assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000223215.1_ASM22321v1	NC_017243	Brachyspira intermedia PWS/A, complete sequence	1	199015-199123	1	CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	CTGATAGAGTTTTTAAAGCGAGATTTTTTATATATAA	37	0	0	NA	NA	NA	1	1	Orphan	cas4,DinG,csa3	NA|391aa|up_7|NC_017243.1_189085_190258_-,NA|348aa|up_4|NC_017243.1_193960_195004_+,NA|424aa|down_0|NC_017243.1_199357_200629_-,NA|176aa|down_1|NC_017243.1_200754_201282_+,NA|433aa|down_2|NC_017243.1_201382_202681_-,NA|160aa|down_3|NC_017243.1_202902_203382_+,NA|447aa|down_4|NC_017243.1_203460_204801_-,NA|437aa|down_5|NC_017243.1_205836_207147_-,NA|154aa|down_6|NC_017243.1_207320_207782_+,NA|175aa|down_7|NC_017243.1_208161_208686_+,NA|445aa|down_8|NC_017243.1_208778_210113_-	NA|258aa|up_9|NC_017243.1_187057_187831_+	sd00006, TPR, Tetratricopeptide repeat	NA|102aa|up_8|NC_017243.1_188632_188938_+	pfam15428, Imm26, Immunity protein 26	NA|391aa|up_7|NC_017243.1_189085_190258_-	NA	NA|601aa|up_6|NC_017243.1_191050_192853_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|299aa|up_5|NC_017243.1_192900_193797_-	pfam07728, AAA_5, AAA domain (dynein-related subfamily)	NA|348aa|up_4|NC_017243.1_193960_195004_+	NA	NA|139aa|up_3|NC_017243.1_195088_195505_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|204aa|up_2|NC_017243.1_195473_196085_-	PRK00698, tmk, thymidylate kinase; Validated	NA|384aa|up_1|NC_017243.1_196445_197597_-	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|266aa|up_0|NC_017243.1_197815_198613_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|424aa|down_0|NC_017243.1_199357_200629_-	NA	NA|176aa|down_1|NC_017243.1_200754_201282_+	NA	NA|433aa|down_2|NC_017243.1_201382_202681_-	NA	NA|160aa|down_3|NC_017243.1_202902_203382_+	NA	NA|447aa|down_4|NC_017243.1_203460_204801_-	NA	NA|437aa|down_5|NC_017243.1_205836_207147_-	NA	NA|154aa|down_6|NC_017243.1_207320_207782_+	NA	NA|175aa|down_7|NC_017243.1_208161_208686_+	NA	NA|445aa|down_8|NC_017243.1_208778_210113_-	NA	NA|618aa|down_9|NC_017243.1_210211_212065_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
GCF_000223215.1_ASM22321v1	NC_017243	Brachyspira intermedia PWS/A, complete sequence	2	260121-260327	1,2	PILER-CR,CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	TGGGAATAATAAAGATTTAGAGGATCTTTATTGTT,GAATAATAAGATTTAGAGGATCTTTAT	35,27	0	0	NA	NA	NA:NA	2,2	2	Orphan	cas4,DinG,csa3	NA|187aa|up_9|NC_017243.1_245290_245851_+,NA|142aa|up_8|NC_017243.1_245961_246387_-,NA|241aa|up_7|NC_017243.1_246601_247324_+,NA|107aa|down_8|NC_017243.1_271507_271828_-	NA|187aa|up_9|NC_017243.1_245290_245851_+	NA	NA|142aa|up_8|NC_017243.1_245961_246387_-	NA	NA|241aa|up_7|NC_017243.1_246601_247324_+	NA	NA|269aa|up_6|NC_017243.1_249132_249939_+	cd08770, DAP_dppA_3, Peptidase M55, D-aminopeptidase dipeptide-binding protein family	NA|169aa|up_5|NC_017243.1_250048_250555_+	cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|768aa|up_4|NC_017243.1_250581_252885_+	pfam09511, RNA_lig_T4_1, RNA ligase	NA|393aa|up_3|NC_017243.1_253217_254396_-	TIGR00990, Mitochondrial_import_receptor_subunit_TOM70, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	NA|720aa|up_2|NC_017243.1_254569_256729_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|381aa|up_1|NC_017243.1_257350_258493_-	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|375aa|up_0|NC_017243.1_258927_260052_-	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|360aa|down_0|NC_017243.1_260675_261755_-	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|378aa|down_1|NC_017243.1_262688_263822_-	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|392aa|down_2|NC_017243.1_264221_265397_-	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|372aa|down_3|NC_017243.1_265716_266832_-	