The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_015572	Methylomonas methanica MC09, complete sequence	5051681	349157	404140	5051681	transposase	Tupanvirus(16.67%)	50	NA	NA
WP_085983705.1|349157_350736_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_013817046.1|351920_352991_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_041364898.1|353060_353639_+	suppressor of fused domain protein	NA	NA	NA	NA	NA
WP_013817048.1|353875_354331_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_173363145.1|354345_355026_-	suppressor of fused domain protein	NA	NA	NA	NA	NA
WP_013817050.1|355012_355780_-	LRV FeS4 cluster domain-containing protein	NA	NA	NA	NA	NA
WP_013817051.1|355782_356337_-	flavodoxin	NA	NA	NA	NA	NA
WP_013817052.1|356718_357717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817053.1|357717_358923_-	tryptophan 7-halogenase	NA	NA	NA	NA	NA
WP_013817054.1|358946_359366_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_013817055.1|359426_360167_-	beta-ketoacyl synthase chain length factor	NA	NA	NA	NA	NA
WP_013817056.1|360166_361369_-	beta-ketoacyl-ACP synthase	NA	NA	NA	NA	NA
WP_013817057.1|361365_363669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013817058.1|363672_364299_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
WP_013817059.1|364295_364916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013817060.1|364917_365181_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_013817061.1|365261_365810_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA	NA
WP_013817062.1|365860_366103_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_013817063.1|366099_367392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817064.1|367395_368823_+	AMP-binding protein	NA	A0A2K9L3I8	Tupanvirus	23.9	5.7e-23
WP_013817065.1|368900_369842_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
WP_013817066.1|369869_370979_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_013817067.1|371129_371507_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_013817068.1|371590_372673_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_013817069.1|372687_373704_-	threonine-phosphate decarboxylase	NA	NA	NA	NA	NA
WP_013817070.1|373696_374614_-	cobalamin biosynthesis protein	NA	NA	NA	NA	NA
WP_013817071.1|374652_375225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013817072.1|375241_377059_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	31.5	2.1e-06
WP_013817073.1|377547_378006_+	flagellar assembly protein FliW	NA	NA	NA	NA	NA
WP_013817074.1|378050_378431_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_013817075.1|378533_379382_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_013817076.1|379386_380196_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
WP_013817077.1|380192_380696_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_173363146.1|380692_382087_-	polynucleotide adenylyltransferase PcnB	NA	H7BUW3	unidentified_phage	35.1	1.9e-31
WP_013817079.1|382312_382492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148262059.1|382567_382972_+	RDD family protein	NA	NA	NA	NA	NA
WP_013817081.1|383024_383411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817082.1|383465_384533_-	TIGR03790 family protein	NA	NA	NA	NA	NA
WP_013817083.1|384659_385211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013817084.1|385510_386032_-	YcxB family protein	NA	NA	NA	NA	NA
WP_013817085.1|386057_387359_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013817086.1|387632_388166_+	septal ring lytic transglycosylase RlpA family protein	NA	A0A0F6SJ38	Sinorhizobium_phage	50.6	3.6e-15
WP_013817087.1|388463_389714_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
WP_013817088.1|389719_390547_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_013817089.1|390543_391230_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_013817090.1|391232_392138_+	tyrosine recombinase XerC	NA	A0A1B1P7C7	Bacillus_phage	31.2	2.2e-20
WP_013817091.1|399213_400734_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	24.9	2.7e-15
WP_013817092.1|400828_401329_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013817093.1|401325_402408_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_013817094.1|403024_404140_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_015572	Methylomonas methanica MC09, complete sequence	5051681	726029	779904	5051681	transposase,protease	Burkholderia_phage(16.67%)	56	NA	NA
WP_013817386.1|726029_726416_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	46.9	7.1e-29
WP_173363147.1|726412_727018_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_013817388.1|727187_727907_-	cytochrome c1	NA	NA	NA	NA	NA
WP_013817389.1|727910_729308_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_013817390.1|729304_729904_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_013817391.1|730040_731129_-	histidinol-phosphate transaminase	NA	NA	NA	NA	NA
WP_013817392.1|731372_732707_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_013817393.1|732878_733124_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_013817394.1|733107_733509_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_013817395.1|734815_736627_+|protease	serine protease	protease	NA	NA	NA	NA
WP_013817396.1|736623_738993_+|protease	serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	33.3	3.5e-09
WP_013817397.1|739083_739824_+	DUF4240 domain-containing protein	NA	NA	NA	NA	NA
WP_013817399.1|740270_740834_+	YfbM family protein	NA	NA	NA	NA	NA
WP_013817400.1|740851_741520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817401.1|741942_742395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085983707.1|742534_743765_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	69.9	9.3e-107
WP_013817404.1|744352_744664_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013817405.1|744638_744920_-	BrnT family toxin	NA	K4NX81	Burkholderia_phage	43.0	7.7e-09
WP_013817406.1|745575_745872_+	BrnA antitoxin family protein	NA	K4NZP3	Burkholderia_phage	46.0	1.3e-09
WP_013817407.1|746186_747488_-	histidinol dehydrogenase	NA	NA	NA	NA	NA
WP_013817408.1|747493_748120_-	ATP phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_013817409.1|748135_749401_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_013817410.1|749393_749741_-	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_013817411.1|749740_750205_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
WP_013817412.1|750206_750989_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA	NA
WP_013817413.1|751001_751820_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.0	1.2e-25
WP_041364982.1|751957_752938_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	35.8	5.6e-38
WP_013817415.1|752948_753482_+	HAD hydrolase family protein	NA	A0A140XBD6	Dickeya_phage	45.5	7.0e-27
WP_013817416.1|753478_754045_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_013817417.1|754031_754532_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_013817418.1|754533_755259_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.0	4.7e-26
WP_013817419.1|755272_756709_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_013817420.1|756750_757041_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_013817421.1|757094_757952_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	28.6	2.2e-06
WP_013817422.1|757988_759344_+	magnesium transporter	NA	NA	NA	NA	NA
WP_013817423.1|759420_760161_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_013817424.1|760182_760995_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_013817425.1|760994_761249_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_013817426.1|761329_761527_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013817427.1|761787_764631_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_013817428.1|764707_765604_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	38.5	3.2e-56
WP_013817429.1|765766_767107_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_013817430.1|767282_769286_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_013817431.1|769326_770454_-	pyrroloquinoline quinone biosynthesis protein PqqE	NA	NA	NA	NA	NA
WP_013817432.1|770431_770704_-	pyrroloquinoline quinone biosynthesis peptide chaperone PqqD	NA	NA	NA	NA	NA
WP_013817433.1|770733_771297_-	Uma2 family endonuclease	NA	NA	NA	NA	NA
WP_013817434.1|771299_772028_-	pyrroloquinoline-quinone synthase PqqC	NA	NA	NA	NA	NA
WP_013817435.1|772038_772950_-	pyrroloquinoline quinone biosynthesis protein PqqB	NA	NA	NA	NA	NA
WP_054760176.1|773052_773127_-	pyrroloquinoline quinone precursor peptide PqqA	NA	NA	NA	NA	NA
WP_013817437.1|773278_774067_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_013817438.1|774158_775397_+	multifunctional CCA addition/repair protein	NA	A0A0F6YPT7	Sinorhizobium_phage	50.0	8.8e-89
WP_013817439.1|775404_775755_+	DMT family protein	NA	NA	NA	NA	NA
WP_013817440.1|775783_776629_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_013817441.1|776652_777078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817442.1|777111_778551_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_013817443.1|778572_779904_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
>prophage 3
NC_015572	Methylomonas methanica MC09, complete sequence	5051681	802674	810750	5051681	tRNA	Moraxella_phage(16.67%)	7	NA	NA
WP_013817465.1|802674_803685_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	53.6	4.6e-96
WP_013817466.1|803791_804025_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_013817467.1|804036_804486_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	49.6	2.2e-26
WP_013817468.1|804508_806239_+	DNA primase	NA	A0A1S5RH32	Helicobacter_phage	32.8	3.5e-43
WP_013817469.1|806314_808129_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	31.1	2.3e-37
WP_013817470.1|808278_809439_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	59.9	5.3e-128
WP_013817471.1|809457_810750_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	32.6	1.6e-48
>prophage 4
NC_015572	Methylomonas methanica MC09, complete sequence	5051681	896345	949181	5051681	plate,transposase	Agrobacterium_phage(25.0%)	47	NA	NA
WP_013817538.1|896345_897710_-|transposase	IS1380 family transposase	transposase	NA	NA	NA	NA
WP_013817539.1|897853_898453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817540.1|898690_899257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013817541.1|899318_899654_-	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
WP_148261938.1|900146_902960_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_041363742.1|904192_904513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817542.1|904505_905360_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_013817543.1|905346_906726_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_013817544.1|906722_907127_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_013817545.1|907129_907402_+	AtpZ/AtpI family protein	NA	NA	NA	NA	NA
WP_013817546.1|907408_908101_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_013817547.1|908097_908364_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_013817548.1|908492_908810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148261939.1|909411_910386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817550.1|910497_911250_+	ATP synthase subunit B	NA	NA	NA	NA	NA
WP_013817551.1|911242_912682_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_013817552.1|912678_913491_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_049794737.1|913545_914016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013817555.1|914911_915655_+	response regulator	NA	NA	NA	NA	NA
WP_013817556.1|915764_916805_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_013817557.1|916831_917368_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_013817558.1|917371_918862_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_013817559.1|918982_919465_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_013817560.1|919534_920344_+	virulence protein SciE type	NA	NA	NA	NA	NA
WP_013817561.1|920346_920850_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_013817562.1|920852_922736_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_013817563.1|922699_923764_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_013817564.1|923803_926524_+	type VI secretion system ATPase TssH	NA	A0A223W0B1	Agrobacterium_phage	30.7	1.1e-83
WP_013817565.1|926789_927809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041363745.1|927879_928224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817567.1|928490_929525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817568.1|929575_929917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041365014.1|930045_930384_+	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA	NA
WP_013817570.1|930457_931807_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_158307407.1|932208_932835_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA	NA
WP_013817572.1|932867_933563_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA	NA
WP_013817573.1|933697_934741_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	48.5	2.3e-74
WP_013817574.1|934828_935641_+	DUF2066 domain-containing protein	NA	NA	NA	NA	NA
WP_013817575.1|935731_936838_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_041365016.1|937087_938611_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_013817577.1|938607_939054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041363750.1|939172_940252_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_013817579.1|940348_942577_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_013817580.1|942789_945117_-	PKD domain-containing protein	NA	F5B3R2	Synechococcus_phage	39.3	4.9e-56
WP_013817582.1|945551_946052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013817583.1|946072_947431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013816810.1|947669_949181_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	23.4	1.2e-23
>prophage 5
NC_015572	Methylomonas methanica MC09, complete sequence	5051681	1363303	1394663	5051681	transposase	uncultured_Caudovirales_phage(33.33%)	27	NA	NA
WP_013817952.1|1363303_1364386_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_013817232.1|1364382_1364883_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_049794604.1|1364952_1365369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817953.1|1365635_1370036_+	ParB N-terminal domain-containing protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	42.7	9.0e-19
WP_013817954.1|1370040_1370364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817231.1|1371404_1372703_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_013817955.1|1373156_1374008_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_148261951.1|1374237_1374633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013817956.1|1374809_1375817_-	NAD-dependent epimerase	NA	M1NML0	Moumouvirus	27.8	9.8e-30
WP_013817957.1|1375820_1377092_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	A7IWZ0	Paramecium_bursaria_Chlorella_virus	26.6	2.3e-23
WP_013817958.1|1377135_1377753_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013817959.1|1377820_1378381_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_013817960.1|1378370_1380212_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_013817961.1|1380217_1380856_-	uracil-DNA glycosylase	NA	NA	NA	NA	NA
WP_013817963.1|1381484_1382804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013817964.1|1382815_1383472_-	PspA/IM30 family protein	NA	NA	NA	NA	NA
WP_013817965.1|1383674_1385132_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_148262077.1|1385433_1386261_+	ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_013817967.1|1386272_1388288_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_173363139.1|1388256_1388883_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_013817969.1|1388883_1389258_+	cytochrome C oxidase subunit IV family protein	NA	NA	NA	NA	NA
WP_013817970.1|1389267_1389726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085983711.1|1390456_1392036_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_148261952.1|1392195_1392468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041363835.1|1392629_1392914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013817232.1|1393083_1393584_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013817952.1|1393580_1394663_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NC_015572	Methylomonas methanica MC09, complete sequence	5051681	2116271	2181536	5051681	integrase,transposase	Leptospira_phage(16.67%)	48	2106251:2106267	2185666:2185682
2106251:2106267	attL	TCGTTTCCGGGTTGATT	NA	NA	NA	NA
WP_013818591.1|2116271_2117303_-|integrase	site-specific integrase	integrase	K4PAZ9	Burkholderia_phage	47.0	1.0e-82
WP_081470802.1|2117191_2117506_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_158307422.1|2117718_2117862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148262098.1|2118359_2120318_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_013818593.1|2120305_2121655_+	cytochrome P450	NA	V5UQK0	Mycobacterium_phage	24.1	1.8e-18
WP_013818594.1|2121756_2122701_+	response regulator	NA	NA	NA	NA	NA
WP_013818595.1|2122681_2124145_-	HAMP domain-containing histidine kinase	NA	Q6XLV6	Feldmannia_irregularis_virus	25.6	6.0e-12
WP_013818596.1|2124141_2125020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041363993.1|2125000_2125912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013818598.1|2126168_2127002_+	ParA family protein	NA	Q7M293	Enterobacteria_phage	31.6	6.3e-06
WP_013818599.1|2126998_2128510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013818600.1|2128523_2129081_+	DUF2857 domain-containing protein	NA	NA	NA	NA	NA
WP_148261969.1|2129117_2130467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013818602.1|2130729_2131617_+	TIGR03761 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_013818603.1|2131707_2132142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013818604.1|2132482_2136529_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013818606.1|2137720_2139265_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	49.5	1.7e-134
WP_013818607.1|2139375_2140131_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	48.8	4.3e-54
WP_013818608.1|2140261_2141146_+	WD40 repeat domain-containing protein	NA	NA	NA	NA	NA
WP_013818609.1|2142661_2143519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041365327.1|2144429_2144903_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_013818612.1|2144948_2145608_+	SOS response-associated peptidase	NA	A0A1P8CX02	Bacillus_phage	43.2	3.4e-23
WP_013818613.1|2145798_2146419_+	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	37.6	8.5e-24
WP_013818614.1|2146422_2146665_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_013816810.1|2146970_2148482_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	23.4	1.2e-23
WP_013818617.1|2148786_2149062_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_013818618.1|2149377_2150748_+	radical SAM protein	NA	NA	NA	NA	NA
WP_085983717.1|2151215_2152446_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	69.9	9.3e-107
WP_013818619.1|2153176_2153542_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_041364003.1|2153538_2154078_+	RES domain-containing protein	NA	NA	NA	NA	NA
WP_081470803.1|2154010_2154388_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_013818622.1|2154368_2154533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013818623.1|2154566_2156120_+	SAM-dependent DNA methyltransferase	NA	A0A220A2U5	Liberibacter_phage	31.4	2.3e-46
WP_041365333.1|2156130_2157174_+	DUF1016 domain-containing protein	NA	Q9JMP5	Wolbachia_phage	36.1	1.2e-65
WP_013818625.1|2157170_2158571_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_013818626.1|2158672_2159821_+	Fic family protein	NA	D7RWK9	Brochothrix_phage	29.5	4.1e-32
WP_013818627.1|2159864_2162999_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	26.9	7.0e-66
WP_013818628.1|2163456_2165016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013818629.1|2165456_2166068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013818630.1|2166054_2166660_-	exosortase family protein XrtM	NA	NA	NA	NA	NA
WP_013818632.1|2167704_2168478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041364011.1|2168616_2168892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013818633.1|2168903_2176184_-	DUF4225 domain-containing protein	NA	S5W9C6	Leptospira_phage	42.6	1.0e-06
WP_013818634.1|2176180_2176915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013818635.1|2176925_2178158_-	terpene cyclase/mutase family protein	NA	NA	NA	NA	NA
WP_013818636.1|2179208_2179616_+|transposase	transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	46.9	1.8e-06
WP_013818637.1|2179591_2179942_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	41.3	1.1e-17
WP_013818638.1|2179973_2181536_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	35.9	2.0e-74
2185666:2185682	attR	AATCAACCCGGAAACGA	NA	NA	NA	NA
>prophage 7
NC_015572	Methylomonas methanica MC09, complete sequence	5051681	2184755	2190366	5051681		Yersinia_phage(16.67%)	7	NA	NA
WP_013818642.1|2184755_2185574_+	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	38.3	3.9e-45
WP_013818643.1|2185657_2186080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013818644.1|2186104_2186293_+	hypothetical protein	NA	E5FFJ6	Burkholderia_phage	50.0	9.7e-08
WP_041365346.1|2186393_2187686_-	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	47.8	1.9e-102
WP_013818646.1|2187691_2188171_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A2H4J538	uncultured_Caudovirales_phage	52.0	1.5e-28
WP_148262099.1|2188327_2189722_+	3'-5' exoribonuclease	NA	A0A1X9I5C8	Streptococcus_phage	32.7	1.2e-14
WP_013818648.1|2189700_2190366_+	SOS response-associated peptidase	NA	A0A1P8CX02	Bacillus_phage	44.6	1.3e-22
>prophage 8
NC_015572	Methylomonas methanica MC09, complete sequence	5051681	2670824	2787059	5051681	plate,transposase,integrase,tail,tRNA	Bacillus_phage(28.57%)	90	2709312:2709329	2789465:2789482
WP_013819068.1|2670824_2672999_-|plate	putative baseplate assembly protein	plate	NA	NA	NA	NA
WP_041364200.1|2673037_2673433_-	GPW/gp25 family protein	NA	A0A1D7SP91	Cyanophage	36.8	2.6e-10
WP_013819070.1|2673429_2675289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819071.1|2675282_2675930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819072.1|2675931_2676975_-	phage late control D family protein	NA	NA	NA	NA	NA
WP_013819073.1|2676976_2677138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819075.1|2677939_2678425_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_013819076.1|2678417_2679971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819077.1|2679974_2680430_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_013819078.1|2680442_2682620_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A219VHA7	Ochrobactrum_phage	24.7	1.9e-14
WP_013819079.1|2682660_2683482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819080.1|2683478_2684072_-	DUF4255 domain-containing protein	NA	NA	NA	NA	NA
WP_013819081.1|2684479_2684929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819082.1|2685090_2685339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819083.1|2685925_2687281_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_013819084.1|2687277_2688141_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_013819085.1|2688140_2689937_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	1.7e-32
WP_013819086.1|2690028_2691945_+	transglycosylase SLT domain-containing protein	NA	A0A1P8CWQ1	Bacillus_phage	35.5	2.5e-13
WP_013819087.1|2692021_2692537_+	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA	NA	NA	NA	NA	NA
WP_013819088.1|2692546_2693767_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA	NA
WP_013819089.1|2693815_2694673_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	71.5	2.1e-105
WP_013819090.1|2694689_2695736_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	47.0	1.0e-85
WP_013819091.1|2695818_2696178_-	TfoX/Sxy family protein	NA	NA	NA	NA	NA
WP_013819092.1|2696200_2696674_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_013819093.1|2696720_2700311_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_013819094.1|2700526_2700880_-	DUF167 domain-containing protein	NA	NA	NA	NA	NA
