The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_016043	Taylorella asinigenitalis MCE3, complete sequence	1638559	47802	105766	1638559	plate,tRNA,protease	Stx2-converting_phage(12.5%)	50	NA	NA
WP_014110738.1|47802_49599_+|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_014110739.1|49641_50073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014110740.1|50199_50835_+|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_014110741.1|50838_51792_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_044977853.1|51795_53094_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_014110743.1|53101_53977_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_014110744.1|53977_54856_+	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_014110745.1|54861_55053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044977856.1|55024_55669_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014110747.1|55678_56971_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	34.2	9.0e-52
WP_014110748.1|56999_57878_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_014110749.1|57874_58174_+	DUF493 family protein	NA	NA	NA	NA	NA
WP_014110750.1|58173_58827_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_014110751.1|58894_59278_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_044977858.1|59325_59847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014110753.1|60059_61046_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_014110754.1|61046_62561_+	GDP-mannose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	41.2	3.7e-65
WP_014110755.1|62553_63915_-	MFS transporter	NA	NA	NA	NA	NA
WP_014110756.1|63916_65299_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7I9	Chrysochromulina_ericina_virus	37.9	1.4e-34
WP_014110757.1|65310_66141_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_014110758.1|66174_67053_-	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	38.8	1.3e-41
WP_014110759.1|67204_68074_+	lipid A biosynthesis acyltransferase	NA	NA	NA	NA	NA
WP_044977860.1|68036_69410_-	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.7	2.1e-59
WP_014110761.1|69458_70421_+|tRNA	methionyl-tRNA formyltransferase	tRNA	NA	NA	NA	NA
WP_014110762.1|70413_71706_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_044977862.1|71671_72385_+	DUF4390 domain-containing protein	NA	NA	NA	NA	NA
WP_014110764.1|72357_74679_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	23.5	3.8e-08
WP_014110765.1|74756_75497_+	response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	29.3	1.9e-06
WP_014110766.1|75505_76882_+	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
WP_014110767.1|76890_78363_+	potassium transporter Trk	NA	NA	NA	NA	NA
WP_014110768.1|78366_78837_-|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_044977864.1|78839_79541_-	ComF family protein	NA	NA	NA	NA	NA
WP_014110770.1|79588_80506_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_014110771.1|80495_81725_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_014110772.1|81874_84721_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	28.1	2.2e-79
WP_014110773.1|84769_87334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014110774.1|87448_87925_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_014110775.1|88156_88666_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_014110776.1|88678_90028_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_014110777.1|90038_91376_+	DotU family type VI secretion system protein	NA	NA	NA	NA	NA
WP_044977866.1|91387_95014_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_014110779.1|95015_95738_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA	NA
WP_014110780.1|95743_98587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014110781.1|98676_99744_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_014110782.1|99781_100315_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_014110783.1|100323_101817_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_014110784.1|101885_102371_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_014110785.1|102464_103298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014110786.1|103307_103871_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_014110787.1|103870_105766_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
>prophage 2
NC_016043	Taylorella asinigenitalis MCE3, complete sequence	1638559	237378	248306	1638559		Synechococcus_phage(22.22%)	13	NA	NA
WP_014110922.1|237378_238320_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	36.5	2.8e-42
WP_014110923.1|238362_238848_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	54.3	2.4e-21
WP_014110924.1|238860_239736_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	9.8e-10