pfam07728, AAA_5, AAA domain (dynein-related subfamily)	NA|290aa|down_4|NC_017243.1_266873_267743_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|249aa|down_5|NC_017243.1_268281_269028_+	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|70aa|down_6|NC_017243.1_269092_269302_-	TIGR03980, conserved_hypothetical_protein, hybrid cluster protein-associated redox disulfide domain	NA|713aa|down_7|NC_017243.1_269359_271498_-	sd00006, TPR, Tetratricopeptide repeat	NA|107aa|down_8|NC_017243.1_271507_271828_-	NA	NA|111aa|down_9|NC_017243.1_271842_272175_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation
GCF_000223215.1_ASM22321v1	NC_017243	Brachyspira intermedia PWS/A, complete sequence	3	316960-317186	2,3	PILER-CR,CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	AATAGGCTCATAATTTTTTCTTATATCCTTTATAAAAAATTTGTTCGTTAATAAGCCC,TTTCTTATATCCTTTATAAAAAATT	58,25	2	2	317130-317161|317097-317144	NC_017243.1_316928-316959|NC_017243.1_316928-316975	NA:NA	2,1	2	Orphan	cas4,DinG,csa3	NA|298aa|up_8|NC_017243.1_307976_308870_-,NA|136aa|up_6|NC_017243.1_309983_310391_-,NA|91aa|up_2|NC_017243.1_314032_314305_-,NA	NA|246aa|up_9|NC_017243.1_307229_307967_+	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|298aa|up_8|NC_017243.1_307976_308870_-	NA	NA|355aa|up_7|NC_017243.1_308893_309958_-	TIGR02925, hypothetical_protein_Nmul_A0241, peptidyl-prolyl cis-trans isomerase, EpsD family	NA|136aa|up_6|NC_017243.1_309983_310391_-	NA	NA|89aa|up_5|NC_017243.1_310399_310666_-	pfam12732, YtxH, YtxH-like protein	NA|171aa|up_4|NC_017243.1_310883_311396_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|220aa|up_3|NC_017243.1_311462_312122_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|91aa|up_2|NC_017243.1_314032_314305_-	NA	NA|318aa|up_1|NC_017243.1_314705_315659_-	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|372aa|up_0|NC_017243.1_315690_316806_-	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|510aa|down_0|NC_017243.1_318110_319640_-	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|360aa|down_1|NC_017243.1_319795_320875_-	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|359aa|down_2|NC_017243.1_320942_322019_-	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|358aa|down_3|NC_017243.1_322032_323106_-	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|361aa|down_4|NC_017243.1_323149_324232_-	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|262aa|down_5|NC_017243.1_324278_325064_-	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases	NA|273aa|down_6|NC_017243.1_325082_325901_-	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases	NA|217aa|down_7|NC_017243.1_325955_326606_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|373aa|down_8|NC_017243.1_326798_327917_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|144aa|down_9|NC_017243.1_328078_328510_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain
GCF_000223215.1_ASM22321v1	NC_017243	Brachyspira intermedia PWS/A, complete sequence	4	415512-415614	4	CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	AGCGAGTTTATTTATAAGCAATAAA	25	0	0	NA	NA	NA	1	1	Orphan	cas4,DinG,csa3	NA|668aa|up_7|NC_017243.1_406036_408040_-,NA|167aa|up_5|NC_017243.1_409335_409836_-,NA|166aa|up_4|NC_017243.1_410049_410547_-,NA|150aa|down_3|NC_017243.1_418686_419136_+,NA|32aa|down_7|NC_017243.1_423836_423932_+	NA|868aa|up_9|NC_017243.1_400493_403097_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|504aa|up_8|NC_017243.1_403313_404825_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|668aa|up_7|NC_017243.1_406036_408040_-	NA	NA|260aa|up_6|NC_017243.1_408061_408841_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|167aa|up_5|NC_017243.1_409335_409836_-	NA	NA|166aa|up_4|NC_017243.1_410049_410547_-	