assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	1	40606-40713	1	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TTTTGCCTCGTGGAATTATTCCGCAG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|411aa|up_2|NC_015500.1_33060_34293_+,NA|889aa|up_1|NC_015500.1_34294_36961_+,NA|1034aa|up_0|NC_015500.1_36974_40076_+,NA|231aa|down_0|NC_015500.1_40945_41638_+,NA|65aa|down_8|NC_015500.1_48351_48546_+	NA|524aa|up_9|NC_015500.1_18035_19607_-	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus	NA|493aa|up_8|NC_015500.1_19637_21116_-	PRK03643, PRK03643, tagaturonate reductase	NA|1113aa|up_7|NC_015500.1_21294_24633_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|310aa|up_6|NC_015500.1_24800_25730_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|301aa|up_5|NC_015500.1_25742_26645_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|523aa|up_4|NC_015500.1_26730_28299_+	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|925aa|up_3|NC_015500.1_30296_33071_+	pfam04773, FecR, FecR protein	NA|411aa|up_2|NC_015500.1_33060_34293_+	NA	NA|889aa|up_1|NC_015500.1_34294_36961_+	NA	NA|1034aa|up_0|NC_015500.1_36974_40076_+	NA	NA|231aa|down_0|NC_015500.1_40945_41638_+	NA	NA|251aa|down_1|NC_015500.1_41734_42487_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|172aa|down_2|NC_015500.1_42621_43137_+	cd10032, UDG-F6_HDG, Uracil DNA glycosylase family 6, includes hypoxanthine-DNA glycosylase and similar proteins	NA|292aa|down_3|NC_015500.1_43316_44192_+	cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies	NA|182aa|down_4|NC_015500.1_44196_44742_+	PRK09453, PRK09453, phosphodiesterase; Provisional	NA|153aa|down_5|NC_015500.1_44721_45180_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|494aa|down_6|NC_015500.1_45239_46721_-	cd06450, DOPA_deC_like, DOPA decarboxylase family	NA|454aa|down_7|NC_015500.1_46707_48069_-	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional	NA|65aa|down_8|NC_015500.1_48351_48546_+	NA	NA|300aa|down_9|NC_015500.1_48764_49664_+	COG2035, COG2035, Predicted membrane protein [Function unknown]
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	2	288326-288402	2	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GCGGTACGGGCATCCCCGGCGGT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|494aa|up_9|NC_015500.1_271961_273443_-,NA|343aa|up_8|NC_015500.1_273439_274468_-,NA|192aa|up_7|NC_015500.1_274584_275160_-,NA|198aa|up_4|NC_015500.1_281631_282225_+,NA	NA|494aa|up_9|NC_015500.1_271961_273443_-	NA	NA|343aa|up_8|NC_015500.1_273439_274468_-	NA	NA|192aa|up_7|NC_015500.1_274584_275160_-	NA	NA|426aa|up_6|NC_015500.1_275576_276854_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1431aa|up_5|NC_015500.1_276974_281267_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|198aa|up_4|NC_015500.1_281631_282225_+	NA	NA|393aa|up_3|NC_015500.1_282417_283596_-	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|316aa|up_2|NC_015500.1_283665_284613_-	cd05292, LDH_2, A subgroup of L-lactate dehydrogenases	NA|382aa|up_1|NC_015500.1_284779_285925_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|510aa|up_0|NC_015500.1_286145_287675_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|778aa|down_0|NC_015500.1_288760_291094_-	COG1306, COG1306, Uncharacterized conserved protein [Function unknown]	NA|518aa|down_1|NC_015500.1_291117_292671_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|341aa|down_2|NC_015500.1_292800_293823_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|691aa|down_3|NC_015500.1_293970_296043_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|603aa|down_4|NC_015500.1_296129_297938_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|126aa|down_5|NC_015500.1_297993_298371_-	cd00851, MTH1175, This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme	NA|193aa|down_6|NC_015500.1_298458_299037_-	pfam02659, Mntp, Putative manganese efflux pump	NA|339aa|down_7|NC_015500.1_299179_300196_+	cd06275, PBP1_PurR, ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli	NA|132aa|down_8|NC_015500.1_300277_300673_+	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|498aa|down_9|NC_015500.1_300686_302180_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	3	552606-552700	3	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GCGAGCTGCGGCGCATTCGCGCTTACCGGTGCCGC	35	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|428aa|up_3|NC_015500.1_548013_549297_-,NA|337aa|down_8|NC_015500.1_565603_566614_+	NA|377aa|up_9|NC_015500.1_540622_541753_-	pfam14307, Glyco_tran_WbsX, Glycosyltransferase WbsX	NA|406aa|up_8|NC_015500.1_541749_542967_-	pfam14897, EpsG, EpsG family	NA|372aa|up_7|NC_015500.1_542969_544085_-	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins	NA|377aa|up_6|NC_015500.1_544071_545202_-	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|579aa|up_5|NC_015500.1_545203_546940_-	cd07037, TPP_PYR_MenD, Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins	NA|353aa|up_4|NC_015500.1_546958_548017_-	cd05265, SDR_a1, atypical (a) SDRs, subgroup 1	NA|428aa|up_3|NC_015500.1_548013_549297_-	NA	NA|569aa|up_2|NC_015500.1_549348_551055_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|128aa|up_1|NC_015500.1_551267_551651_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|226aa|up_0|NC_015500.1_551687_552365_-	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|460aa|down_0|NC_015500.1_553987_555367_+	pfam06245, DUF1015, Protein of unknown function (DUF1015)	