The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_008577	Shewanella sp. ANA-3 chromosome 1, complete sequence	4972204	1286559	1294003	4972204		Staphylococcus_phage(50.0%)	7	NA	NA
WP_011716199.1|1286559_1288227_-	energy-dependent translational throttle protein EttA	NA	A0A1V0SKJ1	Klosneuvirus	27.6	8.6e-39
WP_011625551.1|1288417_1289671_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.1	4.6e-101
WP_011073317.1|1289881_1290331_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_011716200.1|1290406_1291552_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	34.9	5.7e-50
WP_011716201.1|1291559_1292216_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	34.0	8.7e-27
WP_011716202.1|1292283_1293387_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.7	5.8e-68
WP_041412575.1|1293526_1294003_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	45.0	8.8e-29
>prophage 2
NC_008577	Shewanella sp. ANA-3 chromosome 1, complete sequence	4972204	1315750	1330855	4972204	tRNA	uncultured_Mediterranean_phage(25.0%)	13	NA	NA
WP_011716218.1|1315750_1317046_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	58.9	1.4e-132
WP_039978374.1|1317089_1317446_+	cell division protein FtsB	NA	NA	NA	NA	NA
WP_011716219.1|1317456_1318206_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_011621907.1|1318257_1318737_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_011716220.1|1318766_1319894_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_011716221.1|1319890_1320640_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.9	3.1e-73
WP_011716222.1|1320636_1321272_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	51.2	1.7e-35
WP_011716223.1|1321356_1322253_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV79	Clostridium_phage	31.0	2.6e-10
WP_011621912.1|1322333_1323314_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	32.9	1.4e-33
WP_011716224.1|1323428_1326014_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	22.9	6.7e-30
WP_011716225.1|1326396_1327470_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	61.9	1.4e-111
WP_041412576.1|1327544_1327955_+	regulatory protein RecX	NA	NA	NA	NA	NA
WP_011716227.1|1328230_1330855_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.2	4.2e-80
>prophage 3
NC_008577	Shewanella sp. ANA-3 chromosome 1, complete sequence	4972204	2457917	2469223	4972204	tRNA	uncultured_Caudovirales_phage(28.57%)	12	NA	NA
WP_011717032.1|2457917_2460671_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.7	4.2e-83
WP_011717033.1|2460740_2461361_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_011717034.1|2461369_2462701_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	39.4	1.9e-76
WP_011622732.1|2462693_2463068_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	37.4	3.5e-09
WP_011622733.1|2463086_2464373_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	9.8e-99
WP_011717035.1|2464581_2464920_-	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA	NA
WP_011717036.1|2464913_2465195_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA	NA
WP_011717037.1|2465194_2465551_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA	NA
WP_041413025.1|2465565_2465955_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	43.3	1.1e-21
WP_011717039.1|2466014_2466674_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	44.3	1.1e-34
WP_041412630.1|2466933_2467836_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011717040.1|2467951_2469223_+	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	22.3	4.1e-17
>prophage 4
NC_008577	Shewanella sp. ANA-3 chromosome 1, complete sequence	4972204	2733050	2743270	4972204		Yellowstone_lake_phycodnavirus(12.5%)	13	NA	NA
WP_011717217.1|2733050_2734769_+	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.9	2.8e-56
WP_011622520.1|2734768_2735263_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_011622519.1|2735397_2735841_-	Hsp20 family protein	NA	A0A2L0V0Y9	Agrobacterium_phage	49.5	1.8e-20
WP_011717218.1|2736145_2736577_-	nucleoside-diphosphate kinase	NA	K7YW26	Megavirus	40.2	8.2e-18
WP_041412653.1|2736798_2736966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011622517.1|2737161_2737359_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_011622516.1|2737427_2738327_-	30S ribosomal protein S6--L-glutamate ligase	NA	I3ULC9	Synechococcus_phage	33.2	3.2e-40
WP_011622515.1|2738482_2738818_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_011717219.1|2738826_2740689_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	39.3	7.2e-103
WP_011717220.1|2740756_2741281_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_011072278.1|2741296_2741620_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	43.0	4.1e-22
WP_011072277.1|2741634_2742018_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	77.4	1.0e-51
WP_011626051.1|2742055_2743270_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	31.1	6.7e-33
>prophage 1
NC_008573	Shewanella sp. ANA-3 plasmid unnamed1, complete sequence	278942	195316	252246	278942	transposase,integrase	Salmonella_phage(36.36%)	59	211260:211274	252782:252796