NA	NA|492aa|up_3|NC_017243.1_410715_412191_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|90aa|up_2|NC_017243.1_412589_412859_+	pfam01257, 2Fe-2S_thioredx, Thioredoxin-like [2Fe-2S] ferredoxin	NA|388aa|up_1|NC_017243.1_412855_414019_+	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|466aa|up_0|NC_017243.1_414049_415447_+	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]	NA|518aa|down_0|NC_017243.1_415626_417180_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|211aa|down_1|NC_017243.1_417181_417814_-	PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|201aa|down_2|NC_017243.1_417954_418557_-	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|150aa|down_3|NC_017243.1_418686_419136_+	NA	NA|377aa|down_4|NC_017243.1_419441_420572_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|376aa|down_5|NC_017243.1_420951_422079_+	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]	NA|500aa|down_6|NC_017243.1_422311_423811_+	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain	NA|32aa|down_7|NC_017243.1_423836_423932_+	NA	NA|375aa|down_8|NC_017243.1_424092_425217_+	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|236aa|down_9|NC_017243.1_425310_426018_-	pfam04298, Zn_peptidase_2, Putative neutral zinc metallopeptidase
GCF_000223215.1_ASM22321v1	NC_017243	Brachyspira intermedia PWS/A, complete sequence	5	610938-611043	5	CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	GAGTAATGTTGGAGGCGATCAAATTG	26	0	0	NA	NA	NA	1	1	Orphan	cas4,DinG,csa3	NA|155aa|up_9|NC_017243.1_594242_594707_+,NA|85aa|up_7|NC_017243.1_595892_596147_+,NA|143aa|up_4|NC_017243.1_599813_600242_-,NA|92aa|up_0|NC_017243.1_610372_610648_+,NA|269aa|down_1|NC_017243.1_612237_613044_+,NA|84aa|down_5|NC_017243.1_615164_615416_+	NA|155aa|up_9|NC_017243.1_594242_594707_+	NA	NA|334aa|up_8|NC_017243.1_594858_595860_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|85aa|up_7|NC_017243.1_595892_596147_+	NA	NA|454aa|up_6|NC_017243.1_596689_598051_+	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|477aa|up_5|NC_017243.1_598232_599663_+	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	NA|143aa|up_4|NC_017243.1_599813_600242_-	NA	NA|779aa|up_3|NC_017243.1_601327_603664_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|924aa|up_2|NC_017243.1_604460_607232_+	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|939aa|up_1|NC_017243.1_607485_610302_+	pfam12950, TaqI_C, TaqI-like C-terminal specificity domain	NA|92aa|up_0|NC_017243.1_610372_610648_+	NA	NA|327aa|down_0|NC_017243.1_611260_612241_+	pfam12775, AAA_7, P-loop containing dynein motor region D3	NA|269aa|down_1|NC_017243.1_612237_613044_+	NA	NA|81aa|down_2|NC_017243.1_613637_613880_-	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|85aa|down_3|NC_017243.1_613882_614137_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|206aa|down_4|NC_017243.1_614414_615032_-	pfam08668, HDOD, HDOD domain	NA|84aa|down_5|NC_017243.1_615164_615416_+	NA	NA|1042aa|down_6|NC_017243.1_615893_619019_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|235aa|down_7|NC_017243.1_619960_620665_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|68aa|down_8|NC_017243.1_620813_621017_-	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|598aa|down_9|NC_017243.1_621245_623039_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)
