The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	384636	398260	2913900	coat,integrase,terminase,capsid	Staphylococcus_phage(89.47%)	23	387147:387161	400497:400511
WP_001052483.1|384636_384828_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|385071_385368_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934798.1|385388_385892_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.1	3.5e-60
WP_000897044.1|385943_386186_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000357934.1|386367_387198_-	KilA-N domain-containing protein	NA	Q4ZC41	Staphylococcus_virus	72.6	2.6e-113
387147:387161	attL	TTTCATTTTTAAATA	NA	NA	NA	NA
WP_000270129.1|387680_388898_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	95.0	1.6e-215
WP_000668215.1|389160_389886_-	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	28.1	3.1e-17
WP_001245562.1|390057_390270_+	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	87.1	6.6e-29
WP_001138300.1|390270_390543_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	94.4	7.2e-44
WP_000784886.1|390554_390710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001171847.1|390694_390940_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	97.0	1.2e-29
WP_000403843.1|390899_391283_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	2.2e-62
WP_001103935.1|391283_391583_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	54.4	1.7e-17
WP_000343527.1|391657_393274_+	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.2	5.6e-245
WP_000148372.1|393449_394253_+	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	97.8	3.6e-152
WP_001149387.1|394239_394512_+	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
WP_001019769.1|394513_395155_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.0	9.4e-111
WP_001190614.1|395604_395946_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_000846277.1|395957_396536_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	3.7e-29
WP_000448775.1|396553_396772_+|capsid	capsid morphogenesis B protein	capsid	NA	NA	NA	NA
WP_000771357.1|396822_397350_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.6	3.2e-88
WP_000358778.1|397352_397694_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_001293084.1|397690_398260_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.8	8.7e-100
400497:400511	attR	TATTTAAAAATGAAA	NA	NA	NA	NA
>prophage 2
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	420137	436150	2913900	integrase	Streptococcus_phage(76.92%)	15	416045:416059	431974:431988
416045:416059	attL	GATTCATCATTTGAC	NA	NA	NA	NA
WP_000264071.1|420137_421604_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424966.1|421628_423170_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000237797.1|423237_424431_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
WP_000633908.1|424457_424658_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_000845142.1|425155_425386_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	77.6	6.7e-27
WP_000804879.1|425382_425805_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	68.6	7.5e-48
WP_001227350.1|426335_426689_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
WP_032506803.1|426746_426935_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	61.4	7.4e-16
WP_000691737.1|427032_428952_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.2	0.0e+00
WP_001791010.1|428967_429084_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000584387.1|429328_430258_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.1e-83
WP_000768373.1|430274_431297_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	2.4e-132
WP_000192394.1|431293_433321_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	65.3	4.4e-194
431974:431988	attR	GATTCATCATTTGAC	NA	NA	NA	NA
WP_000331168.1|433317_435771_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	78.8	0.0e+00
WP_000723887.1|435754_436150_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.6	5.9e-47
>prophage 3
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	439302	447468	2913900		Streptococcus_phage(85.71%)	10	NA	NA
WP_000870467.1|439302_439797_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	63.4	2.8e-54
WP_000675717.1|439863_440643_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_001009054.1|440684_440906_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
WP_000055376.1|440902_441193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000426689.1|441189_442374_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	68.1	6.3e-161
WP_001130245.1|442555_443959_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.7	7.5e-177
WP_000185761.1|443980_444754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001234191.1|444763_445141_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
WP_000421279.1|445161_445476_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
WP_000181735.1|445674_447468_-	ATP-dependent helicase	NA	E3T5J8	Cafeteria_roenbergensis_virus	23.8	6.9e-26
>prophage 4
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	773251	781071	2913900		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|773251_774307_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|774306_774993_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|774967_775441_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|775782_776223_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|776502_777087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|777185_777899_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|777902_778322_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|778323_778992_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|779342_779936_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|779919_781071_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 5
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	793043	807830	2913900		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|793043_794102_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|794452_794995_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429018.1|795674_796592_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|796682_796784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|796861_798367_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|798707_799208_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|799227_800094_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|800894_801293_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|801255_803361_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|803478_804450_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|804963_805119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|805157_806129_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|806115_807072_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|807068_807830_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 6
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	858633	917821	2913900	coat,integrase,terminase,transposase	Staphylococcus_phage(68.29%)	73	905112:905128	920961:920977
WP_001050064.1|858633_861006_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.2	2.7e-94
WP_001085185.1|861027_861492_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_000149511.1|862054_863161_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.4	1.1e-77
WP_000358990.1|863150_863954_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JC02	uncultured_Caudovirales_phage	55.9	5.3e-10