WP_011711642.1|195316_198304_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	23.1	2.0e-62
WP_040133153.1|198420_198987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_040133152.1|198983_199379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011711644.1|199402_199837_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011711645.1|199856_200657_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_011711646.1|200668_202324_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.2	3.6e-37
WP_007642843.1|202361_202781_-	organomercurial transporter MerC	NA	NA	NA	NA	NA
WP_007642844.1|202784_203063_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_007642845.1|203115_203463_-	mercury transporter	NA	NA	NA	NA	NA
WP_040133151.1|203556_203943_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_011711648.1|203945_204968_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011711649.1|205172_206222_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_011711650.1|206335_209230_-|transposase	Tn3-like element ISShes11 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	72.5	0.0e+00
WP_000147567.1|209232_209793_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
WP_011638892.1|209918_210998_-	signal peptidase II	NA	NA	NA	NA	NA
211260:211274	attL	ATGGCAAAGCCGATG	NA	NA	NA	NA
WP_011638890.1|213485_213926_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_011711651.1|214516_215089_-	peptide methionine sulfoxide reductase	NA	NA	NA	NA	NA
WP_011711652.1|215085_215586_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_011711653.1|215588_216035_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_011711654.1|216271_216787_-	DUF417 family protein	NA	NA	NA	NA	NA
WP_011711655.1|216924_217479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000257537.1|218567_219854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002119794.1|220471_221449_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	35.0	1.7e-18
WP_001281573.1|221668_222331_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
WP_011711656.1|222536_222782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005403705.1|222836_223277_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_011711657.1|223308_223545_-	glutaredoxin	NA	A0A088C3W5	Shewanella_sp._phage	28.2	2.0e-05
WP_011711658.1|223572_224061_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002123001.1|224183_225119_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_011711659.1|225121_225862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011711660.1|226702_227731_+|transposase	IS30-like element ISShes10 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.6	6.5e-45
WP_011711661.1|227804_228281_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001166628.1|228688_229144_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_001294653.1|229215_229611_+	mercuric ion transporter MerT	NA	NA	NA	NA	NA
WP_000732275.1|229626_229902_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_000522996.1|229929_230355_+	organomercurial transporter MerC	NA	NA	NA	NA	NA
WP_000209296.1|230393_232079_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.8e-39
WP_001277466.1|232096_232462_+	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_001087807.1|232458_232695_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_001446012.1|232678_232798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000993245.1|232760_232973_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_041413367.1|233940_234216_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_011711663.1|234372_235905_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_011711664.1|235901_236840_-	patatin-like phospholipase family protein	NA	A0A1B2LRS3	Wolbachia_phage	37.1	2.8e-26
WP_011711665.1|236920_238486_-	SAVED domain-containing protein	NA	NA	NA	NA	NA
WP_049796111.1|238478_238964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011711667.1|238947_240675_-	ThiF family adenylyltransferase	NA	NA	NA	NA	NA
WP_011711668.1|240676_241708_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_011711669.1|241908_242253_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011711670.1|242262_243072_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_041413370.1|243671_243860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011711671.1|243929_244595_-|integrase	site-specific integrase	integrase	K4K327	Caulobacter_virus	27.6	3.2e-05
WP_011711672.1|244732_245080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049796112.1|245123_245360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011711673.1|245591_245894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041413373.1|246002_246305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011711674.1|246301_247450_-	DGQHR domain-containing protein	NA	NA	NA	NA	NA
WP_011711675.1|247613_249209_+	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA	NA
WP_011711676.1|249258_252246_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	23.6	9.3e-68
252782:252796	attR	CATCGGCTTTGCCAT	NA	NA	NA	NA