GCF_000223215.1_ASM22321v1	NC_017243	Brachyspira intermedia PWS/A, complete sequence	6	1251935-1252090	6	CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	TAATCCCGCTTTCCTGTATATCCAGAAACAGTTTATTAAAACTGCTCTTTAA	52	0	0	NA	NA	NA	1	1	Orphan	cas4,DinG,csa3	NA,NA|919aa|down_1|NC_017243.1_1253596_1256353_+,NA|89aa|down_2|NC_017243.1_1256570_1256837_-,NA|123aa|down_3|NC_017243.1_1256860_1257229_-,NA|324aa|down_4|NC_017243.1_1257289_1258261_-,NA|118aa|down_5|NC_017243.1_1258284_1258638_-,NA|308aa|down_6|NC_017243.1_1258781_1259705_-,NA|136aa|down_7|NC_017243.1_1259887_1260295_-,NA|151aa|down_8|NC_017243.1_1260320_1260773_-,NA|170aa|down_9|NC_017243.1_1260853_1261363_-	NA|160aa|up_9|NC_017243.1_1235718_1236198_+	pfam02464, CinA, Competence-damaged protein	NA|568aa|up_8|NC_017243.1_1236426_1238130_+	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|344aa|up_7|NC_017243.1_1238186_1239218_+	PRK05686, fliG, flagellar motor switch protein G; Validated	NA|301aa|up_6|NC_017243.1_1239259_1240162_+	PRK06669, fliH, flagellar assembly protein H; Validated	NA|485aa|up_5|NC_017243.1_1240197_1241652_+	COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]	NA|151aa|up_4|NC_017243.1_1241683_1242136_+	TIGR02473, conserved_hypothetical_protein, flagellar export protein FliJ	NA|242aa|up_3|NC_017243.1_1242156_1242882_+	cd16896, LT_Slt70-like, uncharacterized lytic transglycosylase subfamily with similarity to Slt70	NA|701aa|up_2|NC_017243.1_1243059_1245162_+	cd05819, NHL, NHL repeat unit of beta-propeller proteins	NA|664aa|up_1|NC_017243.1_1245308_1247300_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|1038aa|up_0|NC_017243.1_1248228_1251342_+	pfam13945, NST1, Salt tolerance down-regulator	NA|294aa|down_0|NC_017243.1_1252180_1253062_-	TIGR02909, conserved_hypothetical_protein, uncharacterized protein, YkwD family	NA|919aa|down_1|NC_017243.1_1253596_1256353_+	NA	NA|89aa|down_2|NC_017243.1_1256570_1256837_-	NA	NA|123aa|down_3|NC_017243.1_1256860_1257229_-	NA	NA|324aa|down_4|NC_017243.1_1257289_1258261_-	NA	NA|118aa|down_5|NC_017243.1_1258284_1258638_-	NA	NA|308aa|down_6|NC_017243.1_1258781_1259705_-	NA	NA|136aa|down_7|NC_017243.1_1259887_1260295_-	NA	NA|151aa|down_8|NC_017243.1_1260320_1260773_-	NA	NA|170aa|down_9|NC_017243.1_1260853_1261363_-	NA
GCF_000223215.1_ASM22321v1	NC_017243	Brachyspira intermedia PWS/A, complete sequence	7	1633280-1633376	7	CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	TATCAAATAAAGACTCAGAGCTTTTGAATGA	31	0	0	NA	NA	NA	1	1	Orphan	cas4,DinG,csa3	NA|203aa|up_5|NC_017243.1_1606157_1606766_-,NA|692aa|up_0|NC_017243.1_1611529_1613605_-,NA|248aa|down_0|NC_017243.1_1638068_1638812_-,NA|274aa|down_1|NC_017243.1_1638814_1639636_-,NA|177aa|down_6|NC_017243.1_1648331_1648862_-,NA|113aa|down_7|NC_017243.1_1649147_1649486_+	NA|234aa|up_9|NC_017243.1_1601213_1601915_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|709aa|up_8|NC_017243.1_1602059_1604186_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|343aa|up_7|NC_017243.1_1604255_1605284_-	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional	NA|225aa|up_6|NC_017243.1_1605343_1606018_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|203aa|up_5|NC_017243.1_1606157_1606766_-	NA	NA|328aa|up_4|NC_017243.1_1606960_1607944_+	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|338aa|up_3|NC_017243.1_1608067_1609081_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|336aa|up_2|NC_017243.1_1609160_1610168_-	pfam02618, YceG, YceG-like family	NA|417aa|up_1|NC_017243.1_1610252_1611503_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|692aa|up_0|NC_017243.1_1611529_1613605_-	NA	NA|248aa|down_0|NC_017243.1_1638068_1638812_-	NA	NA|274aa|down_1|NC_017243.1_1638814_1639636_-	NA	NA|145aa|down_2|NC_017243.1_1639673_1640108_-	PRK00601, dut, dUTP diphosphatase	NA|461aa|down_3|NC_017243.1_1640133_1641516_-	pfam02447, GntP_permease, GntP family permease	NA|104aa|down_4|NC_017243.1_1641569_1641881_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|1939aa|down_5|NC_017243.1_1642435_1648252_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|177aa|down_6|NC_017243.1_1648331_1648862_-	NA	NA|113aa|down_7|NC_017243.1_1649147_1649486_+	NA	NA|380aa|down_8|NC_017243.1_1649625_1650765_-	pfam11738, DUF3298, Protein of unknown function (DUF3298)	NA|355aa|down_9|NC_017243.1_1652912_1653977_+	TIGR02622, CDP-glucose_46-dehydratase, CDP-glucose 4,6-dehydratase
