assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000218265.1_ASM21826v1	NC_017325	Sinorhizobium meliloti SM11, complete sequence	1	734795-734908	1	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh	Orphan	CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAA	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh	NA|52aa|up_4|NC_017325.1_730124_730280_-,NA|59aa|up_3|NC_017325.1_730317_730494_-,NA|58aa|down_9|NC_017325.1_745701_745875_-	NA|987aa|up_9|NC_017325.1_718890_721851_+	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA|776aa|up_8|NC_017325.1_721861_724189_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|885aa|up_7|NC_017325.1_724542_727197_-	PRK14015, pepN, aminopeptidase N; Provisional	NA|313aa|up_6|NC_017325.1_727622_728561_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|430aa|up_5|NC_017325.1_728570_729860_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|52aa|up_4|NC_017325.1_730124_730280_-	NA	NA|59aa|up_3|NC_017325.1_730317_730494_-	NA	NA|287aa|up_2|NC_017325.1_730632_731493_-	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|430aa|up_1|NC_017325.1_731565_732855_-	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins	NA|555aa|up_0|NC_017325.1_733124_734789_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|333aa|down_0|NC_017325.1_735353_736352_+	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold	NA|296aa|down_1|NC_017325.1_736572_737460_+	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|134aa|down_2|NC_017325.1_738662_739064_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|309aa|down_3|NC_017325.1_739202_740129_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|496aa|down_4|NC_017325.1_740144_741632_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|340aa|down_5|NC_017325.1_741624_742644_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|319aa|down_6|NC_017325.1_742739_743696_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|501aa|down_7|NC_017325.1_743724_745227_-	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|107aa|down_8|NC_017325.1_745306_745627_-	COG1742, COG1742, Uncharacterized conserved protein [Function unknown]	NA|58aa|down_9|NC_017325.1_745701_745875_-	NA
GCF_000218265.1_ASM21826v1	NC_017325	Sinorhizobium meliloti SM11, complete sequence	2	1555925-1556037	2	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh	Orphan	ATTCCTGTGACGAGCACAGGAATGAGGG	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh	NA|313aa|up_2|NC_017325.1_1552334_1553273_-,NA	NA|632aa|up_9|NC_017325.1_1544399_1546295_+	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]	NA|228aa|up_8|NC_017325.1_1546327_1547011_-	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|232aa|up_7|NC_017325.1_1547230_1547926_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|181aa|up_6|NC_017325.1_1548037_1548580_+	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|464aa|up_5|NC_017325.1_1548784_1550176_+	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant	NA|458aa|up_4|NC_017325.1_1550408_1551782_+	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|132aa|up_3|NC_017325.1_1551917_1552313_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|313aa|up_2|NC_017325.1_1552334_1553273_-	NA	NA|578aa|up_1|NC_017325.1_1553378_1555112_-	COG4655, COG4655, Predicted membrane protein [Function unknown]	NA|141aa|up_0|NC_017325.1_1555113_1555536_-	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|640aa|down_0|NC_017325.1_1556162_1558082_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|561aa|down_1|NC_017325.1_1558350_1560033_+	PRK13981, PRK13981, NAD synthetase; Provisional	NA|276aa|down_2|NC_017325.1_1560035_1560863_+	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|341aa|down_3|NC_017325.1_1560873_1561896_-	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems	NA|398aa|down_4|NC_017325.1_1561993_1563187_+	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]	NA|274aa|down_5|NC_017325.1_1563558_1564380_+	PRK06198, PRK06198, short chain dehydrogenase; Provisional	NA|228aa|down_6|NC_017325.1_1564677_1565361_+	cd02145, BluB, 5,6-dimethylbenzimidazole synthase	NA|376aa|down_7|NC_017325.1_1565384_1566512_-	pfam11064, DUF2865, Protein of unknown function (DUF2865)	NA|215aa|down_8|NC_017325.1_1566679_1567324_-	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|246aa|down_9|NC_017325.1_1567480_1568218_-	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins
GCF_000218265.1_ASM21826v1	NC_017325	Sinorhizobium meliloti SM11, complete sequence	3	2845539-2845623	3	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh	Orphan	CCGCTGCGCACTTTTCCTGGAATTGCTC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh	NA|85aa|up_4|NC_017325.1_2843940_2844195_-,NA|63aa|up_3|NC_017325.1_2844248_2844437_-,NA|67aa|up_2|NC_017325.1_2844581_2844782_+,NA|67aa|up_1|NC_017325.1_2844875_2845076_-,NA|110aa|up_0|NC_017325.1_2845057_2845387_-,NA|112aa|down_0|NC_017325.1_2845886_2846222_-,NA|87aa|down_1|NC_017325.1_2846436_2846697_-,NA|117aa|down_6|NC_017325.1_2850946_2851297_-	NA|286aa|up_9|NC_017325.1_2838778_2839636_+	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|276aa|up_8|NC_017325.1_2839628_2840456_+	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	NA|500aa|up_7|NC_017325.1_2840448_2841948_+	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism]	NA|442aa|up_6|NC_017325.1_2841979_2843305_+	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown]	NA|198aa|up_5|NC_017325.1_2843292_2843886_+	COG3758, COG3758, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_4|NC_017325.1_2843940_2844195_-	NA	NA|63aa|up_3|NC_017325.1_2844248_2844437_-	NA	NA|67aa|up_2|NC_017325.1_2844581_2844782_+	NA	NA|67aa|up_1|NC_017325.1_2844875_2845076_-	NA	NA|110aa|up_0|NC_017325.1_2845057_2845387_-	NA	NA|112aa|down_0|NC_017325.1_2845886_2846222_-	NA	NA|87aa|down_1|NC_017325.1_2846436_2846697_-	NA	NA|399aa|down_2|NC_017325.1_2847454_2848651_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|322aa|down_3|NC_017325.1_2848914_2849880_-	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins	NA|92aa|down_4|NC_017325.1_2850066_2850342_+	pfam06627, DUF1153, Protein of unknown function (DUF1153)	NA|94aa|down_5|NC_017325.1_2850492_2850774_+	COG2388, COG2388, Predicted acetyltransferase [General function prediction only]	NA|117aa|down_6|NC_017325.1_2850946_2851297_-	NA	NA|234aa|down_7|NC_017325.1_2851847_2852549_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|123aa|down_8|NC_017325.1_2852923_2853292_-	pfam00072, Response_reg, Response regulator receiver domain	NA|221aa|down_9|NC_017325.1_2853534_2854197_-	COG5385, COG5385, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000218265.1_ASM21826v1	NC_017325	Sinorhizobium meliloti SM11, complete sequence	4	3684183-3684329	4	CRISPRCasFinder	no	RT	cas3,csa3,WYL,RT,DEDDh	Unclear	TCTCCCCGCATGCGGGGAGAAGGG	24	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,RT,DEDDh	NA,NA	NA|429aa|up_9|NC_017325.1_3671031_3672318_+	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]	NA|490aa|up_8|NC_017325.1_3672379_3673849_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|337aa|up_7|NC_017325.1_3673907_3674918_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|328aa|up_6|NC_017325.1_3674925_3675909_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|388aa|up_5|NC_017325.1_3676137_3677301_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	RT|420aa|up_4|NC_017325.1_3678469_3679729_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|270aa|up_3|NC_017325.1_3680496_3681306_-	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	NA|464aa|up_2|NC_017325.1_3681436_3682828_+	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism]	NA|115aa|up_1|NC_017325.1_3682915_3683260_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|285aa|up_0|NC_017325.1_3683268_3684123_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|320aa|down_0|NC_017325.1_3684359_3685319_-	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family	NA|543aa|down_1|NC_017325.1_3685329_3686958_-	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	NA|378aa|down_2|NC_017325.1_3686966_3688100_-	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|361aa|down_3|NC_017325.1_3688099_3689182_-	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|620aa|down_4|NC_017325.1_3689362_3691222_-	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|356aa|down_5|NC_017325.1_3691513_3692581_+	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane]	NA|127aa|down_6|NC_017325.1_3692701_3693082_+	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism]	NA|340aa|down_7|NC_017325.1_3693143_3694163_+	PRK00292, glk, glucokinase; Provisional	NA|602aa|down_8|NC_017325.1_3694271_3696077_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|273aa|down_9|NC_017325.1_3696094_3696913_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
