assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000230895.2_ASM23089v3	NC_016604	Mycolicibacterium rhodesiae NBB3, complete sequence	1	952639-952736	1	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4	Orphan	GGCCACGACGGCGGCGCCGACGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4	NA|121aa|up_3|NC_016604.1_949949_950312_+,NA|92aa|up_0|NC_016604.1_952190_952466_+,NA|72aa|down_3|NC_016604.1_955384_955600_-,NA|156aa|down_7|NC_016604.1_959213_959681_+	NA|857aa|up_9|NC_016604.1_940758_943329_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|1120aa|up_8|NC_016604.1_943773_947133_+	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]	NA|224aa|up_7|NC_016604.1_947542_948214_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|98aa|up_6|NC_016604.1_948224_948518_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|119aa|up_5|NC_016604.1_948523_948880_+	cd18732, PIN_MtVapC4-C5_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|330aa|up_4|NC_016604.1_948904_949894_+	pfam02732, ERCC4, ERCC4 domain	NA|121aa|up_3|NC_016604.1_949949_950312_+	NA	NA|154aa|up_2|NC_016604.1_950365_950827_+	TIGR04102, SEC-C_motif_domain_protein, SWIM/SEC-C metal-binding motif protein, PBPRA1643 family	NA|370aa|up_1|NC_016604.1_950823_951933_+	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein	NA|92aa|up_0|NC_016604.1_952190_952466_+	NA	NA|403aa|down_0|NC_016604.1_952753_953962_+	pfam08007, Cupin_4, Cupin superfamily protein	NA|295aa|down_1|NC_016604.1_953958_954843_+	COG4759, COG4759, Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_2|NC_016604.1_954855_955380_+	cd12108, Hr-like, Hemerythrin-like domain	NA|72aa|down_3|NC_016604.1_955384_955600_-	NA	NA|224aa|down_4|NC_016604.1_955629_956301_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|333aa|down_5|NC_016604.1_956474_957473_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|403aa|down_6|NC_016604.1_957755_958964_-	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|156aa|down_7|NC_016604.1_959213_959681_+	NA	NA|484aa|down_8|NC_016604.1_959892_961344_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|338aa|down_9|NC_016604.1_961401_962415_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family
GCF_000230895.2_ASM23089v3	NC_016604	Mycolicibacterium rhodesiae NBB3, complete sequence	2	1094372-1094499	2	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4	Orphan	GCGGCGGTCCCGGCGGGGGTGGCGGC	26	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,csa3,DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4	NA|165aa|up_6|NC_016604.1_1089175_1089670_+,NA|73aa|down_4|NC_016604.1_1099654_1099873_-,NA|369aa|down_6|NC_016604.1_1100856_1101963_-	NA|205aa|up_9|NC_016604.1_1085634_1086249_+	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family	NA|454aa|up_8|NC_016604.1_1086366_1087728_+	COG5305, COG5305, Predicted membrane protein [Function unknown]	NA|448aa|up_7|NC_016604.1_1087830_1089174_+	cd00321, SO_family_Moco, Sulfite oxidase (SO) family, molybdopterin binding domain	NA|165aa|up_6|NC_016604.1_1089175_1089670_+	NA	NA|210aa|up_5|NC_016604.1_1089676_1090306_-	pfam13847, Methyltransf_31, Methyltransferase domain	NA|222aa|up_4|NC_016604.1_1090305_1090971_-	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|219aa|up_3|NC_016604.1_1090967_1091624_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|238aa|up_2|NC_016604.1_1091726_1092440_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|342aa|up_1|NC_016604.1_1092429_1093455_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|150aa|up_0|NC_016604.1_1093625_1094075_+	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|422aa|down_0|NC_016604.1_1094690_1095956_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|272aa|down_1|NC_016604.1_1097031_1097847_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|344aa|down_2|NC_016604.1_1097846_1098878_-	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|260aa|down_3|NC_016604.1_1098874_1099654_-	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|73aa|down_4|NC_016604.1_1099654_1099873_-	NA	NA|292aa|down_5|NC_016604.1_1099943_1100819_+	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|369aa|down_6|NC_016604.1_1100856_1101963_-	NA	NA|192aa|down_7|NC_016604.1_1101959_1102535_-	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|419aa|down_8|NC_016604.1_1102563_1103820_+	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|115aa|down_9|NC_016604.1_1103823_1104168_-	pfam07366, SnoaL, SnoaL-like polyketide cyclase