WP_001045296.1|864089_864293_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_000163544.1|864328_864547_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784892.1|864558_864732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|864698_864902_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403837.1|864903_865287_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
WP_001103966.1|865287_865608_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	97.1	4.2e-51
WP_000974923.1|865678_867931_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	72.8	0.0e+00
WP_000567972.1|868200_868545_+	hypothetical protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	73.5	5.2e-39
WP_001019277.1|868546_869188_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	89.2	2.0e-105
WP_001190605.1|869637_869979_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.1e-57
WP_000214169.1|870009_870663_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	100.0	9.0e-117
WP_000771364.1|870715_871243_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	95.4	7.8e-87
WP_025174984.1|871374_871587_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	3.2e-31
WP_001293073.1|871583_872153_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
WP_000624990.1|872581_873100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000453652.1|873125_873524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000705255.1|873510_874290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001239273.1|875617_876553_-	TDT family transporter	NA	NA	NA	NA	NA
WP_001058299.1|877836_878160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|879543_880716_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001790158.1|881008_881164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000608179.1|881171_881693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001167178.1|881831_882362_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_001056231.1|882624_885282_+	MSCRAMM family adhesin clumping factor ClfA	NA	NA	NA	NA	NA
WP_000728056.1|887378_888401_+	extracellular matrix protein-binding adhesin Emp	NA	NA	NA	NA	NA
WP_000824472.1|888735_889206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001548082.1|889546_890233_+	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	3.8e-33
WP_001059082.1|890589_890790_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_000005886.1|891285_891504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001004395.1|891565_891850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001106644.1|891937_892507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000052078.1|892694_892883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001059690.1|892911_893172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000145163.1|893512_893716_+	sterile alpha motif-like domain-containing protein	NA	NA	NA	NA	NA
WP_000368687.1|893712_893949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001140685.1|894173_894755_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	39.9	3.6e-32
WP_000255561.1|894827_895445_-	amino acid transporter	NA	NA	NA	NA	NA
WP_000569884.1|895599_896094_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000974460.1|896491_896914_-	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000150017.1|897061_897778_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	30.6	3.0e-17
WP_000422909.1|897860_898400_+	nitroreductase	NA	NA	NA	NA	NA
WP_001190695.1|898549_898870_-	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000589549.1|899013_899370_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_000290485.1|899527_899908_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_000932231.1|900086_900965_+	DUF1963 domain-containing protein	NA	NA	NA	NA	NA
WP_001018962.1|901650_902037_+	topiosmerase	NA	NA	NA	NA	NA
WP_001065801.1|902029_902326_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000571218.1|902575_903601_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
WP_000520233.1|903593_904289_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|904306_905128_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
905112:905128	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000264182.1|905271_906492_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.3	3.5e-98
WP_000733773.1|906579_907308_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	2.4e-22
WP_001033319.1|907331_908060_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	1.3e-28
WP_001228758.1|908129_908561_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	1.5e-35
WP_000281657.1|908577_909036_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|909047_909380_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243851.1|909572_909836_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|909828_910101_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|910112_910259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|910251_910461_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103942.1|910463_910784_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_000447445.1|911731_913441_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.4	6.9e-302
WP_000356943.1|913751_914132_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	97.6	1.0e-67
WP_001019597.1|914128_914770_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	98.1	8.8e-117
WP_001190605.1|915305_915647_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.1e-57
WP_000214169.1|915677_916331_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	100.0	9.0e-117
WP_000771364.1|916383_916911_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	95.4	7.8e-87
WP_025174984.1|917042_917255_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	3.2e-31
WP_001293073.1|917251_917821_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
920961:920977	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
>prophage 7
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	1010314	1049675	2913900	bacteriocin,tRNA,protease,transposase	Staphylococcus_phage(33.33%)	35	NA	NA
WP_000195430.1|1010314_1011487_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	1.7e-134
WP_001180262.1|1012003_1012885_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000448934.1|1012926_1013916_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1014210_1014606_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217730.1|1014976_1015696_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000082731.1|1016849_1018658_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
WP_000896697.1|1019117_1019924_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214065.1|1019946_1020312_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224622.1|1020415_1021009_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|1021194_1021542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1021558_1022194_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1022210_1023020_+	NAD kinase	NA	NA	NA	NA	NA