GCF_000223215.1_ASM22321v1	NC_017243	Brachyspira intermedia PWS/A, complete sequence	8	2657551-2657648	8	CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	TTATTATTGCTATGCTCGCCTCAAA	25	0	0	NA	NA	NA	1	1	Orphan	cas4,DinG,csa3	NA|221aa|up_9|NC_017243.1_2646603_2647266_-,NA|247aa|up_5|NC_017243.1_2651012_2651753_-,NA|222aa|down_0|NC_017243.1_2658036_2658702_+,NA|202aa|down_2|NC_017243.1_2659263_2659869_+,NA|175aa|down_8|NC_017243.1_2666008_2666533_-,NA|49aa|down_9|NC_017243.1_2666550_2666697_-	NA|221aa|up_9|NC_017243.1_2646603_2647266_-	NA	NA|110aa|up_8|NC_017243.1_2647941_2648271_-	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|239aa|up_7|NC_017243.1_2648754_2649471_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|231aa|up_6|NC_017243.1_2649793_2650486_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|247aa|up_5|NC_017243.1_2651012_2651753_-	NA	NA|221aa|up_4|NC_017243.1_2651749_2652412_-	pfam02517, Abi, CAAX protease self-immunity	NA|449aa|up_3|NC_017243.1_2652386_2653733_-	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component	NA|365aa|up_2|NC_017243.1_2653944_2655039_-	TIGR03603, cyclo_dehy_ocin, thiazole/oxazole-forming peptide maturase, SagC family component	NA|338aa|up_1|NC_017243.1_2655092_2656106_-	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC	NA|355aa|up_0|NC_017243.1_2656441_2657506_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|222aa|down_0|NC_017243.1_2658036_2658702_+	NA	NA|136aa|down_1|NC_017243.1_2658839_2659247_+	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|202aa|down_2|NC_017243.1_2659263_2659869_+	NA	NA|583aa|down_3|NC_017243.1_2660485_2662234_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|551aa|down_4|NC_017243.1_2662282_2663935_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|143aa|down_5|NC_017243.1_2664160_2664589_-	sd00045, ANK, ankyrin repeats	NA|158aa|down_6|NC_017243.1_2664731_2665205_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|265aa|down_7|NC_017243.1_2665201_2665996_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|175aa|down_8|NC_017243.1_2666008_2666533_-	NA	NA|49aa|down_9|NC_017243.1_2666550_2666697_-	NA
GCF_000223215.1_ASM22321v1	NC_017243	Brachyspira intermedia PWS/A, complete sequence	9	3060791-3060893	9	CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	AATATTTTACTGATTCATATACTTC	25	0	0	NA	NA	NA	1	1	Orphan	cas4,DinG,csa3	NA|365aa|up_8|NC_017243.1_3049918_3051013_-,NA|278aa|down_0|NC_017243.1_3061791_3062625_+,NA|125aa|down_1|NC_017243.1_3062697_3063072_-,NA|158aa|down_2|NC_017243.1_3063226_3063700_+,NA|855aa|down_4|NC_017243.1_3064806_3067371_-,NA|192aa|down_7|NC_017243.1_3070596_3071172_+	NA|90aa|up_9|NC_017243.1_3049644_3049914_-	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]	NA|365aa|up_8|NC_017243.1_3049918_3051013_-	NA	NA|535aa|up_7|NC_017243.1_3051111_3052716_+	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|265aa|up_6|NC_017243.1_3052790_3053585_+	PRK09618, flgD, flagellar hook assembly protein FlgD	NA|199aa|up_5|NC_017243.1_3054198_3054795_-	PHA00370, III, attachment protein	NA|136aa|up_4|NC_017243.1_3054837_3055245_-	PHA00684, PHA00684, hypothetical protein	NA|129aa|up_3|NC_017243.1_3055283_3055670_-	pfam06803, DUF1232, Protein of unknown function (DUF1232)	NA|236aa|up_2|NC_017243.1_3055688_3056396_-	pfam12787, EcsC, EcsC protein family	NA|291aa|up_1|NC_017243.1_3056528_3057401_-	COG2461, COG2461, Uncharacterized conserved protein [Function unknown]	NA|394aa|up_0|NC_017243.1_3057585_3058767_+	