WP_014110925.1|239745_240681_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_014110926.1|240673_241279_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_014110927.1|241291_242050_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.2	8.5e-18
WP_014110928.1|242046_242667_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_014110929.1|242670_243294_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_014110930.1|243295_243874_-	HAD hydrolase family protein	NA	A0A222YVZ6	Synechococcus_phage	34.7	3.7e-13
WP_014110931.1|243883_244861_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	33.5	3.7e-34
WP_014110932.1|244909_245446_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	2.1e-31
WP_014110933.1|245449_246958_-	threonine ammonia-lyase, biosynthetic	NA	A0A1W6JHY1	Lactococcus_phage	23.0	4.3e-05
WP_014110934.1|246992_248306_-	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	30.8	1.1e-28
>prophage 3
NC_016043	Taylorella asinigenitalis MCE3, complete sequence	1638559	252159	259673	1638559		uncultured_marine_virus(16.67%)	9	NA	NA
WP_014110939.1|252159_252639_+	adenylyltransferase/cytidyltransferase family protein	NA	A0A0F7LBI5	uncultured_marine_virus	37.6	3.7e-11
WP_014110940.1|252635_253319_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	33.1	8.8e-14
WP_014110941.1|253346_254156_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_014110942.1|254251_255475_+	polyphosphate kinase 2	NA	NA	NA	NA	NA
WP_014110943.1|255547_256915_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.5	6.0e-38
WP_014110944.1|256923_257931_+	asparaginase	NA	NA	NA	NA	NA
WP_014110945.1|257934_258603_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.9	1.8e-56
WP_014110946.1|258580_259012_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	41.7	1.7e-23
WP_028884644.1|259013_259673_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A218M2Y8	Acidovorax_phage	35.6	3.0e-11
>prophage 4
NC_016043	Taylorella asinigenitalis MCE3, complete sequence	1638559	322580	333602	1638559		Bacillus_phage(33.33%)	9	NA	NA
WP_014111001.1|322580_323822_+	aminoacetone oxidase family FAD-binding enzyme	NA	A0A2H4PQX1	Staphylococcus_phage	45.5	1.8e-09
WP_014111002.1|323810_325016_-	cobalamin-independent methionine synthase II family protein	NA	NA	NA	NA	NA
WP_014111003.1|325127_326207_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_014111004.1|326223_326589_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_014111005.1|326595_329553_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	49.5	6.7e-260
WP_014111006.1|329554_330349_+	thymidylate synthase	NA	A6M9A2	Geobacillus_virus	68.9	4.0e-111
WP_014111007.1|330351_330858_+	dihydrofolate reductase	NA	A0A0S2MU93	Bacillus_phage	42.8	1.5e-34
WP_014111008.1|330847_332122_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1H3J6	Paramecium_bursaria_Chlorella_virus	28.4	7.6e-27
WP_014111009.1|332174_333602_-	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	26.9	1.6e-33
>prophage 5
NC_016043	Taylorella asinigenitalis MCE3, complete sequence	1638559	417608	429948	1638559	integrase	Acinetobacter_phage(18.18%)	23	406913:406925	423101:423113
406913:406925	attL	TTTGTTTCTACTG	NA	NA	NA	NA
WP_014111085.1|417608_418574_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	37.4	1.5e-48
WP_014111086.1|418719_419040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044977946.1|419082_419262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049885992.1|419271_419898_-	DNA adenine methylase	NA	A2I2Y7	Vibrio_virus	41.5	1.7e-40
WP_014111088.1|419903_420068_-	DNA adenine methylase	NA	NA	NA	NA	NA
WP_044977950.1|420054_420285_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014111090.1|420290_420671_-	single-stranded DNA-binding protein	NA	A0A077SK05	Escherichia_phage	44.9	2.7e-20
WP_081462466.1|420671_421031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014111092.1|421056_421311_-	phage protein	NA	NA	NA	NA	NA
WP_044977953.1|421303_421498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014111093.1|421494_421974_-	siphovirus Gp157 family protein	NA	Q9T0Y7	Lactobacillus_phage	37.1	2.3e-16
WP_014111094.1|421970_422858_-	ATP-binding protein	NA	A0A1B1P9H8	Acinetobacter_phage	53.0	2.3e-54
WP_014111095.1|422847_423054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144312775.1|423253_423472_-	hypothetical protein	NA	NA	NA	NA	NA
423101:423113	attR	TTTGTTTCTACTG	NA	NA	NA	NA
WP_014111098.1|423811_424261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144312777.1|424271_424958_-	helix-turn-helix transcriptional regulator	NA	F1C5C2	Cronobacter_phage	34.3	8.8e-14
WP_014111100.1|425064_425295_+	helix-turn-helix domain-containing protein	NA	D0UIL8	Aggregatibacter_phage	50.8	1.9e-13
WP_044977956.1|425275_425674_+	recombination protein NinB	NA	A0A0H5AUD0	Pseudomonas_phage	50.0	9.9e-18
