assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	1	98193-98285	1	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Orphan	CTGATTTCTTTCGGGTTTGAGAA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA|385aa|up_8|NC_015703.1_82415_83570_+,NA	NA|305aa|up_9|NC_015703.1_81449_82364_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|385aa|up_8|NC_015703.1_82415_83570_+	NA	NA|397aa|up_7|NC_015703.1_83684_84875_-	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	NA|607aa|up_6|NC_015703.1_85294_87115_-	cd11349, AmyAc_3, Alpha amylase catalytic domain found in an uncharacterized protein family	NA|375aa|up_5|NC_015703.1_87180_88305_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|184aa|up_4|NC_015703.1_88314_88866_-	COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]	NA|270aa|up_3|NC_015703.1_88953_89763_-	PRK14609, PRK14609, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|635aa|up_2|NC_015703.1_89852_91757_-	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|606aa|up_1|NC_015703.1_91936_93754_+	pfam00759, Glyco_hydro_9, Glycosyl hydrolase family 9	NA|416aa|up_0|NC_015703.1_93853_95101_+	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD	NA|255aa|down_0|NC_015703.1_98299_99064_-	cd06259, YdcF-like, YdcF-like	NA|477aa|down_1|NC_015703.1_99165_100596_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|476aa|down_2|NC_015703.1_100615_102043_+	pfam13905, Thioredoxin_8, Thioredoxin-like	NA|96aa|down_3|NC_015703.1_102157_102445_-	pfam02617, ClpS, ATP-dependent Clp protease adaptor protein ClpS	NA|494aa|down_4|NC_015703.1_102544_104026_+	cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain	NA|372aa|down_5|NC_015703.1_104231_105347_+	pfam14054, DUF4249, Domain of unknown function (DUF4249)	NA|807aa|down_6|NC_015703.1_105384_107805_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|215aa|down_7|NC_015703.1_107922_108567_+	cd06259, YdcF-like, YdcF-like	NA|95aa|down_8|NC_015703.1_108700_108985_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|299aa|down_9|NC_015703.1_109000_109897_+	COG1741, COG1741, Pirin-related protein [General function prediction only]
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	2	861649-861746	2	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Orphan	GTAGGGGCAGGCCTTGCGTCTGCC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA|244aa|up_4|NC_015703.1_853807_854539_-,NA|449aa|up_0|NC_015703.1_858462_859809_-,NA|154aa|down_1|NC_015703.1_862805_863267_-,NA|169aa|down_8|NC_015703.1_868803_869310_+,NA|120aa|down_9|NC_015703.1_869432_869792_+	NA|639aa|up_9|NC_015703.1_842821_844738_+	cd06905, M14-like, Peptidase M14-like domain; uncharacterized subfamily	NA|239aa|up_8|NC_015703.1_844865_845582_-	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|229aa|up_7|NC_015703.1_845811_846498_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|781aa|up_6|NC_015703.1_846571_848914_-	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	NA|1592aa|up_5|NC_015703.1_848910_853686_-	pfam04357, TamB, TamB, inner membrane protein subunit of TAM complex	NA|244aa|up_4|NC_015703.1_853807_854539_-	NA	NA|328aa|up_3|NC_015703.1_854767_855751_-	PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional	NA|464aa|up_2|NC_015703.1_855917_857309_-	pfam00067, p450, Cytochrome P450	NA|298aa|up_1|NC_015703.1_857536_858430_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|449aa|up_0|NC_015703.1_858462_859809_-	NA	NA|258aa|down_0|NC_015703.1_861860_862634_-	PRK06057, PRK06057, short chain dehydrogenase; Provisional	NA|154aa|down_1|NC_015703.1_862805_863267_-	NA	NA|396aa|down_2|NC_015703.1_863315_864503_-	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|191aa|down_3|NC_015703.1_864626_865199_+	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|79aa|down_4|NC_015703.1_865256_865493_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|416aa|down_5|NC_015703.1_865523_866771_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|233aa|down_6|NC_015703.1_866834_867533_+	TIGR02191, Ribonuclease_3, ribonuclease III, bacterial	NA|339aa|down_7|NC_015703.1_867750_868767_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|169aa|down_8|NC_015703.1_868803_869310_+	NA	NA|120aa|down_9|NC_015703.1_869432_869792_+	NA