NA|512aa|down_1|NC_015500.1_555636_557172_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|347aa|down_2|NC_015500.1_557318_558359_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|285aa|down_3|NC_015500.1_558430_559285_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|415aa|down_4|NC_015500.1_559363_560608_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|299aa|down_5|NC_015500.1_560892_561789_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|705aa|down_6|NC_015500.1_561893_564008_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|510aa|down_7|NC_015500.1_564064_565594_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|337aa|down_8|NC_015500.1_565603_566614_+	NA	NA|244aa|down_9|NC_015500.1_566610_567342_+	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	4	575741-575815	4	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AGCCGCTGACGCTCCGCCGTCAG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|337aa|up_6|NC_015500.1_565603_566614_+,NA|364aa|down_8|NC_015500.1_588159_589251_+	NA|299aa|up_9|NC_015500.1_560892_561789_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|705aa|up_8|NC_015500.1_561893_564008_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|510aa|up_7|NC_015500.1_564064_565594_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|337aa|up_6|NC_015500.1_565603_566614_+	NA	NA|244aa|up_5|NC_015500.1_566610_567342_+	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|501aa|up_4|NC_015500.1_567517_569020_+	PRK05326, PRK05326, potassium/proton antiporter	NA|654aa|up_3|NC_015500.1_569049_571011_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|266aa|up_2|NC_015500.1_571110_571908_-	cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis	NA|290aa|up_1|NC_015500.1_571999_572869_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|282aa|up_0|NC_015500.1_573108_573954_+	pfam02588, YitT_membrane, Uncharacterized 5xTM membrane BCR, YitT family COG1284	NA|343aa|down_0|NC_015500.1_576054_577083_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|313aa|down_1|NC_015500.1_577312_578251_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|305aa|down_2|NC_015500.1_578263_579178_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|474aa|down_3|NC_015500.1_579217_580639_+	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|786aa|down_4|NC_015500.1_580739_583097_+	cd10791, GH38N_AMII_like_1, N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38)	NA|593aa|down_5|NC_015500.1_583222_585001_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|528aa|down_6|NC_015500.1_585372_586956_+	PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional	NA|372aa|down_7|NC_015500.1_586952_588068_+	cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in  bacterial endospore germination	NA|364aa|down_8|NC_015500.1_588159_589251_+	NA	NA|270aa|down_9|NC_015500.1_589417_590227_-	pfam01694, Rhomboid, Rhomboid family
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	5	837281-837356	5	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GTCTTTTTCGTCCGACACGCCGACG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|148aa|down_1|NC_015500.1_841700_842144_+	NA|139aa|up_9|NC_015500.1_822284_822701_+	COG4747, COG4747, ACT domain-containing protein [General function prediction only]	NA|337aa|up_8|NC_015500.1_822688_823699_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|348aa|up_7|NC_015500.1_823709_824753_-	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|367aa|up_6|NC_015500.1_825159_826260_+	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type	NA|502aa|up_5|NC_015500.1_826250_827756_+	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|171aa|up_4|NC_015500.1_827770_828283_+	cd10563, CooF_like, CooF, iron-sulfur subunit of carbon monoxide dehydrogenase	NA|423aa|up_3|NC_015500.1_828279_829548_+	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|255aa|up_2|NC_015500.1_829550_830315_+	cd00981, arch_gltB, Archaeal-type gltB domain	NA|613aa|up_1|NC_015500.1_830355_832194_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|1300aa|up_0|NC_015500.1_832265_836165_-	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|688aa|down_0|NC_015500.1_839621_841685_+	cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit	NA|148aa|down_1|NC_015500.1_841700_842144_+	NA	NA|579aa|down_2|NC_015500.1_842252_843989_+	cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)	NA|899aa|down_3|NC_015500.1_844149_846846_+	cd11341, AmyAc_Pullulanase_LD-like, Alpha amylase catalytic domain found in Pullulanase (also called dextrinase; alpha-dextrin endo-1,6-alpha glucosidase), limit dextrinase, and related proteins	NA|397aa|down_4|NC_015500.1_846917_848108_+	cd13586, PBP2_Maltose_binding_like, The periplasmic-binding component of ABC transport systems specific for maltose and related polysaccharides; possess type 2 periplasmic binding fold	NA|461aa|down_5|NC_015500.1_848227_849610_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|286aa|down_6|NC_015500.1_849666_850524_+	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]	NA|554aa|down_7|NC_015500.1_850529_852191_+	cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)	NA|424aa|down_8|NC_015500.1_852337_853609_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|190aa|down_9|NC_015500.1_853617_854187_+	pfam03861, ANTAR, ANTAR domain
