022)	NA|263aa|down_4|NC_008390.1_1822346_1823135_-	pfam10086, DUF2324, Putative membrane peptidase family (DUF2324)	NA|348aa|down_5|NC_008390.1_1823189_1824233_-	cd06283, PBP1_RegR_EndR_KdgR-like, ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR	NA|322aa|down_6|NC_008390.1_1824555_1825521_-	PRK15409, PRK15409, glyoxylate/hydroxypyruvate reductase GhrB	NA|427aa|down_7|NC_008390.1_1825526_1826807_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|331aa|down_8|NC_008390.1_1826967_1827960_-	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|255aa|down_9|NC_008390.1_1827988_1828753_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
GCF_000203915.1_ASM20391v1	NC_008390	Burkholderia ambifaria AMMD chromosome 1, complete sequence	5	3231808-3231879	4	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,Cas14u_CAS-V,DinG	Orphan	GGTCCCATGCTTCGCGGTCGACC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,Cas14u_CAS-V,DinG,c2c9_V-U4,RT	NA|191aa|up_6|NC_008390.1_3223306_3223879_-,NA	NA|113aa|up_9|NC_008390.1_3220160_3220499_-	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|84aa|up_8|NC_008390.1_3220855_3221107_+	pfam04380, BMFP, Membrane fusogenic activity	NA|537aa|up_7|NC_008390.1_3221362_3222973_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|191aa|up_6|NC_008390.1_3223306_3223879_-	NA	NA|179aa|up_5|NC_008390.1_3224039_3224576_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|452aa|up_4|NC_008390.1_3224657_3226013_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|673aa|up_3|NC_008390.1_3226092_3228111_-	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|430aa|up_2|NC_008390.1_3228115_3229405_-	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|562aa|up_1|NC_008390.1_3229758_3231444_-	PRK09395, actP, cation/acetate symporter ActP	NA|102aa|up_0|NC_008390.1_3231455_3231761_-	pfam04341, DUF485, Protein of unknown function, DUF485	NA|402aa|down_0|NC_008390.1_3231999_3233205_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|382aa|down_1|NC_008390.1_3233235_3234381_-	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit	NA|399aa|down_2|NC_008390.1_3234395_3235592_-	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit	NA|712aa|down_3|NC_008390.1_3235621_3237757_-	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|321aa|down_4|NC_008390.1_3237985_3238948_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|627aa|down_5|NC_008390.1_3239018_3240899_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|331aa|down_6|NC_008390.1_3241178_3242171_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|252aa|down_7|NC_008390.1_3242163_3242919_-	PRK14343, PRK14343, lipoyl(octanoyl) transferase LipB	NA|109aa|down_8|NC_008390.1_3243002_3243329_-	pfam11142, DUF2917, Protein of unknown function (DUF2917)	NA|329aa|down_9|NC_008390.1_3243431_3244418_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional