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	3	2261839-2261924	3	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Orphan	ATATTTCGCGGTTATCGGGCGGA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA|129aa|up_6|NC_015703.1_2254103_2254490_-,NA|415aa|up_5|NC_015703.1_2254882_2256127_+,NA|139aa|up_4|NC_015703.1_2256354_2256771_+,NA|62aa|down_0|NC_015703.1_2261975_2262161_-,NA|236aa|down_1|NC_015703.1_2262192_2262900_-	NA|706aa|up_9|NC_015703.1_2248075_2250193_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|856aa|up_8|NC_015703.1_2250477_2253045_+	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family	NA|238aa|up_7|NC_015703.1_2253240_2253954_+	cd16329, LolA_like, proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB	NA|129aa|up_6|NC_015703.1_2254103_2254490_-	NA	NA|415aa|up_5|NC_015703.1_2254882_2256127_+	NA	NA|139aa|up_4|NC_015703.1_2256354_2256771_+	NA	NA|199aa|up_3|NC_015703.1_2256942_2257539_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|795aa|up_2|NC_015703.1_2257668_2260053_-	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|111aa|up_1|NC_015703.1_2260343_2260676_-	TIGR03433, padR_acidobact, transcriptional regulator, Acidobacterial, PadR-family	NA|283aa|up_0|NC_015703.1_2260944_2261793_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|62aa|down_0|NC_015703.1_2261975_2262161_-	NA	NA|236aa|down_1|NC_015703.1_2262192_2262900_-	NA	NA|802aa|down_2|NC_015703.1_2263117_2265523_-	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|795aa|down_3|NC_015703.1_2265655_2268040_-	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|801aa|down_4|NC_015703.1_2268138_2270541_-	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|145aa|down_5|NC_015703.1_2270957_2271392_+	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]	NA|786aa|down_6|NC_015703.1_2271406_2273764_-	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|226aa|down_7|NC_015703.1_2273851_2274529_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|121aa|down_8|NC_015703.1_2274616_2274979_+	PRK12275, PRK12275, hypothetical protein; Reviewed	NA|417aa|down_9|NC_015703.1_2275041_2276292_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	4	2377100-2377190	4	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Orphan	TTTCTGTTTATAACCGGTGGAGAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA|133aa|up_2|NC_015703.1_2374664_2375063_+,NA|141aa|down_3|NC_015703.1_2382743_2383166_-,NA|123aa|down_4|NC_015703.1_2383531_2383900_+	NA|300aa|up_9|NC_015703.1_2365010_2365910_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|578aa|up_8|NC_015703.1_2366009_2367743_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|395aa|up_7|NC_015703.1_2367806_2368991_-	TIGR03991, alt_bact_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	NA|497aa|up_6|NC_015703.1_2369182_2370673_+	PRK03643, PRK03643, tagaturonate reductase	NA|216aa|up_5|NC_015703.1_2370760_2371408_+	pfam07920, DUF1684, Protein of unknown function (DUF1684)	NA|150aa|up_4|NC_015703.1_2371571_2372021_+	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase	NA|807aa|up_3|NC_015703.1_2372161_2374582_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|133aa|up_2|NC_015703.1_2374664_2375063_+	NA	NA|100aa|up_1|NC_015703.1_2375073_2375373_+	pfam05164, ZapA, Cell division protein ZapA	NA|522aa|up_0|NC_015703.1_2375472_2377038_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|187aa|down_0|NC_015703.1_2377275_2377836_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|560aa|down_1|NC_015703.1_2377913_2379593_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|952aa|down_2|NC_015703.1_2379740_2382596_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|141aa|down_3|NC_015703.1_2382743_2383166_-	NA	NA|123aa|down_4|NC_015703.1_2383531_2383900_+	NA	NA|1030aa|down_5|NC_015703.1_2384061_2387151_+	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed	NA|496aa|down_6|NC_015703.1_2387354_2388842_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|233aa|down_7|NC_015703.1_2388899_2389598_-	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain	NA|653aa|down_8|NC_015703.1_2389736_2391695_-	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain	NA|351aa|down_9|NC_015703.1_2391708_2392761_-	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	5	2755362-2755461	5	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Orphan	TTAGCGTGAAGTAAAGAATAAAAAGCAGAGTGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA|200aa|up_2|NC_015703.1_2751562_2752162_+,NA|399aa|down_1|NC_015703.1_2757158_2758355_-,NA|284aa|down_5|NC_015703.1_2761620_2762472_-,NA|355aa|down_7|NC_015703.1_2763129_2764194_-	NA|193aa|up_9|NC_015703.1_2743503_2744082_+	PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase; Provisional	NA|489aa|up_8|NC_015703.1_2744520_2745987_+	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]	NA|281aa|up_7|NC_015703.1_2746061_2746904_+	pfam05103, DivIVA, DivIVA protein	NA|117aa|up_6|NC_015703.1_2746928_2747279_+	pfam02152, FolB, Dihydroneopterin aldolase	NA|489aa|up_5|NC_015703.1_2747437_2748904_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|223aa|up_4|NC_015703.1_2749143_2749812_+	cd14840, D-Ala-D-Ala_dipeptidase_Aad, D-Ala-D-Ala dipeptidase (includes Lactobacillus plantarum Aad peptidase)	NA|481aa|up_3|NC_015703.1_2749815_2751258_+	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	NA|200aa|up_2|NC_015703.1_2751562_2752162_+	NA	NA|453aa|up_1|NC_015703.1_2752213_2753572_+	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|378aa|up_0|NC_015703.1_2753729_2754863_-	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional	NA|461aa|down_0|NC_015703.1_2755534_2756917_-	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase	NA|399aa|down_1|NC_015703.1_2757158_2758355_-	NA	NA|389aa|down_2|NC_015703.1_2758530_2759697_-	PRK06203, aroB, 3-dehydroquinate synthase; Reviewed	NA|293aa|down_3|NC_015703.1_2759710_2760589_-	cd13964, PT_UbiA_1, UbiA family of prenyltransferases (PTases), Unknown subgroup	NA|340aa|down_4|NC_015703.1_2760590_2761610_-	COG1099, COG1099, Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]	NA|284aa|down_5|NC_015703.1_2761620_2762472_-	NA	NA|159aa|down_6|NC_015703.1_2762645_2763122_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|355aa|down_7|NC_015703.1_2763129_2764194_-	NA	NA|303aa|down_8|NC_015703.1_2764337_2765246_-	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]	NA|181aa|down_9|NC_015703.1_2765292_2765835_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	6	3071325-3071427	6	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Orphan	CCCATCGCTTTAGCGTGGGGAGAATG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA|387aa|up_4|NC_015703.1_3059470_3060631_+,NA|112aa|down_8|NC_015703.1_3080364_3080700_-	NA|340aa|up_9|NC_015703.1_3049541_3050561_+	cd08994, GH43_62_32_68_117_130-like, Glycosyl hydrolase families: GH43, GH62, GH32, GH68, GH117, CH130	NA|982aa|up_8|NC_015703.1_3050570_3053516_+	pfam17132, Glyco_hydro_106, alpha-L-rhamnosidase	NA|338aa|up_7|NC_015703.1_3053528_3054542_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|1022aa|up_6|NC_015703.1_3054879_3057945_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|477aa|up_5|NC_015703.1_3057975_3059406_+	cd08977, SusD, starch binding outer membrane protein SusD	NA|387aa|up_4|NC_015703.1_3059470_3060631_+	NA	NA|601aa|up_3|NC_015703.1_3060637_3062440_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|330aa|up_2|NC_015703.1_3062487_3063477_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|358aa|up_1|NC_015703.1_3065483_3066557_+	cd08994, GH43_62_32_68_117_130-like, Glycosyl hydrolase families: GH43, GH62, GH32, GH68, GH117, CH130	NA|570aa|up_0|NC_015703.1_3069468_3071178_+	cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|670aa|down_0|NC_015703.1_3071481_3073491_+	