WP_014111102.1|425660_425933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014111103.1|425929_426859_+	transcriptional activator adenine-specific DNA methyltransferase-like protein	NA	A0A1B1IPY1	uncultured_Mediterranean_phage	35.1	2.4e-22
WP_144312786.1|426944_428339_+	DEAD/DEAH box helicase family protein	NA	A0A0U2BUD5	Paracoccus_phage	37.9	4.1e-66
WP_044977958.1|428331_429168_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_044977961.1|429627_429948_+	DUF1064 domain-containing protein	NA	Q6JIF9	Burkholderia_virus	47.7	1.7e-15
>prophage 6
NC_016043	Taylorella asinigenitalis MCE3, complete sequence	1638559	451275	465459	1638559		Pectobacterium_phage(14.29%)	10	NA	NA
WP_049885994.1|451275_452001_+	glycoside hydrolase family 104 protein	NA	H9C1A7	Pectobacterium_phage	43.1	2.4e-25
WP_014111135.1|451997_462056_+	hypothetical protein	NA	A0A2I7RNS1	Vibrio_phage	24.1	9.2e-43
WP_014111136.1|462068_462239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014111137.1|462228_462699_+	lysozyme	NA	B6SCV1	Bacteriophage	57.2	2.5e-36
WP_014111138.1|462695_463040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014111139.1|463247_463421_-	type II toxin-antitoxin system HicA family toxin	NA	A0A0M4RCZ9	Salmonella_phage	55.6	3.1e-08
WP_014111140.1|463430_463709_-	DUF1902 domain-containing protein	NA	NA	NA	NA	NA
WP_014111141.1|464170_464848_-	helix-turn-helix transcriptional regulator	NA	F1C5C2	Cronobacter_phage	29.4	9.6e-13
WP_014111142.1|464963_465212_+	helix-turn-helix domain-containing protein	NA	D0UIL8	Aggregatibacter_phage	37.7	2.9e-07
WP_081462448.1|465195_465459_+	recombination protein NinB	NA	A0A076GCY8	Sinorhizobium_phage	41.3	1.2e-06
>prophage 7
NC_016043	Taylorella asinigenitalis MCE3, complete sequence	1638559	738419	749694	1638559	tRNA	Moraxella_phage(22.22%)	12	NA	NA
WP_014111399.1|738419_740024_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	30.5	1.4e-57
WP_014111400.1|740023_740626_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	40.8	1.8e-23
WP_014111401.1|740615_741911_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	37.3	2.7e-64
WP_014111402.1|742050_743085_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	52.5	5.6e-89
WP_014111403.1|743068_743656_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_014111404.1|743720_744491_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	43.6	3.4e-54
WP_014111405.1|744491_745265_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	45.8	7.1e-28
WP_014111406.1|745292_745982_+	peptidoglycan DD-metalloendopeptidase family protein	NA	Q8SBN9	Clostridium_phage	36.7	7.5e-13
WP_014111407.1|746043_746745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014111408.1|746787_748110_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.7	1.6e-27
WP_014111409.1|748106_748826_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_014111410.1|748911_749694_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.6	1.6e-19
>prophage 8
NC_016043	Taylorella asinigenitalis MCE3, complete sequence	1638559	1108398	1120411	1638559	tRNA	Bacillus_phage(33.33%)	8	NA	NA
WP_014111733.1|1108398_1110414_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	29.4	2.1e-76
WP_014111734.1|1110448_1111735_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	45.7	1.7e-95
WP_014111735.1|1111737_1112340_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A2H4J538	uncultured_Caudovirales_phage	42.2	1.6e-27
WP_014111736.1|1112423_1114628_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.1	9.8e-107
WP_014111737.1|1114630_1115902_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_014111738.1|1115898_1116537_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	37.2	2.9e-27
WP_014111739.1|1116585_1117551_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_014111740.1|1117540_1120411_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	24.2	3.5e-72
>prophage 9
NC_016043	Taylorella asinigenitalis MCE3, complete sequence	1638559	1279790	1288539	1638559	tRNA	Vibrio_phage(16.67%)	8	NA	NA
WP_014111877.1|1279790_1281368_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A067ZJB6	Vibrio_phage	27.9	7.0e-14
WP_014111878.1|1281371_1283111_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	36.6	4.4e-94
WP_014111879.1|1283110_1284049_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_014111880.1|1284022_1285078_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	45.6	1.5e-73
WP_014111881.1|1285147_1285831_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_014111882.1|1285857_1287213_+	polynucleotide adenylyltransferase PcnB	NA	A0A172Q0J1	Acinetobacter_phage	36.5	1.3e-24
WP_014111883.1|1287205_1287697_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4VNV0	Pandoravirus	35.7	3.7e-14
WP_044978116.1|1287678_1288539_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	40.9	2.2e-54
