assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000212715.2_ASM21271v2	NC_017641	Escherichia coli UMNK88, complete sequence	1	587367-587463	1	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14j,RT	NA,NA	NA|454aa|up_9|NC_017641.1_575147_576509_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NC_017641.1_576565_577867_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NC_017641.1_577888_579034_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NC_017641.1_579261_580047_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NC_017641.1_580057_581293_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NC_017641.1_581314_582364_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NC_017641.1_582680_584348_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NC_017641.1_584357_585617_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NC_017641.1_585627_586443_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NC_017641.1_586439_587333_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NC_017641.1_587527_588595_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NC_017641.1_588591_589101_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NC_017641.1_589218_589941_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NC_017641.1_589943_590438_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NC_017641.1_590611_591997_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NC_017641.1_592032_592554_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NC_017641.1_592661_592874_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NC_017641.1_592875_593742_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NC_017641.1_594212_594755_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NC_017641.1_594974_595667_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_000212715.2_ASM21271v2	NC_017641	Escherichia coli UMNK88, complete sequence	2	2699555-2699681	2	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14j,RT	NA,NA	NA|441aa|up_9|NC_017641.1_2677109_2678432_+	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|395aa|up_8|NC_017641.1_2678462_2679647_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_7|NC_017641.1_2679720_2680497_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_6|NC_017641.1_2680501_2682151_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1505aa|up_5|NC_017641.1_2682151_2686666_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|563aa|up_4|NC_017641.1_2687309_2688998_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NC_017641.1_2689146_2691774_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NC_017641.1_2691920_2692643_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NC_017641.1_2692770_2696523_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NC_017641.1_2697218_2699504_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NC_017641.1_2699737_2700868_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NC_017641.1_2700867_2701122_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NC_017641.1_2701175_2701826_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NC_017641.1_2702288_2703365_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NC_017641.1_2703369_2704728_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NC_017641.1_2705000_2706629_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NC_017641.1_2706618_2707878_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NC_017641.1_2707874_2709065_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NC_017641.1_2709257_2710157_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NC_017641.1_2710169_2710355_+	PRK09956, PRK09956, ISNCY family transposase
GCF_000212715.2_ASM21271v2	NC_017641	Escherichia coli UMNK88, complete sequence	3	3234694-3234838	3	CRISPRCasFinder	no	csa3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-A	CACAATGCCTGATGCGACGCTGGAGCGTCTTATCATGCCTACAAA	45	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14j,RT	NA,NA	NA|150aa|up_9|NC_017641.1_3225683_3226133_+	pfam06610, AlaE, L-alanine exporter	NA|115aa|up_8|NC_017641.1_3226169_3226514_-	PRK10556, PRK10556, hypothetical protein; Provisional	NA|110aa|up_7|NC_017641.1_3226665_3226995_+	PRK10132, PRK10132, hypothetical protein; Provisional	NA|82aa|up_6|NC_017641.1_3227242_3227488_+	PRK10329, PRK10329, glutaredoxin-like protein NrdH	NA|137aa|up_5|NC_017641.1_3227484_3227895_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|715aa|up_4|NC_017641.1_3227867_3230012_+	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|320aa|up_3|NC_017641.1_3230021_3230981_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|401aa|up_2|NC_017641.1_3231335_3232538_+	PRK10070, PRK10070, proline/glycine betaine ABC transporter ATP-binding protein ProV	NA|355aa|up_1|NC_017641.1_3232530_3233595_+	PRK10952, PRK10952, proline/glycine betaine ABC transporter permease ProW	NA|331aa|up_0|NC_017641.1_3233652_3234645_+	PRK11119, proX, proline/glycine betaine ABC transporter substrate-binding protein ProX	NA|395aa|down_0|NC_017641.1_3234936_3236121_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|246aa|down_1|NC_017641.1_3236244_3236982_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|112aa|down_2|NC_017641.1_3236971_3237307_+	PRK10408, PRK10408, L-valine transporter subunit YgaH	NA|177aa|down_3|NC_017641.1_3237397_3237928_+	PRK10870, PRK10870, transcriptional repressor MprA; Provisional	NA|391aa|down_4|NC_017641.1_3238054_3239227_+	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA|513aa|down_5|NC_017641.1_3239243_3240782_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|172aa|down_6|NC_017641.1_3240845_3241361_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|519aa|down_7|NC_017641.1_3241510_3243067_-	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional	NA|138aa|down_8|NC_017641.1_3243153_3243567_-	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|189aa|down_9|NC_017641.1_3243563_3244130_-	PRK10725, PRK10725, fructose-1-phosphate/6-phosphogluconate phosphatase