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|784aa|down_1|NC_015703.1_3073620_3075972_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|192aa|down_2|NC_015703.1_3076112_3076688_+	pfam13628, DUF4142, Domain of unknown function (DUF4142)	NA|68aa|down_3|NC_015703.1_3076728_3076932_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|179aa|down_4|NC_015703.1_3077229_3077766_-	pfam16940, Tic110, Chloroplast envelope transporter	NA|141aa|down_5|NC_015703.1_3078118_3078541_+	pfam02514, CobN-Mg_chel, CobN/Magnesium Chelatase	NA|344aa|down_6|NC_015703.1_3078707_3079739_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|144aa|down_7|NC_015703.1_3079877_3080309_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|112aa|down_8|NC_015703.1_3080364_3080700_-	NA	NA|115aa|down_9|NC_015703.1_3080775_3081120_+	pfam06271, RDD, RDD family
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	7	3252734-3252840	7	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Orphan	ACCGTAGGGGCAGGCTTTACGTCTGCCCGGT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA|52aa|up_7|NC_015703.1_3242977_3243133_+,NA|138aa|up_6|NC_015703.1_3243286_3243700_+,NA|78aa|up_5|NC_015703.1_3243925_3244159_-,NA|804aa|down_0|NC_015703.1_3253055_3255467_+,NA|96aa|down_3|NC_015703.1_3258063_3258351_-	NA|427aa|up_9|NC_015703.1_3239106_3240387_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|721aa|up_8|NC_015703.1_3240480_3242643_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|52aa|up_7|NC_015703.1_3242977_3243133_+	NA	NA|138aa|up_6|NC_015703.1_3243286_3243700_+	NA	NA|78aa|up_5|NC_015703.1_3243925_3244159_-	NA	NA|388aa|up_4|NC_015703.1_3244249_3245413_-	cd01543, PBP1_XylR, ligand-binding domain of DNA transcription repressor specific for xylose (XylR)	NA|418aa|up_3|NC_015703.1_3245472_3246726_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|283aa|up_2|NC_015703.1_3246911_3247760_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|860aa|up_1|NC_015703.1_3247901_3250481_-	cd06569, GH20_Sm-chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|366aa|up_0|NC_015703.1_3250581_3251679_+	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	NA|804aa|down_0|NC_015703.1_3253055_3255467_+	NA	NA|518aa|down_1|NC_015703.1_3255711_3257265_+	pfam16370, MetallophosC, C terminal of Calcineurin-like phosphoesterase	NA|93aa|down_2|NC_015703.1_3257462_3257741_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|96aa|down_3|NC_015703.1_3258063_3258351_-	NA	NA|84aa|down_4|NC_015703.1_3258430_3258682_-	pfam11190, DUF2976, Protein of unknown function (DUF2976)	NA|151aa|down_5|NC_015703.1_3260530_3260983_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|258aa|down_6|NC_015703.1_3261103_3261877_+	pfam07978, NIPSNAP, NIPSNAP	NA|700aa|down_7|NC_015703.1_3261970_3264070_-	cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent glucose dehydrogenase	NA|736aa|down_8|NC_015703.1_3264425_3266633_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|472aa|down_9|NC_015703.1_3266707_3268123_-	cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase AlkH-like
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	8	3659810-3659922	8	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Orphan	AAAACGGGCCGACGCAAGGCCTGCCCCTACGTTTACATTTT	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA|118aa|up_9|NC_015703.1_3644438_3644792_+,NA|262aa|up_4|NC_015703.1_3649570_3650356_+,NA|423aa|down_5|NC_015703.1_3668634_3669903_-	NA|118aa|up_9|NC_015703.1_3644438_3644792_+	NA	NA|167aa|up_8|NC_015703.1_3644770_3645271_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|286aa|up_7|NC_015703.1_3645925_3646783_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|375aa|up_6|NC_015703.1_3647112_3648237_+	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators	NA|260aa|up_5|NC_015703.1_3648353_3649133_+	pfam00072, Response_reg, Response regulator receiver domain	NA|262aa|up_4|NC_015703.1_3649570_3650356_+	NA	