WP_013819095.1|2700969_2701653_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013819096.1|2701820_2702036_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA	NA
WP_013819097.1|2702195_2708603_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
2709312:2709329	attL	CAACCTTATGTGCGATAC	NA	NA	NA	NA
WP_049794649.1|2709554_2711540_+	squalene--hopene cyclase	NA	NA	NA	NA	NA
WP_013819100.1|2711614_2713321_-	type II secretion system ATPase GspE	NA	NA	NA	NA	NA
WP_013819101.1|2713598_2714480_+	DUF2167 domain-containing protein	NA	NA	NA	NA	NA
WP_085983716.1|2714607_2716187_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_013819102.1|2716465_2716828_+	STAS/SEC14 domain-containing protein	NA	NA	NA	NA	NA
WP_013819103.1|2717211_2717922_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_013819104.1|2718093_2718246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013819105.1|2718572_2718875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041364210.1|2719789_2720017_+|integrase	tyrosine-type recombinase/integrase	integrase	S6C485	Thermus_phage	46.9	1.2e-07
WP_013819106.1|2720013_2721126_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_013819108.1|2721734_2721917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819109.1|2721996_2722419_-	DUF3806 domain-containing protein	NA	NA	NA	NA	NA
WP_013819110.1|2722515_2723889_-	Fic family protein	NA	A0A249Y6T0	Cherax_quadricarinatus_iridovirus	29.1	2.3e-05
WP_013819111.1|2724028_2724535_-	HEPN domain-containing protein	NA	NA	NA	NA	NA
WP_013819112.1|2726631_2726808_+	CsbD family protein	NA	NA	NA	NA	NA
WP_013819113.1|2727003_2727153_+	lmo0937 family membrane protein	NA	NA	NA	NA	NA
WP_049794653.1|2728894_2729857_+	OmpA family protein	NA	NA	NA	NA	NA
WP_013819114.1|2730242_2730581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013819115.1|2730669_2732007_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_013819116.1|2732003_2733179_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_013819117.1|2733175_2736304_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.7	2.3e-45
WP_013819118.1|2736377_2736662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013819119.1|2737566_2737854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013819120.1|2738385_2738886_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_158307430.1|2738882_2739209_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_158307431.1|2739154_2739964_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_081470816.1|2739969_2740959_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.0	5.7e-38
WP_148261990.1|2741572_2742625_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_013819122.1|2743148_2743775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013819123.1|2743900_2744425_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013817231.1|2744503_2745802_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_013819124.1|2746565_2747180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013819125.1|2747643_2748804_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_148262113.1|2748811_2751157_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_013819127.1|2751435_2752296_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013819128.1|2752437_2753304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013819129.1|2753344_2754925_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_013819130.1|2754924_2756400_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_013819131.1|2756389_2757547_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_013819132.1|2757553_2758009_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_013819133.1|2758202_2758577_+	group 1 truncated hemoglobin	NA	NA	NA	NA	NA
WP_013819134.1|2758741_2759464_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013819135.1|2759578_2759749_+	rubredoxin	NA	NA	NA	NA	NA
WP_013819136.1|2759918_2760236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013819137.1|2760232_2760829_+	cytochrome c	NA	NA	NA	NA	NA
WP_173363142.1|2760825_2762319_+	cbb3-type cytochrome c oxidase subunit I	NA	NA	NA	NA	NA
WP_013819139.1|2762374_2762599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819141.1|2762989_2763433_-	SMI1/KNR4 family protein	NA	NA	NA	NA	NA
WP_013819142.1|2763454_2770768_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_013819143.1|2770847_2772551_-	prenyltransferase	NA	NA	NA	NA	NA
WP_013819144.1|2772658_2773078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819145.1|2773757_2774420_-	class I SAM-dependent methyltransferase	NA	W8CYT3	Bacillus_phage	33.9	1.8e-11
WP_013819146.1|2774775_2775354_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_013819147.1|2775601_2776630_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_173363153.1|2776623_2778411_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	31.9	3.7e-19