WP_171019160.1|1023029_1023872_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062417.1|1023892_1025278_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395163.1|1025287_1027132_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000195429.1|1027413_1028586_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000570698.1|1028812_1030381_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288681.1|1030522_1031281_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600392.1|1031474_1031984_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154222.1|1032096_1033287_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1033264_1034440_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340118.1|1034872_1036354_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1036337_1036598_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049959.1|1036597_1038160_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_000928413.1|1038461_1039265_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001838330.1|1039483_1041808_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021864.1|1041824_1043183_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414177.1|1043321_1044833_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1045319_1045889_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1046097_1046316_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1046396_1047383_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1047581_1047758_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1047772_1048375_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001790623.1|1049291_1049393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790097.1|1049402_1049675_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 8
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	1087030	1095503	2913900		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1087030_1087513_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1087499_1088624_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1088627_1089332_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1089331_1089595_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1089596_1090268_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1090260_1092450_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483722.1|1092428_1093913_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	9.4e-45
WP_000030812.1|1093905_1094934_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1094936_1095503_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 9
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	1638411	1646723	2913900	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1638411_1639197_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1639322_1640213_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1640222_1641569_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1641682_1642783_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1642785_1643463_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1643593_1644700_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1644923_1646723_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 10
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	1715860	1724903	2913900	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1715860_1716379_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1716400_1718674_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1718876_1721156_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1721430_1721691_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1721709_1722849_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1722871_1723897_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1723898_1724903_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 11
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	1865050	1935502	2913900	tRNA,protease,transposase	Staphylococcus_phage(96.23%)	68	NA	NA
WP_001549041.1|1865050_1867468_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_000526539.1|1869047_1870001_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1869997_1870561_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1870680_1871082_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000195430.1|1871450_1872623_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	1.7e-134
WP_000266096.1|1873995_1874823_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1874825_1874945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1875056_1876058_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1876179_1876644_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159024.1|1876656_1877838_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.6e-225
WP_000493892.1|1877848_1878481_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077344.1|1878487_1879531_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261677.1|1880011_1881514_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1882036_1882351_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1882350_1883643_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1883660_1884056_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1884350_1885205_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1885480_1885705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1885903_1886374_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1886486_1886930_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1886916_1887360_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1887655_1888291_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1888730_1889444_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1889703_1890006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1890261_1890627_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1890623_1890977_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1893059_1893893_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1894104_1895013_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1895137_1896331_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1896701_1898294_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_002868962.1|1899288_1900035_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1900039_1900513_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1900578_1900836_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1900832_1901834_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1901838_1903317_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1903475_1903931_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1904233_1904884_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1904964_1905960_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669049.1|1906035_1906662_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.2	2.7e-78
WP_000627551.1|1906702_1907047_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1907144_1907696_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1907913_1908555_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1908668_1908854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1908855_1909032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1909042_1909426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1910029_1910173_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1910375_1910471_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1910593_1910695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1911042_1911420_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1911940_1916053_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072576.1|1916902_1918102_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000028659.1|1918094_1919651_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_001791797.1|1919814_1919949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038702.1|1920013_1920733_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