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	6	862095-862243	6	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CACCACCAGCAACCGGCGCCGCCGTCTTTGGCCAACGCGCGTCGTATACG	50	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|61aa|up_7|NC_015500.1_854231_854414_-,NA|104aa|down_1|NC_015500.1_863578_863890_+	NA|424aa|up_9|NC_015500.1_852337_853609_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|190aa|up_8|NC_015500.1_853617_854187_+	pfam03861, ANTAR, ANTAR domain	NA|61aa|up_7|NC_015500.1_854231_854414_-	NA	NA|230aa|up_6|NC_015500.1_854397_855087_+	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]	NA|577aa|up_5|NC_015500.1_855316_857047_+	PRK09431, asnB, asparagine synthetase B; Provisional	NA|317aa|up_4|NC_015500.1_857329_858280_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|322aa|up_3|NC_015500.1_858273_859239_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|248aa|up_2|NC_015500.1_859298_860042_+	TIGR01830, 3-oxoacyl-_reductase_FabG, 3-oxoacyl-(acyl-carrier-protein) reductase	NA|415aa|up_1|NC_015500.1_860119_861364_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|144aa|up_0|NC_015500.1_861381_861813_+	cd01288, FabZ, FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway	NA|311aa|down_0|NC_015500.1_862413_863346_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|104aa|down_1|NC_015500.1_863578_863890_+	NA	NA|445aa|down_2|NC_015500.1_863955_865290_+	pfam06889, DUF1266, Protein of unknown function (DUF1266)	NA|670aa|down_3|NC_015500.1_865293_867303_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|272aa|down_4|NC_015500.1_867384_868200_+	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|224aa|down_5|NC_015500.1_868288_868960_+	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|3574aa|down_6|NC_015500.1_869150_879872_+	PRK08026, PRK08026, FliC/FljB family flagellin	NA|265aa|down_7|NC_015500.1_879936_880731_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|303aa|down_8|NC_015500.1_880724_881633_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|298aa|down_9|NC_015500.1_881802_882696_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	7	1062563-1062655	7	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GGCCGCTTGCGTATCGGCGGCCTG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|339aa|up_6|NC_015500.1_1050253_1051270_+,NA|348aa|down_0|NC_015500.1_1062846_1063890_-,NA|206aa|down_1|NC_015500.1_1063973_1064591_+,NA|482aa|down_7|NC_015500.1_1069647_1071093_-,NA|195aa|down_9|NC_015500.1_1072901_1073486_+	NA|374aa|up_9|NC_015500.1_1046694_1047816_-	TIGR01947, Electron_transport_complex_subunit_G, electron transport complex, RnfABCDGE type, G subunit	NA|323aa|up_8|NC_015500.1_1047812_1048781_-	pfam03116, NQR2_RnfD_RnfE, NQR2, RnfD, RnfE family	NA|447aa|up_7|NC_015500.1_1048781_1050122_-	TIGR01945, Electron_transport_complex_subunit_C, electron transport complex, RnfABCDGE type, C subunit	NA|339aa|up_6|NC_015500.1_1050253_1051270_+	NA	NA|1041aa|up_5|NC_015500.1_1051278_1054401_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|410aa|up_4|NC_015500.1_1054588_1055818_+	cd01948, EAL, EAL domain	NA|460aa|up_3|NC_015500.1_1055826_1057206_+	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|486aa|up_2|NC_015500.1_1057243_1058701_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|363aa|up_1|NC_015500.1_1058843_1059932_-	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|470aa|up_0|NC_015500.1_1060165_1061575_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|348aa|down_0|NC_015500.1_1062846_1063890_-	NA	NA|206aa|down_1|NC_015500.1_1063973_1064591_+	NA	NA|582aa|down_2|NC_015500.1_1064593_1066339_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|53aa|down_3|NC_015500.1_1066425_1066584_+	cd00730, rubredoxin, Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center	NA|411aa|down_4|NC_015500.1_1066669_1067902_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|235aa|down_5|NC_015500.1_1067894_1068599_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|325aa|down_6|NC_015500.1_1068603_1069578_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|482aa|down_7|NC_015500.1_1069647_1071093_-	NA	NA|543aa|down_8|NC_015500.1_1071273_1072902_+	PRK05380, pyrG, CTP synthetase; Validated	NA|195aa|down_9|NC_015500.1_1072901_1073486_+	NA
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	8	1792543-1792644	8	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	ACGGCGGACGCTGCAACGTTTGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|242aa|up_6|NC_015500.1_1786271_1786997_+,NA|288aa|up_2|NC_015500.1_1789927_1790791_+,NA|290aa|down_0|NC_015500.1_1795900_1796770_+,NA|311aa|down_6|NC_015500.1_1802966_1803899_-	NA|176aa|up_9|NC_015500.1_1782621_1783149_-	TIGR03546, TIGR03546, TIGR03546 family protein	NA|489aa|up_8|NC_015500.1_1783200_1784667_-	cd03791, GT5_Glycogen_synthase_DULL1-like, Glycogen synthase GlgA and similar proteins	NA|411aa|up_7|NC_015500.1_1784751_1785984_-	PRK06836, PRK06836, pyridoxal phosphate-dependent aminotransferase	NA|242aa|up_6|NC_015500.1_1786271_1786997_+	NA	NA|370aa|up_5|NC_015500.1_1787001_1788111_+	cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose	NA|406aa|up_4|NC_015500.1_1788136_1789354_+	COG2089, SpsE, Sialic acid synthase [Cell envelope biogenesis, outer membrane]	NA|155aa|up_3|NC_015500.1_1789460_1789925_+	pfam01668, SmpB, SmpB protein	NA|288aa|up_2|NC_015500.1_1789927_1790791_+	NA	NA|194aa|up_1|NC_015500.1_1790801_1791383_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|175aa|up_0|NC_015500.1_1791379_1791904_-	