NA|1008aa|up_3|NC_015703.1_3650927_3653951_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|1106aa|up_2|NC_015703.1_3654248_3657566_-	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41	NA|369aa|up_1|NC_015703.1_3657652_3658759_-	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair]	NA|288aa|up_0|NC_015703.1_3658775_3659639_-	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|325aa|down_0|NC_015703.1_3659981_3660956_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|585aa|down_1|NC_015703.1_3661157_3662912_+	cd06905, M14-like, Peptidase M14-like domain; uncharacterized subfamily	NA|603aa|down_2|NC_015703.1_3662957_3664766_+	cd06905, M14-like, Peptidase M14-like domain; uncharacterized subfamily	NA|524aa|down_3|NC_015703.1_3664981_3666553_+	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|618aa|down_4|NC_015703.1_3666791_3668645_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|423aa|down_5|NC_015703.1_3668634_3669903_-	NA	NA|247aa|down_6|NC_015703.1_3669954_3670695_+	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|356aa|down_7|NC_015703.1_3670908_3671976_-	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|185aa|down_8|NC_015703.1_3672324_3672879_-	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|141aa|down_9|NC_015703.1_3673120_3673543_+	pfam14108, DUF4281, Domain of unknown function (DUF4281)
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	9	4509667-4510731	1,9,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Orphan	GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG,GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG,GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	37,37,37	0	0	NA	NA	NA:NA:NA	14,14,14	14	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA|87aa|up_8|NC_015703.1_4506259_4506520_+,NA|79aa|up_7|NC_015703.1_4506516_4506753_+,NA|205aa|up_5|NC_015703.1_4506979_4507594_+,NA|56aa|up_4|NC_015703.1_4507598_4507766_+,NA|85aa|up_3|NC_015703.1_4507821_4508076_+,NA|131aa|up_1|NC_015703.1_4508920_4509313_+,NA|90aa|up_0|NC_015703.1_4509309_4509579_+,NA|56aa|down_0|NC_015703.1_4511024_4511192_-,NA|245aa|down_1|NC_015703.1_4511612_4512347_-,NA|279aa|down_5|NC_015703.1_4515273_4516110_-,NA|237aa|down_8|NC_015703.1_4518338_4519049_-	NA|131aa|up_9|NC_015703.1_4505677_4506070_-	pfam10686, DUF2493, Protein of unknown function (DUF2493)	NA|87aa|up_8|NC_015703.1_4506259_4506520_+	NA	NA|79aa|up_7|NC_015703.1_4506516_4506753_+	NA	NA|59aa|up_6|NC_015703.1_4506736_4506913_+	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system	NA|205aa|up_5|NC_015703.1_4506979_4507594_+	NA	NA|56aa|up_4|NC_015703.1_4507598_4507766_+	NA	NA|85aa|up_3|NC_015703.1_4507821_4508076_+	NA	NA|217aa|up_2|NC_015703.1_4508100_4508751_+	pfam12684, DUF3799, PDDEXK-like domain of unknown function (DUF3799)	NA|131aa|up_1|NC_015703.1_4508920_4509313_+	NA	NA|90aa|up_0|NC_015703.1_4509309_4509579_+	NA	NA|56aa|down_0|NC_015703.1_4511024_4511192_-	NA	NA|245aa|down_1|NC_015703.1_4511612_4512347_-	NA	NA|306aa|down_2|NC_015703.1_4512599_4513517_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|123aa|down_3|NC_015703.1_4513594_4513963_-	COG4270, COG4270, Predicted membrane protein [Function unknown]	NA|308aa|down_4|NC_015703.1_4513964_4514888_-	PRK06197, PRK06197, short chain dehydrogenase; Provisional	NA|279aa|down_5|NC_015703.1_4515273_4516110_-	NA	NA|150aa|down_6|NC_015703.1_4516529_4516979_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|423aa|down_7|NC_015703.1_4516980_4518249_+	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|237aa|down_8|NC_015703.1_4518338_4519049_-	NA	NA|739aa|down_9|NC_015703.1_4519242_4521459_-	pfam09972, DUF2207, Predicted membrane protein (DUF2207)