WP_001038867.1|1920853_1921573_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1921630_1922353_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1922477_1923185_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|1924148_1924715_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1925188_1925887_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1925883_1926645_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1926641_1927334_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1927356_1928730_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1928739_1929258_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1929273_1930518_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001803290.1|1930510_1932253_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	54.1	2.5e-259
WP_000416756.1|1932317_1932461_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1933197_1933341_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000473596.1|1934566_1935502_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 12
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	2018812	2117940	2913900	tail,holin,capsid,terminase,head,protease,portal,tRNA,integrase,transposase	Staphylococcus_phage(89.61%)	114	2066603:2066632	2120881:2120910
WP_000545370.1|2018812_2020240_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027928.1|2020252_2021710_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2021711_2022014_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957015.1|2022380_2023919_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|2024007_2025207_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2025219_2027223_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|2027226_2029419_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272068.1|2029415_2030108_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2030279_2030582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2030690_2031986_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827748.1|2032846_2034013_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2034043_2034370_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2034661_2034835_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2034815_2035418_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2035688_2036510_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284421.1|2036502_2037972_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2038155_2039232_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2039251_2040046_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2040117_2040225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323152.1|2040235_2041798_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2042002_2043100_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2043471_2044032_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2044084_2045014_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2045208_2045382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021215.1|2045433_2046813_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2046932_2047961_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2048230_2048632_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2049204_2049378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2049828_2050869_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713060.1|2050925_2051768_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2051764_2052322_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2052381_2052906_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2053026_2053590_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2053655_2054396_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2054395_2055268_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2055264_2055945_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2055945_2056842_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2056838_2057219_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2057482_2057659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2057901_2058000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2058199_2059486_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000195429.1|2059669_2060842_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001549158.1|2061442_2063197_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|2064154_2064334_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2064644_2064905_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|2064957_2065308_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
2066603:2066632	attL	AAAAATAGGCAAGTACCGAAGTACCTGCCT	NA	NA	NA	NA
WP_000920041.1|2066805_2067297_-	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_000861038.1|2067487_2068243_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2068254_2068509_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_072482930.1|2068720_2068897_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	3.8e-22
WP_000750412.1|2069005_2069779_-	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_000340977.1|2070151_2070526_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|2070581_2070869_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000058.1|2070914_2071067_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_000582173.1|2071059_2074842_-	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.7	0.0e+00
WP_000567408.1|2074857_2076342_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001795393.1|2076338_2080868_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	100.0	0.0e+00
WP_001789580.1|2080924_2081086_-	hypothetical protein	NA	A0A0H3U330	Staphylococcus_phage	100.0	1.6e-22
WP_001096355.1|2081112_2081463_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_072050172.1|2081512_2081737_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
WP_000268741.1|2081778_2082423_-|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|2082423_2082831_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114225.1|2082827_2083232_-	HK97 gp10 family phage protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000755147.1|2083228_2083591_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	99.2	8.3e-64
WP_000150936.1|2083574_2083859_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2083848_2084133_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154555.1|2084152_2085298_-|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000861914.1|2085321_2086059_-|protease	Clp protease ClpP	protease	C8CH20	Staphylococcus_phage	100.0	2.3e-129
WP_000025274.1|2086042_2087230_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625090.1|2087245_2088907_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	99.8	0.0e+00
WP_000402904.1|2088903_2089248_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2089378_2089678_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590126.1|2089909_2090326_-	hypothetical protein	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
WP_000265039.1|2090353_2090554_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	98.5	1.4e-28
WP_000595265.1|2090553_2090703_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195820.1|2090699_2090906_-	DUF1381 domain-containing protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
WP_001066444.1|2090942_2091479_-	dUTP diphosphatase	NA	A0A1X9H0S5	Staphylococcus_phage	100.0	1.4e-96
WP_000197967.1|2091471_2091882_-	hypothetical protein	NA	C8CH13	Staphylococcus_phage	100.0	2.3e-70
WP_001105598.1|2091878_2092388_-	hypothetical protein	NA	A0A1X9H0D4	Staphylococcus_phage	100.0	3.2e-93
WP_000982711.1|2092384_2092834_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	99.3	2.1e-80
WP_000131366.1|2092898_2093141_-	hypothetical protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