cd00249, AGE, AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid	NA|278aa|down_0|NC_017243.1_3061791_3062625_+	NA	NA|125aa|down_1|NC_017243.1_3062697_3063072_-	NA	NA|158aa|down_2|NC_017243.1_3063226_3063700_+	NA	NA|302aa|down_3|NC_017243.1_3063904_3064810_-	TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family	NA|855aa|down_4|NC_017243.1_3064806_3067371_-	NA	NA|799aa|down_5|NC_017243.1_3067612_3070009_-	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|97aa|down_6|NC_017243.1_3070284_3070575_+	pfam06291, Lambda_Bor, Bor protein	NA|192aa|down_7|NC_017243.1_3070596_3071172_+	NA	NA|258aa|down_8|NC_017243.1_3071960_3072734_-	pfam10020, DUF2262, Uncharacterized protein conserved in bacteria (DUF2262)	NA|268aa|down_9|NC_017243.1_3072927_3073731_-	pfam10020, DUF2262, Uncharacterized protein conserved in bacteria (DUF2262)
GCF_000223215.1_ASM22321v1	NC_017243	Brachyspira intermedia PWS/A, complete sequence	10	3087665-3087781	10	CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	ATAATAATTATTTTGGTATGGAT	23	0	0	NA	NA	NA	2	2	Orphan	cas4,DinG,csa3	NA|192aa|up_7|NC_017243.1_3070596_3071172_+,NA|828aa|up_4|NC_017243.1_3073758_3076242_-,NA|138aa|down_0|NC_017243.1_3088548_3088962_-,NA|302aa|down_2|NC_017243.1_3089654_3090560_-	NA|799aa|up_9|NC_017243.1_3067612_3070009_-	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|97aa|up_8|NC_017243.1_3070284_3070575_+	pfam06291, Lambda_Bor, Bor protein	NA|192aa|up_7|NC_017243.1_3070596_3071172_+	NA	NA|258aa|up_6|NC_017243.1_3071960_3072734_-	pfam10020, DUF2262, Uncharacterized protein conserved in bacteria (DUF2262)	NA|268aa|up_5|NC_017243.1_3072927_3073731_-	pfam10020, DUF2262, Uncharacterized protein conserved in bacteria (DUF2262)	NA|828aa|up_4|NC_017243.1_3073758_3076242_-	NA	NA|1109aa|up_3|NC_017243.1_3076900_3080227_-	pfam13569, DUF4132, Domain of unknown function (DUF4132)	NA|556aa|up_2|NC_017243.1_3080425_3082093_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|664aa|up_1|NC_017243.1_3083090_3085082_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|304aa|up_0|NC_017243.1_3085883_3086795_-	PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional	NA|138aa|down_0|NC_017243.1_3088548_3088962_-	NA	NA|167aa|down_1|NC_017243.1_3089076_3089577_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|302aa|down_2|NC_017243.1_3089654_3090560_-	NA	NA|457aa|down_3|NC_017243.1_3093392_3094763_+	pfam04466, Terminase_3, Phage terminase large subunit	NA|218aa|down_4|NC_017243.1_3095412_3096066_-	PRK01362, PRK01362, fructose-6-phosphate aldolase	NA|284aa|down_5|NC_017243.1_3096150_3097002_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|198aa|down_6|NC_017243.1_3097136_3097730_+	cd04501, SGNH_hydrolase_like_4, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|89aa|down_7|NC_017243.1_3097733_3098000_-	pfam13428, TPR_14, Tetratricopeptide repeat	NA|405aa|down_8|NC_017243.1_3098119_3099334_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|166aa|down_9|NC_017243.1_3099632_3100130_+	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain
GCF_000223215.1_ASM22321v1	NC_017243	Brachyspira intermedia PWS/A, complete sequence	11	3087980-3088051	11	CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	ATAATAATTATTTTGGTATGGAT	23	0	0	NA	NA	NA	1	1	Orphan	cas4,DinG,csa3	NA|192aa|up_7|NC_017243.1_3070596_3071172_+,NA|828aa|up_4|NC_017243.1_3073758_3076242_-,NA|138aa|down_0|NC_017243.1_3088548_3088962_-,NA|302aa|down_2|NC_017243.1_3089654_3090560_-	NA|799aa|up_9|NC_017243.1_3067612_3070009_-	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|97aa|up_8|NC_017243.1_3070284_3070575_+	pfam06291, Lambda_Bor, Bor protein	NA|192aa|up_7|NC_017243.1_3070596_3071172_+	NA	NA|258aa|up_6|NC_017243.1_3071960_3072734_-	