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	10	5456408-5456515	10	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Orphan	CTTCGGTTGTGAGCAACCGATGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA|421aa|up_9|NC_015703.1_5436932_5438195_-,NA|102aa|down_4|NC_015703.1_5464554_5464860_+,NA|115aa|down_5|NC_015703.1_5465165_5465510_+,NA|212aa|down_9|NC_015703.1_5468750_5469386_+	NA|421aa|up_9|NC_015703.1_5436932_5438195_-	NA	NA|201aa|up_8|NC_015703.1_5439054_5439657_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|461aa|up_7|NC_015703.1_5440218_5441601_+	cd15482, Sialidase_non-viral, Non-viral sialidases	NA|731aa|up_6|NC_015703.1_5442261_5444454_-	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region	NA|262aa|up_5|NC_015703.1_5444480_5445266_-	cd07333, M48C_bepA_like, Peptidase M48C Ste24p bepA-like, integral membrane protein	NA|821aa|up_4|NC_015703.1_5446847_5449310_+	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|287aa|up_3|NC_015703.1_5449555_5450416_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|893aa|up_2|NC_015703.1_5450577_5453256_-	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family	NA|645aa|up_1|NC_015703.1_5453400_5455335_-	pfam14121, Porin_10, Putative porin	NA|215aa|up_0|NC_015703.1_5455636_5456281_-	pfam06439, DUF1080, Domain of Unknown Function (DUF1080)	NA|956aa|down_0|NC_015703.1_5456610_5459478_-	pfam13585, CHU_C, C-terminal domain of CHU protein family	NA|262aa|down_1|NC_015703.1_5459791_5460577_+	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum	NA|663aa|down_2|NC_015703.1_5460655_5462644_+	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA|255aa|down_3|NC_015703.1_5462723_5463488_+	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated	NA|102aa|down_4|NC_015703.1_5464554_5464860_+	NA	NA|115aa|down_5|NC_015703.1_5465165_5465510_+	NA	NA|316aa|down_6|NC_015703.1_5465766_5466714_+	pfam02469, Fasciclin, Fasciclin domain	NA|360aa|down_7|NC_015703.1_5466792_5467872_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|255aa|down_8|NC_015703.1_5467880_5468645_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|212aa|down_9|NC_015703.1_5468750_5469386_+	NA
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	11	5772288-5784494	2,11,2	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas6,cas5,cas3,cas8b6,cas7,cas4,cas1,cas2	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Unclear	GCTTTAATCGTACCTTTTTGGAATTGAAA,GCTTTAATCGTACCTTTTTGGAATTGAAAC,GCTTTAATCGTACCTTTTTGGAATTGAAAC	29,30,30	0	0	NA	NA	I-A,II-B,III-A:I-A,II-B,III-A:I-A,II-B,III-A	184,184,184	184	Unclear	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	cas5|194aa|up_8|NC_015703.1_5762100_5762682_+,cas8b6|467aa|up_6|NC_015703.1_5764828_5766229_+,NA	cas6|221aa|up_9|NC_015703.1_5761429_5762092_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas5|194aa|up_8|NC_015703.1_5762100_5762682_+	NA	cas3|717aa|up_7|NC_015703.1_5762681_5764832_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8b6|467aa|up_6|NC_015703.1_5764828_5766229_+	NA	cas7|352aa|up_5|NC_015703.1_5767375_5768431_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	NA|164aa|up_4|NC_015703.1_5768487_5768979_+	COG0337, AroB, 3-dehydroquinate synthetase [Amino acid transport and metabolism]	NA|387aa|up_3|NC_015703.1_5769049_5770210_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	cas4|181aa|up_2|NC_015703.1_5770206_5770749_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|335aa|up_1|NC_015703.1_5770745_5771750_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|88aa|up_0|NC_015703.1_5771789_5772053_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|274aa|down_0|NC_015703.1_5784567_5785389_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|160aa|down_1|NC_015703.1_5785677_5786157_+	pfam09643, YopX, YopX protein	NA|419aa|down_2|NC_015703.1_5786171_5787428_-	cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain	NA|155aa|down_3|NC_015703.1_5787523_5787988_-	COG4539, COG4539, Predicted membrane protein [Function unknown]	NA|367aa|down_4|NC_015703.1_5788117_5789218_-	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)	NA|262aa|down_5|NC_015703.1_5789472_5790258_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|353aa|down_6|NC_015703.1_5790288_5791347_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|841aa|down_7|NC_015703.1_5791483_5794006_-	