pfam04977, DivIC, Septum formation initiator	NA|290aa|down_0|NC_015500.1_1795900_1796770_+	NA	NA|518aa|down_1|NC_015500.1_1796775_1798329_+	pfam01973, MAF_flag10, Protein of unknown function DUF115	NA|512aa|down_2|NC_015500.1_1798325_1799861_+	pfam01973, MAF_flag10, Protein of unknown function DUF115	NA|445aa|down_3|NC_015500.1_1799850_1801185_+	COG2199, COG2199, c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]	NA|216aa|down_4|NC_015500.1_1801201_1801849_-	sd00006, TPR, Tetratricopeptide repeat	NA|358aa|down_5|NC_015500.1_1801857_1802931_-	COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|311aa|down_6|NC_015500.1_1802966_1803899_-	NA	NA|1066aa|down_7|NC_015500.1_1803885_1807083_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|289aa|down_8|NC_015500.1_1807213_1808080_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|188aa|down_9|NC_015500.1_1808096_1808660_-	PRK04182, PRK04182, cytidylate kinase; Provisional
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	9	1854568-1854691	9	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TCGACCGGGACATCCGGAGCGGCGGCTGTTTCCG	34	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|114aa|down_0|NC_015500.1_1855258_1855600_-,NA|258aa|down_3|NC_015500.1_1859847_1860621_-,NA|110aa|down_5|NC_015500.1_1861853_1862183_+	NA|518aa|up_9|NC_015500.1_1840613_1842167_-	cd13584, PBP2_AlgQ1_2, Periplasmic-binding component of alginate-specific ABC uptake system; contains the type 2 periplasmic binding fold	NA|293aa|up_8|NC_015500.1_1842197_1843076_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|304aa|up_7|NC_015500.1_1843120_1844032_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|282aa|up_6|NC_015500.1_1844158_1845004_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|463aa|up_5|NC_015500.1_1845165_1846554_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|266aa|up_4|NC_015500.1_1846558_1847356_+	PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|653aa|up_3|NC_015500.1_1847381_1849340_+	COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]	NA|329aa|up_2|NC_015500.1_1849351_1850338_+	cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases	NA|261aa|up_1|NC_015500.1_1850397_1851180_+	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|695aa|up_0|NC_015500.1_1851302_1853387_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|114aa|down_0|NC_015500.1_1855258_1855600_-	NA	NA|978aa|down_1|NC_015500.1_1855586_1858520_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|386aa|down_2|NC_015500.1_1858670_1859828_-	pfam13729, TraF_2, F plasmid transfer operon, TraF, protein	NA|258aa|down_3|NC_015500.1_1859847_1860621_-	NA	NA|296aa|down_4|NC_015500.1_1860765_1861653_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|110aa|down_5|NC_015500.1_1861853_1862183_+	NA	NA|185aa|down_6|NC_015500.1_1862158_1862713_+	cd01828, sialate_O-acetylesterase_like2, sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases	NA|120aa|down_7|NC_015500.1_1862739_1863099_+	PRK11770, PRK11770, YccF domain-containing protein	NA|450aa|down_8|NC_015500.1_1863581_1864931_+	PRK01490, tig, trigger factor; Provisional	NA|201aa|down_9|NC_015500.1_1864979_1865582_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	10	1883874-1883976	10	CRISPRCasFinder	no	DEDDh	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Unclear	CGCCGTTTTGCAAAATAGAGGAACGCGCCG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|203aa|up_1|NC_015500.1_1880870_1881479_+,NA	NA|372aa|up_9|NC_015500.1_1866862_1867978_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|389aa|up_8|NC_015500.1_1868025_1869192_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|262aa|up_7|NC_015500.1_1869194_1869980_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|878aa|up_6|NC_015500.1_1870040_1872674_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|174aa|up_5|NC_015500.1_1872682_1873204_-	pfam03938, OmpH, Outer membrane protein (OmpH-like)	NA|809aa|up_4|NC_015500.1_1873215_1875642_-	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein	NA|1490aa|up_3|NC_015500.1_1875654_1880124_-	pfam04357, TamB, TamB, inner membrane protein subunit of TAM complex	NA|209aa|up_2|NC_015500.1_1880175_1880802_+	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]	NA|203aa|up_1|NC_015500.1_1880870_1881479_+	NA	NA|387aa|up_0|NC_015500.1_1881488_1882649_+	cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis	NA|530aa|down_0|NC_015500.1_1883982_1885572_-	cd10792, GH57N_AmyC_like, N-terminal catalytic domain of  alpha-amylase ( AmyC ) and similar proteins	NA|222aa|down_1|NC_015500.1_1885586_1886252_-	pfam16258, DUF4912, Domain of unknown function (DUF4912)	NA|591aa|down_2|NC_015500.1_1886520_1888293_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	DEDDh|187aa|down_3|NC_015500.1_1888279_1888840_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|310aa|down_4|NC_015500.1_1888857_1889787_-	TIGR02393, RNA_polymerase_sigma_factor_RpoD, RNA polymerase sigma factor RpoD, C-terminal domain	NA|285aa|down_5|NC_015500.1_1889974_1890829_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|423aa|down_6|NC_015500.1_1890863_1892132_-	pfam13023, HD_3, HD domain	NA|255aa|down_7|NC_015500.1_1892151_1892916_-	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|219aa|down_8|NC_015500.1_1892981_1893638_-	pfam04347, FliO, Flagellar biosynthesis protein, FliO	NA|397aa|down_9|NC_015500.1_1893764_1894955_-	PRK08119, PRK08119, flagellar motor switch protein; Validated