WP_000101274.1|2093144_2093513_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
WP_000401964.1|2093525_2093930_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000338528.1|2093938_2094157_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148301.1|2094163_2095048_-	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	95.9	3.1e-136
WP_000934770.1|2095077_2095548_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	99.4	4.8e-80
WP_071621397.1|2095548_2096166_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138481.1|2096246_2097167_-	recombinase RecT	NA	A0A1V0E5D7	Staphylococcus_phage	100.0	1.0e-166
WP_000700547.1|2097168_2099112_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	98.9	0.0e+00
WP_001205732.1|2099120_2099384_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291489.1|2099392_2099653_-	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_000066020.1|2099745_2099907_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120197.1|2099903_2100224_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|2100282_2100915_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|2100929_2101070_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_000388066.1|2101100_2101295_-	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	100.0	1.5e-19
WP_001148618.1|2101311_2102064_-	phage antirepressor KilAC domain-containing protein	NA	A0A1X9H0A0	Staphylococcus_phage	100.0	8.7e-140
WP_000351243.1|2102120_2102660_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|2102683_2102944_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000548578.1|2102956_2103196_-	helix-turn-helix transcriptional regulator	NA	G4KNM9	Staphylococcus_phage	100.0	2.3e-38
WP_000094093.1|2103366_2104074_+	helix-turn-helix transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	100.0	7.7e-130
WP_001049399.1|2104085_2104241_+	hypothetical protein	NA	A0A2I6PDR9	Staphylococcus_phage	100.0	6.3e-21
WP_001089804.1|2104227_2104413_+	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_000705238.1|2104612_2104780_+	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_000391618.1|2104919_2105459_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	33.1	9.0e-14
WP_000857197.1|2105631_2106669_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	5.9e-179
WP_000595324.1|2107787_2108804_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
WP_000791407.1|2108825_2109881_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206638.1|2110315_2111539_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000825510.1|2112815_2113727_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2113887_2115195_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2116046_2116490_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001797573.1|2116654_2117032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|2117349_2117940_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
2120881:2120910	attR	AAAAATAGGCAAGTACCGAAGTACCTGCCT	NA	NA	NA	NA
>prophage 13
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	2123828	2136159	2913900	integrase,coat,terminase	Staphylococcus_phage(77.78%)	19	2118849:2118868	2134181:2134200
2118849:2118868	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_001293073.1|2123828_2124398_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
WP_025174984.1|2124394_2124607_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	3.2e-31
WP_000771364.1|2124738_2125266_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	95.4	7.8e-87
WP_000214169.1|2125318_2125972_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	100.0	9.0e-117
WP_001190605.1|2126002_2126344_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.1e-57
WP_001019785.1|2126880_2127522_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	96.2	1.8e-114
WP_000998180.1|2127518_2127803_-	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	98.9	1.6e-49
WP_001039167.1|2127804_2128167_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	95.8	1.4e-63
WP_000432707.1|2128468_2129926_-	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	96.7	1.4e-279
WP_001002692.1|2129942_2130812_-	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	97.2	3.8e-163
WP_001103948.1|2130899_2131193_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	61.8	3.1e-24
WP_001058494.1|2131195_2131405_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	8.5e-29
WP_000784885.1|2131397_2131544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481967.1|2131540_2131858_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
WP_000153640.1|2131862_2132081_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_000620857.1|2132253_2132928_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
WP_000179344.1|2132941_2134114_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	97.7	3.0e-219
WP_000240653.1|2134182_2135799_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	1.2e-157
2134181:2134200	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000917289.1|2135874_2136159_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
>prophage 14
NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2913900	2763884	2791089	2913900	integrase,holin,transposase	Enterococcus_phage(25.0%)	26	2770023:2770037	2793365:2793379
WP_000066521.1|2763884_2765594_-|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
WP_000421699.1|2765854_2767345_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001789908.1|2767413_2767509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000198597.1|2767597_2768161_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000711870.1|2768330_2769953_-	BCCT family transporter	NA	NA	NA	NA	NA
2770023:2770037	attL	GATTCACAAAATTGA	NA	NA	NA	NA
WP_000173336.1|2770471_2771008_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	47.5	1.1e-40
WP_001071721.1|2771004_2772855_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	63.9	1.3e-234
WP_001083492.1|2773101_2774472_-	CitMHS family transporter	NA	NA	NA	NA	NA
WP_001806110.1|2774774_2774888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000062536.1|2774960_2775569_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_000775165.1|2775634_2777515_-	assimilatory sulfite reductase (NADPH) flavoprotein subunit	NA	NA	NA	NA	NA
WP_031774855.1|2777705_2777798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001065267.1|2777905_2778403_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	2.4e-21
WP_078064507.1|2778412_2778673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014937089.1|2779054_2779168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105999.1|2779951_2780626_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
WP_009560948.1|2780672_2782901_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	26.6	7.0e-44
WP_001176049.1|2782978_2783302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002504703.1|2783726_2783948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000941333.1|2783896_2784340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000717929.1|2784402_2784930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|2785092_2786265_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000067268.1|2786812_2787595_-	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA	NA
WP_000361059.1|2787745_2788123_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_014533070.1|2788129_2790022_-|integrase	phage integrase family protein	integrase	NA	NA	NA	NA
WP_050793693.1|2790018_2791089_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.4e-12
2793365:2793379	attR	GATTCACAAAATTGA	NA	NA	NA	NA