TIGR02604, Piru_Ver_Nterm, putative membrane-bound dehydrogenase domain	NA|128aa|down_8|NC_015703.1_5794365_5794749_-	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins	NA|980aa|down_9|NC_015703.1_5795151_5798091_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	12	5968496-5968584	12	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Orphan	CCTTTGAAAGACGGGATGACCGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA|246aa|up_6|NC_015703.1_5956056_5956794_-,NA|47aa|down_3|NC_015703.1_5974778_5974919_-	NA|416aa|up_9|NC_015703.1_5938387_5939635_-	pfam01345, DUF11, Domain of unknown function DUF11	NA|3145aa|up_8|NC_015703.1_5939711_5949146_-	pfam17963, Big_9, Bacterial Ig domain	NA|2179aa|up_7|NC_015703.1_5949350_5955887_-	sd00002, TSP3, Calcium-binding Thrombospondin type 3 (TSP3) repeat	NA|246aa|up_6|NC_015703.1_5956056_5956794_-	NA	NA|271aa|up_5|NC_015703.1_5958317_5959130_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|658aa|up_4|NC_015703.1_5959132_5961106_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|646aa|up_3|NC_015703.1_5961205_5963143_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|243aa|up_2|NC_015703.1_5963515_5964244_-	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed	NA|378aa|up_1|NC_015703.1_5964334_5965468_-	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase	NA|657aa|up_0|NC_015703.1_5965779_5967750_-	PRK03584, PRK03584, acetoacetate--CoA ligase	NA|388aa|down_0|NC_015703.1_5969684_5970848_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|458aa|down_1|NC_015703.1_5970892_5972266_-	cd12105, HmuY, Bacterial proteins similar to Porphyromonas gingivalis HmuY	NA|758aa|down_2|NC_015703.1_5972300_5974574_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|47aa|down_3|NC_015703.1_5974778_5974919_-	NA	NA|288aa|down_4|NC_015703.1_5975102_5975966_+	cd11301, Fut1_Fut2_like, Alpha-1,2-fucosyltransferase	NA|286aa|down_5|NC_015703.1_5975970_5976828_-	pfam00034, Cytochrom_C, Cytochrome c	NA|244aa|down_6|NC_015703.1_5976967_5977699_-	pfam07978, NIPSNAP, NIPSNAP	NA|285aa|down_7|NC_015703.1_5977750_5978605_+	cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins	NA|135aa|down_8|NC_015703.1_5978623_5979028_+	pfam13778, DUF4174, Domain of unknown function (DUF4174)	NA|289aa|down_9|NC_015703.1_5979076_5979943_-	pfam02517, Abi, CAAX protease self-immunity
GCF_000218895.1_ASM21889v1	NC_015703	Runella slithyformis DSM 19594, complete sequence	13	6532320-6532435	13	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	Orphan	CAGTATACCTTTTGCAGTTTAAAATTTT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA,NA	NA|747aa|up_9|NC_015703.1_6519999_6522240_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|429aa|up_8|NC_015703.1_6522574_6523861_+	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion]	NA|264aa|up_7|NC_015703.1_6523927_6524719_-	pfam07978, NIPSNAP, NIPSNAP	NA|119aa|up_6|NC_015703.1_6524866_6525223_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|338aa|up_5|NC_015703.1_6525380_6526394_+	cd19149, AKR_AKR11B2, Escherichia coli NADH-specific methylglyoxal reductase (YdjG) and similar proteins	NA|394aa|up_4|NC_015703.1_6526461_6527643_+	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|137aa|up_3|NC_015703.1_6527740_6528151_+	pfam00034, Cytochrom_C, Cytochrome c	NA|522aa|up_2|NC_015703.1_6528259_6529825_+	pfam18105, PGM1_C, PGM1 C-terminal domain	NA|363aa|up_1|NC_015703.1_6529874_6530963_-	PRK03080, PRK03080, phosphoserine transaminase	NA|118aa|up_0|NC_015703.1_6531906_6532260_-	TIGR02436, S23_ribosomal_protein, four helix bundle protein	NA|140aa|down_0|NC_015703.1_6532468_6532888_-	pfam01220, DHquinase_II, Dehydroquinase class II	NA|1036aa|down_1|NC_015703.1_6533023_6536131_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|376aa|down_2|NC_015703.1_6536164_6537292_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|159aa|down_3|NC_015703.1_6538562_6539039_-	pfam16132, DUF4843, Domain of unknown function (DUF4843)	