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	11	1895989-1896087	11	CRISPRCasFinder	no	DEDDh	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Unclear	ATCCCCTAATTCACGAAAGGCTGCGTTTTGT	31	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA	NA|222aa|up_9|NC_015500.1_1885586_1886252_-	pfam16258, DUF4912, Domain of unknown function (DUF4912)	NA|591aa|up_8|NC_015500.1_1886520_1888293_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	DEDDh|187aa|up_7|NC_015500.1_1888279_1888840_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|310aa|up_6|NC_015500.1_1888857_1889787_-	TIGR02393, RNA_polymerase_sigma_factor_RpoD, RNA polymerase sigma factor RpoD, C-terminal domain	NA|285aa|up_5|NC_015500.1_1889974_1890829_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|423aa|up_4|NC_015500.1_1890863_1892132_-	pfam13023, HD_3, HD domain	NA|255aa|up_3|NC_015500.1_1892151_1892916_-	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|219aa|up_2|NC_015500.1_1892981_1893638_-	pfam04347, FliO, Flagellar biosynthesis protein, FliO	NA|397aa|up_1|NC_015500.1_1893764_1894955_-	PRK08119, PRK08119, flagellar motor switch protein; Validated	NA|345aa|up_0|NC_015500.1_1894947_1895982_-	PRK06666, fliM, flagellar motor switch protein FliM; Validated	NA|182aa|down_0|NC_015500.1_1896118_1896664_-	PRK06654, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|237aa|down_1|NC_015500.1_1896696_1897407_-	PRK06667, motB, flagellar motor protein MotB; Validated	NA|261aa|down_2|NC_015500.1_1897419_1898202_-	COG1291, MotA, Flagellar motor component [Cell motility and secretion]	NA|66aa|down_3|NC_015500.1_1898222_1898420_-	pfam06289, FlbD, Flagellar protein (FlbD)	NA|464aa|down_4|NC_015500.1_1898772_1900164_-	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|147aa|down_5|NC_015500.1_1900176_1900617_-	PRK09618, flgD, flagellar hook assembly protein FlgD	NA|448aa|down_6|NC_015500.1_1900685_1902029_-	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|217aa|down_7|NC_015500.1_1902183_1902834_+	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional	NA|360aa|down_8|NC_015500.1_1902836_1903916_+	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|344aa|down_9|NC_015500.1_1903964_1904996_+	cd07743, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	12	1982817-1982922	12	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CGCTTTCGGGGCGGAAGCCCTTATCGGGTAACAGGCGGCC	40	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA	NA|287aa|up_9|NC_015500.1_1969860_1970721_-	PRK07105, PRK07105, pyridoxamine kinase; Validated	NA|510aa|up_8|NC_015500.1_1970825_1972355_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|496aa|up_7|NC_015500.1_1972481_1973969_-	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap	NA|553aa|up_6|NC_015500.1_1974088_1975747_+	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism]	NA|475aa|up_5|NC_015500.1_1975813_1977238_-	cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like	NA|408aa|up_4|NC_015500.1_1977382_1978606_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|231aa|up_3|NC_015500.1_1978598_1979291_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|413aa|up_2|NC_015500.1_1979540_1980779_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|306aa|up_1|NC_015500.1_1980976_1981894_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|278aa|up_0|NC_015500.1_1981898_1982732_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|254aa|down_0|NC_015500.1_1982996_1983758_-	cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like	NA|552aa|down_1|NC_015500.1_1983747_1985403_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|339aa|down_2|NC_015500.1_1985416_1986433_-	cd13545, PBP2_TbpA, Substrate binding domain of thiamin transporter, a member of the type 2 periplasmic binding fold superfamily	NA|199aa|down_3|NC_015500.1_1986730_1987327_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|467aa|down_4|NC_015500.1_1987336_1988737_+	cd11353, AmyAc_euk_bac_CMD_like, Alpha amylase catalytic domain found in eukaryotic and bacterial cyclomaltodextrinases and related proteins	NA|416aa|down_5|NC_015500.1_1988890_1990138_-	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit	NA|689aa|down_6|NC_015500.1_1990290_1992357_-	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated	NA|81aa|down_7|NC_015500.1_1992374_1992617_-	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain	NA|260aa|down_8|NC_015500.1_1992777_1993557_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|449aa|down_9|NC_015500.1_1993553_1994900_-	PLN02551, PLN02551, aspartokinase
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	13	2559775-2559870	13	CRISPRCasFinder	no	cas2,cas1,cas4	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Unclear	GTTGTTCTCACAAGGTATCGCAGTC	25	0	0	NA	NA	NA	1	1	Unclear	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|175aa|up_6|NC_015500.1_2549569_2550094_+,NA|186aa|up_4|NC_015500.1_2553457_2554015_+,NA|51aa|down_9|NC_015500.1_2568038_2568191_-	NA|420aa|up_9|NC_015500.1_2545600_2546860_-	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|563aa|up_8|NC_015500.1_2547065_2548754_-	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like	NA|104aa|up_7|NC_015500.1_2549048_2549360_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|175aa|up_6|NC_015500.1_2549569_2550094_+	NA	NA|989aa|up_5|NC_015500.1_2550261_2553228_+	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin	NA|186aa|up_4|NC_015500.1_2553457_2554015_+	NA	NA|94aa|up_3|NC_015500.1_2554374_2554656_+	PRK07478, PRK07478, short chain dehydrogenase; Provisional	NA|164aa|up_2|NC_015500.1_2554639_2555131_+	cd05233, SDR_c, classical (c) SDRs	NA|459aa|up_1|NC_015500.1_2557277_2558654_-	cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM	NA|306aa|up_0|NC_015500.1_2558796_2559714_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|217aa|down_0|NC_015500.1_2559927_2560578_-	pfam02589, LUD_dom, LUD domain	NA|329aa|down_1|NC_015500.1_2560770_2561757_+	cd13672, PBP2_TRAP_Siap, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP); the type 2 periplasmic-binding protein fold	NA|158aa|down_2|NC_015500.1_2561862_2562336_+	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|426aa|down_3|NC_015500.1_2562338_2563616_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|150aa|down_4|NC_015500.1_2563694_2564144_+	pfam04074, DUF386, Domain of unknown function (DUF386)	NA|272aa|down_5|NC_015500.1_2564145_2564961_-	pfam01026, TatD_DNase, TatD related DNase	NA|346aa|down_6|NC_015500.1_2565189_2566227_+	COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|284aa|down_7|NC_015500.1_2566223_2567075_+	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_8|NC_015500.1_2567262_2568060_+	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|51aa|down_9|NC_015500.1_2568038_2568191_-	NA
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	14	2568752-2577023	14,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-U, Type I-U?,Type I-C	GTTTCAATCCACGCTCCCGTGAAGGGAGCGAC,GTTTCAATCCACGCTCCCGTGAAGGGAGCGAC,GTTTCAATCCACGCTCCCGTGAAGGGAGCGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	127,127,60	127	TypeI-U,TypeI-C,TypeI-U?	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|51aa|up_0|NC_015500.1_2568038_2568191_-,NA|92aa|down_9|NC_015500.1_2591349_2591625_+	NA|217aa|up_9|NC_015500.1_2559927_2560578_-	pfam02589, LUD_dom, LUD domain	NA|329aa|up_8|NC_015500.1_2560770_2561757_+	cd13672, PBP2_TRAP_Siap, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP); the type 2 periplasmic-binding protein fold	NA|158aa|up_7|NC_015500.1_2561862_2562336_+	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|426aa|up_6|NC_015500.1_2562338_2563616_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|150aa|up_5|NC_015500.1_2563694_2564144_+	pfam04074, DUF386, Domain of unknown function (DUF386)	NA|272aa|up_4|NC_015500.1_2564145_2564961_-	pfam01026, TatD_DNase, TatD related DNase	NA|346aa|up_3|NC_015500.1_2565189_2566227_+	COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|284aa|up_2|NC_015500.1_2566223_2567075_+	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|up_1|NC_015500.1_2567262_2568060_+	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|51aa|up_0|NC_015500.1_2568038_2568191_-	NA	cas2|96aa|down_0|NC_015500.1_2577242_2577530_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NC_015500.1_2577534_2578566_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|215aa|down_2|NC_015500.1_2578562_2579207_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas7|281aa|down_3|NC_015500.1_2579210_2580053_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|615aa|down_4|NC_015500.1_2580054_2581899_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|228aa|down_5|NC_015500.1_2581895_2582579_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|822aa|down_6|NC_015500.1_2582606_2585072_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|130aa|down_7|NC_015500.1_2590073_2590463_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|180aa|down_8|NC_015500.1_2590634_2591174_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|92aa|down_9|NC_015500.1_2591349_2591625_+	NA
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	15	2585593-2590043	2,15,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-U, Type I-U?,Type I-C	GTTTCAATCCACGCTCCCGTGAAGGGAGCGAC,GTCGCTCCCTTCACGGGAGCGTGGATTGAAAC,GTCGCTCCCTTCACGGGAGCGTGGATTGAAAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	68,68,68	68	TypeI-U,TypeI-C,TypeI-U?	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|51aa|up_7|NC_015500.1_2568038_2568191_-,NA|92aa|down_2|NC_015500.1_2591349_2591625_+,NA|118aa|down_4|NC_015500.1_2593809_2594163_-	NA|284aa|up_9|NC_015500.1_2566223_2567075_+	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|up_8|NC_015500.1_2567262_2568060_+	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|51aa|up_7|NC_015500.1_2568038_2568191_-	NA	cas2|96aa|up_6|NC_015500.1_2577242_2577530_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|up_5|NC_015500.1_2577534_2578566_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|215aa|up_4|NC_015500.1_2578562_2579207_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas7|281aa|up_3|NC_015500.1_2579210_2580053_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|615aa|up_2|NC_015500.1_2580054_2581899_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|228aa|up_1|NC_015500.1_2581895_2582579_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|822aa|up_0|NC_015500.1_2582606_2585072_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|130aa|down_0|NC_015500.1_2590073_2590463_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|180aa|down_1|NC_015500.1_2590634_2591174_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|92aa|down_2|NC_015500.1_2591349_2591625_+	NA	NA|449aa|down_3|NC_015500.1_2592270_2593617_-	