GCF_000230895.2_ASM23089v3	NC_016604	Mycolicibacterium rhodesiae NBB3, complete sequence	3	1427123-1427223	3	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4	Orphan	GTTGTCGTGGTGGTCGTCGTGGT	23	1	1	1427146-1427161	NC_016604.1_2808618-2808633	NA	2	2	Orphan	cas3,WYL,csa3,DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4	NA|225aa|up_5|NC_016604.1_1420595_1421270_-,NA|161aa|down_4|NC_016604.1_1432283_1432766_+	NA|443aa|up_9|NC_016604.1_1413406_1414735_-	TIGR02462, Pyranose_2-oxidase, pyranose oxidase	NA|719aa|up_8|NC_016604.1_1414739_1416896_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|960aa|up_7|NC_016604.1_1416972_1419852_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|258aa|up_6|NC_016604.1_1419811_1420585_+	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase	NA|225aa|up_5|NC_016604.1_1420595_1421270_-	NA	NA|255aa|up_4|NC_016604.1_1421423_1422188_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|526aa|up_3|NC_016604.1_1422218_1423796_+	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|258aa|up_2|NC_016604.1_1423792_1424566_+	smart01007, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|423aa|up_1|NC_016604.1_1424597_1425866_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|376aa|up_0|NC_016604.1_1425889_1427017_+	PRK10811, rne, ribonuclease E; Reviewed	NA|153aa|down_0|NC_016604.1_1428886_1429345_+	pfam13577, SnoaL_4, SnoaL-like domain	NA|217aa|down_1|NC_016604.1_1429348_1429999_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|497aa|down_2|NC_016604.1_1430119_1431610_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|229aa|down_3|NC_016604.1_1431548_1432235_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|down_4|NC_016604.1_1432283_1432766_+	NA	NA|161aa|down_5|NC_016604.1_1432780_1433263_+	pfam01459, Porin_3, Eukaryotic porin	NA|536aa|down_6|NC_016604.1_1433259_1434867_-	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|458aa|down_7|NC_016604.1_1435025_1436399_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_8|NC_016604.1_1436466_1437270_+	pfam09037, Sulphotransf, Stf0 sulphotransferase	NA|304aa|down_9|NC_016604.1_1437266_1438178_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD
GCF_000230895.2_ASM23089v3	NC_016604	Mycolicibacterium rhodesiae NBB3, complete sequence	4	3495966-3496042	4	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4	Orphan	GTCGACCACATCGGACCGCTGGGCGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4	NA|99aa|up_3|NC_016604.1_3492814_3493111_+,NA|104aa|up_2|NC_016604.1_3493172_3493484_-,NA	NA|116aa|up_9|NC_016604.1_3486346_3486694_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|153aa|up_8|NC_016604.1_3486727_3487186_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|354aa|up_7|NC_016604.1_3487625_3488687_+	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]	NA|229aa|up_6|NC_016604.1_3488702_3489389_-	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|507aa|up_5|NC_016604.1_3489385_3490906_-	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|458aa|up_4|NC_016604.1_3491283_3492657_+	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|99aa|up_3|NC_016604.1_3492814_3493111_+	NA	NA|104aa|up_2|NC_016604.1_3493172_3493484_-	NA	NA|400aa|up_1|NC_016604.1_3493501_3494701_-	PRK08256, PRK08256, lipid-transfer protein; Provisional	NA|114aa|up_0|NC_016604.1_3494828_3495170_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|383aa|down_0|NC_016604.1_3497144_3498293_-	COG3629, DnrI, DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]	NA|350aa|down_1|NC_016604.1_3498362_3499412_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|249aa|down_2|NC_016604.1_3499408_3500155_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|348aa|down_3|NC_016604.1_3500151_3501195_-	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members	NA|242aa|down_4|NC_016604.1_3501203_3501929_-	cd07535, HAD_VSP, vegetative storage proteins similar to soybean VSPalpha and VSPbeta proteins; belongs to the haloacid dehalogenase-like superfamily	NA|285aa|down_5|NC_016604.1_3501981_3502836_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|311aa|down_6|NC_016604.1_3502837_3503770_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|149aa|down_7|NC_016604.1_3503785_3504232_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|176aa|down_8|NC_016604.1_3504499_3505027_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|140aa|down_9|NC_016604.1_3505023_3505443_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain
GCF_000230895.2_ASM23089v3	NC_016604	Mycolicibacterium rhodesiae NBB3, complete sequence	5	4690674-4690762	5	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4	Orphan	GATTGCGCGAAGCCCGTGGCGGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4	NA,NA|62aa|down_8|NC_016604.1_4703152_4703338_+	NA|350aa|up_9|NC_016604.1_4677061_4678111_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|413aa|up_8|NC_016604.1_4678107_4679346_+	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA|311aa|up_7|NC_016604.1_4679342_4680275_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|397aa|up_6|NC_016604.1_4680271_4681462_+	PRK03244, argD, acetylornithine transaminase	NA|308aa|up_5|NC_016604.1_4681458_4682382_+	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|164aa|up_4|NC_016604.1_4682378_4682870_+	PRK03341, PRK03341, arginine repressor; Provisional	NA|405aa|up_3|NC_016604.1_4682871_4684086_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|471aa|up_2|NC_016604.1_4684114_4685527_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|583aa|up_1|NC_016604.1_4685523_4687272_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|987aa|up_0|NC_016604.1_4687410_4690371_+	PRK07868, PRK07868, acyl-CoA synthetase; Validated	NA|72aa|down_0|NC_016604.1_4691123_4691339_+	COG2835, COG2835, Uncharacterized conserved protein [Function unknown]	NA|205aa|down_1|NC_016604.1_4691321_4691936_-	pfam17920, TetR_C_16, Tetracyclin repressor-like, C-terminal domain	NA|240aa|down_2|NC_016604.1_4691941_4692661_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|252aa|down_3|NC_016604.1_4692711_4693467_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|204aa|down_4|NC_016604.1_4693526_4694138_+	PRK00802, PRK00802, DNA-3-methyladenine glycosylase	NA|428aa|down_5|NC_016604.1_4694156_4695440_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|261aa|down_6|NC_016604.1_4701337_4702120_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|341aa|down_7|NC_016604.1_4702121_4703144_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|62aa|down_8|NC_016604.1_4703152_4703338_+	NA	NA|270aa|down_9|NC_016604.1_4703344_4704154_+	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
GCF_000230895.2_ASM23089v3	NC_016604	Mycolicibacterium rhodesiae NBB3, complete sequence	6	6218735-6218818	6	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4	Orphan	GTGCCAAGGGTGCCAAGCCCCCG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4	NA|143aa|up_7|NC_016604.1_6212570_6212999_-,NA|90aa|up_0|NC_016604.1_6218141_6218411_-,NA|523aa|down_0|NC_016604.1_6218846_6220415_-,NA|93aa|down_1|NC_016604.1_6220529_6220808_-,NA|226aa|down_3|NC_016604.1_6221126_6221804_+	NA|94aa|up_9|NC_016604.1_6209092_6209374_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|1029aa|up_8|NC_016604.1_6209370_6212457_-	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein	NA|143aa|up_7|NC_016604.1_6212570_6212999_-	NA	NA|224aa|up_6|NC_016604.1_6213077_6213749_-	pfam17925, TetR_C_20, Tetracyclin repressor-like, C-terminal domain	NA|172aa|up_5|NC_016604.1_6213745_6214261_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|239aa|up_4|NC_016604.1_6214367_6215084_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|400aa|up_3|NC_016604.1_6215064_6216264_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|194aa|up_2|NC_016604.1_6216327_6216909_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|256aa|up_1|NC_016604.1_6217320_6218088_-	pfam13384, HTH_23, Homeodomain-like domain	NA|90aa|up_0|NC_016604.1_6218141_6218411_-	NA	NA|523aa|down_0|NC_016604.1_6218846_6220415_-	NA	NA|93aa|down_1|NC_016604.1_6220529_6220808_-	NA	NA|74aa|down_2|NC_016604.1_6220854_6221076_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|226aa|down_3|NC_016604.1_6221126_6221804_+	NA	NA|394aa|down_4|NC_016604.1_6221800_6222982_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|425aa|down_5|NC_016604.1_6223186_6224461_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|545aa|down_6|NC_016604.1_6224457_6226092_-	PRK07564, PRK07564, phosphoglucomutase; Validated	NA|192aa|down_7|NC_016604.1_6226147_6226723_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|158aa|down_8|NC_016604.1_6226735_6227209_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|123aa|down_9|NC_016604.1_6227244_6227613_-	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]
