assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000209755.1_ASM20975v1	NC_017529	Listeria monocytogenes L99, complete genome	1	511892-512476	1	CRT	no		csa3,DinG,WYL,casR,cas6,cas8b2,cas7,cas5,cas3,cas2,DEDDh,RT	Orphan	GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,WYL,casR,cas6,cas8b2,cas7,cas5,cas3,cas2,DEDDh,RT	NA,NA|158aa|down_0|NC_017529.1_513369_513843_+,NA|162aa|down_1|NC_017529.1_513862_514348_+,NA|89aa|down_3|NC_017529.1_514756_515023_+	NA|222aa|up_9|NC_017529.1_497188_497854_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|252aa|up_8|NC_017529.1_497874_498630_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_7|NC_017529.1_498746_500906_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_6|NC_017529.1_500902_502051_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_5|NC_017529.1_502055_503003_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_4|NC_017529.1_503159_504755_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_3|NC_017529.1_504889_506173_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_2|NC_017529.1_506173_507274_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_1|NC_017529.1_507266_508817_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_0|NC_017529.1_509444_510983_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|158aa|down_0|NC_017529.1_513369_513843_+	NA	NA|162aa|down_1|NC_017529.1_513862_514348_+	NA	NA|102aa|down_2|NC_017529.1_514375_514681_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NC_017529.1_514756_515023_+	NA	NA|321aa|down_4|NC_017529.1_515102_516065_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|187aa|down_5|NC_017529.1_516185_516746_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|567aa|down_6|NC_017529.1_516855_518556_+	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown]	NA|368aa|down_7|NC_017529.1_518706_519810_+	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional	NA|160aa|down_8|NC_017529.1_519899_520379_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|down_9|NC_017529.1_520536_520902_+	PRK13316, PRK13316, heme oxygenase IsdG
GCF_000209755.1_ASM20975v1	NC_017529	Listeria monocytogenes L99, complete genome	2	543351-543769	1,1,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,WYL,casR,cas6,cas8b2,cas7,cas5,cas3,cas2,DEDDh,RT	Unclear	GTTTTAGTTACTTAATGTGAAATGTAAAT,GTTTTAGTTACTTAATGTGAAATGTAAAT,GTTTTAGTTACTTAATGTGAAATGTAAATN	29,29,30	0	0	NA	NA	I-A:I-A:I-A	5,5,6	6	Unclear	csa3,DinG,WYL,casR,cas6,cas8b2,cas7,cas5,cas3,cas2,DEDDh,RT	NA|133aa|up_5|NC_017529.1_538341_538740_+,NA|214aa|down_0|NC_017529.1_543845_544487_-	NA|217aa|up_9|NC_017529.1_534404_535055_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NC_017529.1_535163_537224_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NC_017529.1_537227_537830_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NC_017529.1_537857_538325_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NC_017529.1_538341_538740_+	NA	NA|217aa|up_4|NC_017529.1_538750_539401_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NC_017529.1_539397_540444_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NC_017529.1_540459_540753_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NC_017529.1_540767_542039_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NC_017529.1_542178_543114_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|214aa|down_0|NC_017529.1_543845_544487_-	NA	NA|179aa|down_1|NC_017529.1_544497_545034_-	cd11375, Peptidase_M54, Peptidase family M54, also called archaemetzincins or archaelysins	NA|227aa|down_2|NC_017529.1_545257_545938_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_3|NC_017529.1_545962_546322_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_4|NC_017529.1_546328_546787_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|614aa|down_5|NC_017529.1_547167_549009_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_6|NC_017529.1_549109_549541_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_7|NC_017529.1_549587_551018_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_8|NC_017529.1_551138_551954_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_9|NC_017529.1_552306_553029_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6
GCF_000209755.1_ASM20975v1	NC_017529	Listeria monocytogenes L99, complete genome	3	559382-561162	2,2,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,WYL,casR,cas6,cas8b2,cas7,cas5,cas3,cas2,DEDDh,RT	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	3	3	560057-560093|560579-560614|560903-560938	NC_017529.1_80818-80782|NC_017529.1_1267110-1267145|NC_017529.1_2706533-2706498	I-A:I-A:I-A	26,27,27	27	Unclear	csa3,DinG,WYL,casR,cas6,cas8b2,cas7,cas5,cas3,cas2,DEDDh,RT	NA,NA|148aa|down_5|NC_017529.1_566710_567154_+,NA|492aa|down_8|NC_017529.1_569979_571455_+	NA|614aa|up_9|NC_017529.1_547167_549009_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|up_8|NC_017529.1_549109_549541_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_7|NC_017529.1_549587_551018_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_6|NC_017529.1_551138_551954_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_5|NC_017529.1_552306_553029_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_4|NC_017529.1_553044_554733_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NC_017529.1_554722_555592_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|208aa|up_2|NC_017529.1_555578_556202_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|728aa|up_1|NC_017529.1_556419_558603_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NC_017529.1_558905_559184_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NC_017529.1_561234_561603_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NC_017529.1_561749_563165_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NC_017529.1_563296_564301_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NC_017529.1_564332_565649_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NC_017529.1_565850_566603_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NC_017529.1_566710_567154_+	NA	NA|554aa|down_6|NC_017529.1_567199_568861_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|247aa|down_7|NC_017529.1_568999_569740_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_8|NC_017529.1_569979_571455_+	NA	NA|499aa|down_9|NC_017529.1_571447_572944_+	COG5298, COG5298, Uncharacterized protein conserved in bacteria [Function unknown]