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|118aa|down_4|NC_015500.1_2593809_2594163_-	NA	NA|119aa|down_5|NC_015500.1_2594210_2594567_-	pfam08308, PEGA, PEGA domain	NA|107aa|down_6|NC_015500.1_2594704_2595025_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|284aa|down_7|NC_015500.1_2595031_2595883_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|267aa|down_8|NC_015500.1_2595879_2596680_-	cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis	NA|422aa|down_9|NC_015500.1_2596676_2597942_-	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	16	2638922-2639011	16	CRISPRCasFinder	no	csa3	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-A	GCAAACGTGCCGATATTTATACAAACCGTTG	31	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|135aa|up_2|NC_015500.1_2636347_2636752_+,NA|327aa|up_0|NC_015500.1_2637859_2638840_+,NA|153aa|down_9|NC_015500.1_2648851_2649310_-	NA|368aa|up_9|NC_015500.1_2628217_2629321_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|227aa|up_8|NC_015500.1_2629769_2630450_+	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional	NA|371aa|up_7|NC_015500.1_2630514_2631627_+	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|393aa|up_6|NC_015500.1_2631807_2632986_+	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|274aa|up_5|NC_015500.1_2633175_2633997_+	pfam01464, SLT, Transglycosylase SLT domain	NA|555aa|up_4|NC_015500.1_2634011_2635676_-	pfam18564, Glyco_hydro_5_C, Glycoside hydrolase family 5 C-terminal domain	NA|149aa|up_3|NC_015500.1_2635800_2636247_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|135aa|up_2|NC_015500.1_2636347_2636752_+	NA	NA|343aa|up_1|NC_015500.1_2636752_2637781_+	COG1313, PflX, Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]	NA|327aa|up_0|NC_015500.1_2637859_2638840_+	NA	NA|280aa|down_0|NC_015500.1_2639375_2640215_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|326aa|down_1|NC_015500.1_2640299_2641277_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|358aa|down_2|NC_015500.1_2641393_2642467_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|361aa|down_3|NC_015500.1_2642623_2643706_-	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|260aa|down_4|NC_015500.1_2643702_2644482_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|267aa|down_5|NC_015500.1_2644518_2645319_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|396aa|down_6|NC_015500.1_2645347_2646535_-	cd03825, GT4_WcaC-like, putative colanic acid biosynthesis glycosyl transferase WcaC and similar proteins	NA|239aa|down_7|NC_015500.1_2646539_2647256_-	cd10967, CE4_GLA_like_6s, Putative catalytic NodB homology domain of gellan lyase and similar proteins	NA|406aa|down_8|NC_015500.1_2647533_2648751_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|153aa|down_9|NC_015500.1_2648851_2649310_-	NA
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	17	2657458-2657552	17	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CCGATCCATAAAACCGCCGGTTTGCACAGGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|153aa|up_5|NC_015500.1_2648851_2649310_-,NA|604aa|down_6|NC_015500.1_2663878_2665690_-,NA|310aa|down_7|NC_015500.1_2665686_2666616_-	NA|267aa|up_9|NC_015500.1_2644518_2645319_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|396aa|up_8|NC_015500.1_2645347_2646535_-	cd03825, GT4_WcaC-like, putative colanic acid biosynthesis glycosyl transferase WcaC and similar proteins	NA|239aa|up_7|NC_015500.1_2646539_2647256_-	cd10967, CE4_GLA_like_6s, Putative catalytic NodB homology domain of gellan lyase and similar proteins	NA|406aa|up_6|NC_015500.1_2647533_2648751_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|153aa|up_5|NC_015500.1_2648851_2649310_-	NA	NA|176aa|up_4|NC_015500.1_2649540_2650068_-	COG0250, NusG, Transcription antiterminator [Transcription]	NA|241aa|up_3|NC_015500.1_2650121_2650844_-	PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated	NA|88aa|up_2|NC_015500.1_2650988_2651252_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|683aa|up_1|NC_015500.1_2651409_2653458_+	pfam02446, Glyco_hydro_77, 4-alpha-glucanotransferase	NA|1270aa|up_0|NC_015500.1_2653592_2657402_+	cd11347, AmyAc_1, Alpha amylase catalytic domain found in an uncharacterized protein family	NA|437aa|down_0|NC_015500.1_2657678_2658989_-	PRK09225, PRK09225, threonine synthase; Validated	NA|306aa|down_1|NC_015500.1_2659036_2659954_-	COG4866, COG4866, Uncharacterized conserved protein [Function unknown]	NA|432aa|down_2|NC_015500.1_2660146_2661442_+	PRK05469, PRK05469, tripeptide aminopeptidase PepT	NA|81aa|down_3|NC_015500.1_2661509_2661752_+	pfam12637, TSCPD, TSCPD domain	NA|432aa|down_4|NC_015500.1_2661744_2663040_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|252aa|down_5|NC_015500.1_2663130_2663886_-	PRK09430, djlA, co-chaperone DjlA	NA|604aa|down_6|NC_015500.1_2663878_2665690_-	NA	NA|310aa|down_7|NC_015500.1_2665686_2666616_-	NA	NA|184aa|down_8|NC_015500.1_2666939_2667491_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|245aa|down_9|NC_015500.1_2667611_2668346_-	cd05233, SDR_c, classical (c) SDRs