GCF_000212715.2_ASM21271v2	NC_017641	Escherichia coli UMNK88, complete sequence	4	3304265-3305025	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,10	12	TypeI-E	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14j,RT	NA,NA	NA|254aa|up_9|NC_017641.1_3296138_3296900_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_017641.1_3296880_3297930_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_017641.1_3297926_3298406_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_017641.1_3298405_3299116_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_017641.1_3299134_3299446_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_017641.1_3299639_3299963_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_017641.1_3300012_3300618_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NC_017641.1_3300617_3302045_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_017641.1_3302046_3302955_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NC_017641.1_3303206_3304244_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NC_017641.1_3305130_3305415_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NC_017641.1_3305416_3306334_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NC_017641.1_3306349_3306949_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NC_017641.1_3306935_3307610_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NC_017641.1_3307612_3308704_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NC_017641.1_3308716_3309199_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NC_017641.1_3309191_3310700_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NC_017641.1_3311114_3313781_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NC_017641.1_3314138_3314873_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NC_017641.1_3314946_3316659_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_000212715.2_ASM21271v2	NC_017641	Escherichia coli UMNK88, complete sequence	5	3330573-3331089	2,2,5	CRT,PILER-CR,CRISPRCasFinder	no	cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,28,28	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Unclear	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14j,RT	NA,NA|47aa|down_1|NC_017641.1_3332238_3332379_+	NA|424aa|up_9|NC_017641.1_3319216_3320488_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NC_017641.1_3320478_3320739_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NC_017641.1_3320755_3321331_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NC_017641.1_3321478_3322339_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NC_017641.1_3322335_3323115_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NC_017641.1_3323092_3324502_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NC_017641.1_3324523_3325978_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NC_017641.1_3326047_3326833_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NC_017641.1_3327151_3328429_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NC_017641.1_3328455_3329934_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NC_017641.1_3331428_3332100_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NC_017641.1_3332238_3332379_+	NA	NA|291aa|down_2|NC_017641.1_3332392_3333265_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NC_017641.1_3333324_3334623_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NC_017641.1_3334710_3336348_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NC_017641.1_3336575_3337367_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NC_017641.1_3337437_3337773_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NC_017641.1_3337772_3338021_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NC_017641.1_3338098_3340333_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NC_017641.1_3340380_3341682_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_000212715.2_ASM21271v2	NC_017641	Escherichia coli UMNK88, complete sequence	6	5077218-5077367	6	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14j,RT	NA|627aa|up_5|NC_017641.1_5068240_5070121_+,NA	NA|132aa|up_9|NC_017641.1_5065617_5066013_-	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|238aa|up_8|NC_017641.1_5066143_5066857_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_7|NC_017641.1_5066927_5067521_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_6|NC_017641.1_5067665_5068118_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|627aa|up_5|NC_017641.1_5068240_5070121_+	NA	NA|335aa|up_4|NC_017641.1_5070176_5071181_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_3|NC_017641.1_5071342_5071759_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_2|NC_017641.1_5071804_5072308_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|952aa|up_1|NC_017641.1_5073751_5076607_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NC_017641.1_5076606_5077050_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NC_017641.1_5077403_5078915_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NC_017641.1_5079181_5080282_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NC_017641.1_5080281_5081364_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|510aa|down_3|NC_017641.1_5081498_5083028_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NC_017641.1_5083155_5084175_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|384aa|down_5|NC_017641.1_5086173_5087325_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|666aa|down_6|NC_017641.1_5088422_5090420_-	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|380aa|down_7|NC_017641.1_5090573_5091713_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|315aa|down_8|NC_017641.1_5091893_5092838_-	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|317aa|down_9|NC_017641.1_5092902_5093853_-	pfam04393, DUF535, Protein of unknown function (DUF535)