WP_013819149.1|2778407_2779529_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_013819150.1|2779532_2780645_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_013819151.1|2780741_2781602_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_013819152.1|2781746_2782682_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	38.1	2.2e-15
WP_013819153.1|2782678_2786056_-	response regulator	NA	A0A2K9L0Z8	Tupanvirus	30.5	1.2e-23
WP_013819154.1|2786513_2787059_-|transposase	transposase	transposase	NA	NA	NA	NA
2789465:2789482	attR	CAACCTTATGTGCGATAC	NA	NA	NA	NA
>prophage 9
NC_015572	Methylomonas methanica MC09, complete sequence	5051681	3078591	3122634	5051681	integrase,transposase,protease	uncultured_Mediterranean_phage(50.0%)	32	3111999:3112013	3126720:3126734
WP_013819406.1|3078591_3079989_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	29.5	1.2e-20
WP_013819407.1|3080033_3080978_-	MucB/RseB C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_013819408.1|3080986_3081490_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_013819409.1|3081500_3082091_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	24.4	8.4e-05
WP_013819410.1|3082228_3083863_+	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_013819411.1|3084119_3086405_-	type II secretion system secretin GspD	NA	R9TEZ5	Vibrio_phage	30.3	2.2e-21
WP_013819412.1|3086394_3086997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819413.1|3086989_3087571_-	type II secretion system protein M	NA	NA	NA	NA	NA
WP_013819414.1|3087563_3088772_-	PilN domain-containing protein	NA	NA	NA	NA	NA
WP_148262123.1|3088749_3089733_-	general secretion pathway protein GspK	NA	NA	NA	NA	NA
WP_013819416.1|3089713_3090391_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_148262124.1|3090387_3090813_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_013819418.1|3090799_3091261_-	type II transport protein	NA	NA	NA	NA	NA
WP_013819419.1|3091267_3091693_-	type II secretion system major pseudopilin GspG	NA	NA	NA	NA	NA
WP_013819420.1|3091706_3092924_-	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_013819421.1|3093016_3093979_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_013819422.1|3093975_3094953_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_013819423.1|3095115_3095592_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_013817538.1|3096782_3098147_+|transposase	IS1380 family transposase	transposase	NA	NA	NA	NA
WP_013819425.1|3098387_3099449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819426.1|3099882_3100662_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_013819427.1|3100715_3101201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819428.1|3101200_3101680_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_013819429.1|3101676_3101973_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_013819430.1|3102242_3104243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819431.1|3104252_3108695_-	N-6 DNA methylase	NA	A0A1B1IUC6	uncultured_Mediterranean_phage	23.2	1.1e-45
WP_013819432.1|3108716_3111491_-	DEAD/DEAH box helicase	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	26.2	2.6e-40
3111999:3112013	attL	TCGGCATTGTCGAAG	NA	NA	NA	NA
WP_013816810.1|3116764_3118276_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	23.4	1.2e-23
WP_041364361.1|3118378_3118612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819433.1|3118800_3119283_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_013819434.1|3119287_3119896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013819435.1|3119892_3122634_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
3126720:3126734	attR	CTTCGACAATGCCGA	NA	NA	NA	NA
>prophage 10
NC_015572	Methylomonas methanica MC09, complete sequence	5051681	4694666	4707895	5051681	protease	Bacillus_virus(25.0%)	11	NA	NA
WP_013820824.1|4694666_4694939_-	HU family DNA-binding protein	NA	A4JWM7	Burkholderia_virus	59.6	5.0e-21
WP_013820825.1|4695143_4697558_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	50.1	4.1e-207
WP_013820826.1|4697709_4698984_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.3	1.6e-133
WP_173363160.1|4699081_4699687_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	54.9	4.1e-55
WP_013820828.1|4699722_4701024_-	trigger factor	NA	NA	NA	NA	NA
WP_013820829.1|4701287_4701749_+	DUF192 domain-containing protein	NA	E3SJ03	Synechococcus_phage	33.0	1.4e-07
WP_013820830.1|4701764_4704083_-	type I DNA topoisomerase	NA	A0A0G2Y787	Acanthamoeba_polyphaga_mimivirus	37.1	1.2e-99
WP_013820831.1|4704099_4704567_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_148262035.1|4704575_4705673_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_013820833.1|4705729_4706773_-	LysM peptidoglycan-binding domain-containing protein	NA	G3MBQ1	Bacillus_virus	54.5	1.2e-06
WP_013820834.1|4706926_4707895_-	GDP-L-fucose synthase	NA	M4R1H4	Synechococcus_phage	52.6	1.9e-91