NA|488aa|down_4|NC_015703.1_6539089_6540553_-	cd08977, SusD, starch binding outer membrane protein SusD	NA|1041aa|down_5|NC_015703.1_6540604_6543727_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|1018aa|down_6|NC_015703.1_6543943_6546997_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|245aa|down_7|NC_015703.1_6547056_6547791_-	PRK11697, PRK11697, two-component system response regulator BtsR	NA|365aa|down_8|NC_015703.1_6547814_6548909_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|810aa|down_9|NC_015703.1_6549113_6551543_+	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family
GCF_000218895.1_ASM21889v1	NC_015693	Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequence	1	64159-64257	1	CRISPRCasFinder	no			Orphan	CGACAGAATCCTCGTGAACTGCGACAGAATCCTCG	35	1	1	64194-64222	NC_015693.1_64237-64265	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA|56aa|up_4|NC_015693.1_58757_58925_+,NA|212aa|up_3|NC_015693.1_59747_60383_+,NA|80aa|down_1|NC_015693.1_66550_66790_-,NA|107aa|down_3|NC_015693.1_68428_68749_+,NA|99aa|down_4|NC_015693.1_68740_69037_-	NA|443aa|up_9|NC_015693.1_50966_52295_-	smart00633, Glyco_10, Glycosyl hydrolase family 10	NA|297aa|up_8|NC_015693.1_52299_53190_-	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily	NA|487aa|up_7|NC_015693.1_53195_54656_-	cd08977, SusD, starch binding outer membrane protein SusD	NA|996aa|up_6|NC_015693.1_54720_57708_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|246aa|up_5|NC_015693.1_57899_58637_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|56aa|up_4|NC_015693.1_58757_58925_+	NA	NA|212aa|up_3|NC_015693.1_59747_60383_+	NA	NA|271aa|up_2|NC_015693.1_60387_61200_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|280aa|up_1|NC_015693.1_61917_62757_-	cd16404, pNOB8_ParB_N_like, pNOB8 ParB-like N-terminal domain, plasmid partitioning system protein domain	NA|315aa|up_0|NC_015693.1_62770_63715_-	pfam13614, AAA_31, AAA domain	NA|301aa|down_0|NC_015693.1_64364_65267_+	pfam01051, Rep_3, Initiator Replication protein	NA|80aa|down_1|NC_015693.1_66550_66790_-	NA	NA|391aa|down_2|NC_015693.1_67008_68181_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|107aa|down_3|NC_015693.1_68428_68749_+	NA	NA|99aa|down_4|NC_015693.1_68740_69037_-	NA	NA|343aa|down_5|NC_015693.1_69500_70529_-	TIGR03858, LLM_2I7G, probable oxidoreductase, LLM family	NA|348aa|down_6|NC_015693.1_71198_72242_+	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional	NA|347aa|down_7|NC_015693.1_72251_73292_+	PRK00943, PRK00943, selenide, water dikinase SelD	NA|326aa|down_8|NC_015693.1_73495_74473_+	pfam06283, ThuA, Trehalose utilisation	NA|417aa|down_9|NC_015693.1_74535_75786_+	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases
GCF_000218895.1_ASM21889v1	NC_015694	Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequence	1	52-149	1	CRISPRCasFinder	no			Orphan	AAAGTTATTTTAGACTGATAAAAAGTTATTTTTA	34	1	1	86-115	NC_015694.1_128-157	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	NA,NA|90aa|down_1|NC_015694.1_1735_2005_+,NA|134aa|down_2|NC_015694.1_2111_2513_-,NA|256aa|down_3|NC_015694.1_2514_3282_-,NA|115aa|down_5|NC_015694.1_4047_4392_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|210aa|down_0|NC_015694.1_1029_1659_+	cd02042, ParAB_family, partition proteins ParAB family	NA|90aa|down_1|NC_015694.1_1735_2005_+	NA	NA|134aa|down_2|NC_015694.1_2111_2513_-	NA	NA|256aa|down_3|NC_015694.1_2514_3282_-	NA	NA|121aa|down_4|NC_015694.1_3352_3715_-	cd15389, 7tmA_GPR83, G protein-coupled receptor 83, member of the class A family of seven-transmembrane G protein-coupled receptors	NA|115aa|down_5|NC_015694.1_4047_4392_+	NA	NA|340aa|down_6|NC_015694.1_4388_5408_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|93aa|down_7|NC_015694.1_5854_6133_+	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only]	NA|105aa|down_8|NC_015694.1_6148_6463_+	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	NA|185aa|down_9|NC_015694.1_6660_7215_+	sd00006, TPR, Tetratricopeptide repeat