pfam10020, DUF2262, Uncharacterized protein conserved in bacteria (DUF2262)	NA|268aa|up_5|NC_017243.1_3072927_3073731_-	pfam10020, DUF2262, Uncharacterized protein conserved in bacteria (DUF2262)	NA|828aa|up_4|NC_017243.1_3073758_3076242_-	NA	NA|1109aa|up_3|NC_017243.1_3076900_3080227_-	pfam13569, DUF4132, Domain of unknown function (DUF4132)	NA|556aa|up_2|NC_017243.1_3080425_3082093_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|664aa|up_1|NC_017243.1_3083090_3085082_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|304aa|up_0|NC_017243.1_3085883_3086795_-	PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional	NA|138aa|down_0|NC_017243.1_3088548_3088962_-	NA	NA|167aa|down_1|NC_017243.1_3089076_3089577_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|302aa|down_2|NC_017243.1_3089654_3090560_-	NA	NA|457aa|down_3|NC_017243.1_3093392_3094763_+	pfam04466, Terminase_3, Phage terminase large subunit	NA|218aa|down_4|NC_017243.1_3095412_3096066_-	PRK01362, PRK01362, fructose-6-phosphate aldolase	NA|284aa|down_5|NC_017243.1_3096150_3097002_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|198aa|down_6|NC_017243.1_3097136_3097730_+	cd04501, SGNH_hydrolase_like_4, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|89aa|down_7|NC_017243.1_3097733_3098000_-	pfam13428, TPR_14, Tetratricopeptide repeat	NA|405aa|down_8|NC_017243.1_3098119_3099334_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|166aa|down_9|NC_017243.1_3099632_3100130_+	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain
GCF_000223215.1_ASM22321v1	NC_017243	Brachyspira intermedia PWS/A, complete sequence	12	3088247-3088329	12	CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	ATAATAATTATTTTGGTATGGAT	23	0	0	NA	NA	NA	1	1	Orphan	cas4,DinG,csa3	NA|192aa|up_7|NC_017243.1_3070596_3071172_+,NA|828aa|up_4|NC_017243.1_3073758_3076242_-,NA|138aa|down_0|NC_017243.1_3088548_3088962_-,NA|302aa|down_2|NC_017243.1_3089654_3090560_-	NA|799aa|up_9|NC_017243.1_3067612_3070009_-	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|97aa|up_8|NC_017243.1_3070284_3070575_+	pfam06291, Lambda_Bor, Bor protein	NA|192aa|up_7|NC_017243.1_3070596_3071172_+	NA	NA|258aa|up_6|NC_017243.1_3071960_3072734_-	pfam10020, DUF2262, Uncharacterized protein conserved in bacteria (DUF2262)	NA|268aa|up_5|NC_017243.1_3072927_3073731_-	pfam10020, DUF2262, Uncharacterized protein conserved in bacteria (DUF2262)	NA|828aa|up_4|NC_017243.1_3073758_3076242_-	NA	NA|1109aa|up_3|NC_017243.1_3076900_3080227_-	pfam13569, DUF4132, Domain of unknown function (DUF4132)	NA|556aa|up_2|NC_017243.1_3080425_3082093_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|664aa|up_1|NC_017243.1_3083090_3085082_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|304aa|up_0|NC_017243.1_3085883_3086795_-	PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional	NA|138aa|down_0|NC_017243.1_3088548_3088962_-	NA	NA|167aa|down_1|NC_017243.1_3089076_3089577_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|302aa|down_2|NC_017243.1_3089654_3090560_-	NA	NA|457aa|down_3|NC_017243.1_3093392_3094763_+	pfam04466, Terminase_3, Phage terminase large subunit	NA|218aa|down_4|NC_017243.1_3095412_3096066_-	PRK01362, PRK01362, fructose-6-phosphate aldolase	NA|284aa|down_5|NC_017243.1_3096150_3097002_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|198aa|down_6|NC_017243.1_3097136_3097730_+	cd04501, SGNH_hydrolase_like_4, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|89aa|down_7|NC_017243.1_3097733_3098000_-	pfam13428, TPR_14, Tetratricopeptide repeat	NA|405aa|down_8|NC_017243.1_3098119_3099334_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|166aa|down_9|NC_017243.1_3099632_3100130_+	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain