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	18	2727193-2727280	18	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	ATGCCGGCGTGCTTTCGTCTGCCGGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|54aa|down_3|NC_015500.1_2732794_2732956_+	NA|60aa|up_9|NC_015500.1_2714618_2714798_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|58aa|up_8|NC_015500.1_2714929_2715103_-	PRK00595, rpmG, 50S ribosomal protein L33; Validated	NA|283aa|up_7|NC_015500.1_2715432_2716281_+	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase	NA|413aa|up_6|NC_015500.1_2716309_2717548_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|82aa|up_5|NC_015500.1_2717996_2718242_+	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)	NA|585aa|up_4|NC_015500.1_2718238_2719993_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|413aa|up_3|NC_015500.1_2719989_2721228_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|85aa|up_2|NC_015500.1_2721419_2721674_+	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]	NA|492aa|up_1|NC_015500.1_2721811_2723287_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|892aa|up_0|NC_015500.1_2723593_2726269_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|410aa|down_0|NC_015500.1_2727404_2728634_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|331aa|down_1|NC_015500.1_2728824_2729817_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|928aa|down_2|NC_015500.1_2729857_2732641_-	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain	NA|54aa|down_3|NC_015500.1_2732794_2732956_+	NA	NA|375aa|down_4|NC_015500.1_2732948_2734073_+	pfam18164, GNAT_C, GNAT-like C-terminal domain	NA|214aa|down_5|NC_015500.1_2734141_2734783_-	PRK13189, PRK13189, peroxiredoxin; Provisional	NA|166aa|down_6|NC_015500.1_2734993_2735491_-	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional	NA|284aa|down_7|NC_015500.1_2735616_2736468_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|287aa|down_8|NC_015500.1_2736730_2737591_+	PRK06222, PRK06222, sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein	NA|500aa|down_9|NC_015500.1_2737587_2739087_+	PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	19	2770300-2770391	19	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GATGGGCGGGCTGAAAGGCTGACGGTTATCCC	32	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|343aa|up_5|NC_015500.1_2761909_2762938_-,NA	NA|147aa|up_9|NC_015500.1_2759039_2759480_+	pfam04519, Bactofilin, Polymer-forming cytoskeletal	NA|178aa|up_8|NC_015500.1_2759466_2760000_+	pfam03885, DUF327, Protein of unknown function (DUF327)	NA|311aa|up_7|NC_015500.1_2760023_2760956_+	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|245aa|up_6|NC_015500.1_2761053_2761788_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|343aa|up_5|NC_015500.1_2761909_2762938_-	NA	NA|466aa|up_4|NC_015500.1_2763167_2764565_+	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|368aa|up_3|NC_015500.1_2764684_2765788_-	pfam01636, APH, Phosphotransferase enzyme family	NA|316aa|up_2|NC_015500.1_2765870_2766818_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|461aa|up_1|NC_015500.1_2766976_2768359_+	TIGR03850, ABC_transporter_substrate-binding_protein, carbohydrate ABC transporter substrate-binding protein, CPR_0540 family	NA|293aa|up_0|NC_015500.1_2768520_2769399_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|720aa|down_0|NC_015500.1_2770466_2772626_+	TIGR02336, hypothetical_protein_BL1641, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase	NA|400aa|down_1|NC_015500.1_2772801_2774001_+	PRK13758, PRK13758, anaerobic sulfatase-maturase; Provisional	NA|487aa|down_2|NC_015500.1_2774009_2775470_-	PRK13759, PRK13759, arylsulfatase; Provisional	NA|372aa|down_3|NC_015500.1_2775612_2776728_+	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]	NA|515aa|down_4|NC_015500.1_2776744_2778289_-	pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22	NA|120aa|down_5|NC_015500.1_2778285_2778645_-	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators	NA|498aa|down_6|NC_015500.1_2778644_2780138_-	TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA	NA|568aa|down_7|NC_015500.1_2780240_2781944_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|432aa|down_8|NC_015500.1_2782108_2783404_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|437aa|down_9|NC_015500.1_2783422_2784733_+	pfam00815, Histidinol_dh, Histidinol dehydrogenase
GCF_000212415.1_ASM21241v1	NC_015500	Treponema brennaborense DSM 12168, complete sequence	20	3050616-3050844	3	PILER-CR	no		cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TGTTTCA-----------CGTGAAACAA	28	0	0	NA	NA	NA	3	3	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|99aa|up_9|NC_015500.1_3039240_3039537_+,NA|560aa|up_6|NC_015500.1_3041933_3043613_-,NA	NA|99aa|up_9|NC_015500.1_3039240_3039537_+	NA	NA|427aa|up_8|NC_015500.1_3039626_3040907_+	TIGR00900, multidrug_transporter, H+ Antiporter protein	NA|332aa|up_7|NC_015500.1_3040919_3041915_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|560aa|up_6|NC_015500.1_3041933_3043613_-	NA	NA|287aa|up_5|NC_015500.1_3043994_3044855_+	COG3294, COG3294, HD supefamily hydrolase [General function prediction only]	NA|273aa|up_4|NC_015500.1_3044863_3045682_+	pfam02677, DUF208, Uncharacterized BCR, COG1636	NA|291aa|up_3|NC_015500.1_3045787_3046660_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|304aa|up_2|NC_015500.1_3046676_3047588_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|418aa|up_1|NC_015500.1_3047656_3048910_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|451aa|up_0|NC_015500.1_3049049_3050402_+	PRK05279, PRK05279, N-acetylglutamate synthase; Validated	NA|818aa|down_0|NC_015500.1_3051065_3053519_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|639aa|down_1|NC_015500.1_3053600_3055517_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
