assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000231925.1_ASM23192v1	NC_017950	Streptococcus suis ST1, complete sequence	1	213954-214050	1	CRISPRCasFinder	no		cas3,DinG,PrimPol,csn2,cas2,cas1,cas9,csa3,DEDDh	Orphan	CCCAACCCGCACAGCTCCAACAGT	24	1	1	213978-214026	NC_017950.1_213488-213536	NA	1	1	Orphan	cas3,DinG,PrimPol,csn2,cas2,cas1,cas9,csa3,DEDDh	NA,NA|104aa|down_6|NC_017950.1_224124_224436_+	NA|314aa|up_9|NC_017950.1_201359_202301_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|184aa|up_8|NC_017950.1_202297_202849_+	COG3797, COG3797, Uncharacterized protein conserved in bacteria [Function unknown]	NA|264aa|up_7|NC_017950.1_202930_203722_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|782aa|up_6|NC_017950.1_203904_206250_-	cd01678, PFL1, Pyruvate formate lyase 1	NA|356aa|up_5|NC_017950.1_206564_207632_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|140aa|up_4|NC_017950.1_207674_208094_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|209aa|up_3|NC_017950.1_208332_208959_+	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|307aa|up_2|NC_017950.1_209062_209983_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|232aa|up_1|NC_017950.1_210121_210817_-	PRK11907, PRK11907, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|831aa|up_0|NC_017950.1_210922_213415_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|210aa|down_0|NC_017950.1_214275_214905_-	TIGR02227, Inactive_signal_peptidase_IA	NA|297aa|down_1|NC_017950.1_214914_215805_-	PRK00996, PRK00996, ribonuclease HIII; Provisional	NA|328aa|down_2|NC_017950.1_215889_216873_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|542aa|down_3|NC_017950.1_219419_221045_-	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|665aa|down_4|NC_017950.1_221125_223120_-	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component	NA|238aa|down_5|NC_017950.1_223353_224067_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|104aa|down_6|NC_017950.1_224124_224436_+	NA	NA|183aa|down_7|NC_017950.1_224432_224981_+	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|778aa|down_8|NC_017950.1_225472_227806_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|105aa|down_9|NC_017950.1_228752_229067_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin
GCF_000231925.1_ASM23192v1	NC_017950	Streptococcus suis ST1, complete sequence	2	680888-680982	2	CRISPRCasFinder	no		cas3,DinG,PrimPol,csn2,cas2,cas1,cas9,csa3,DEDDh	Orphan	ACAAGAAGGACCATAAGTACCGT	23	1	4	680911-680959|680911-680959|680911-680959|680911-680959	NC_017950.1_680003-680051|NC_017950.1_680303-680351|NC_017950.1_680603-680651|NC_017950.1_681211-681259	NA	1	1	Orphan	cas3,DinG,PrimPol,csn2,cas2,cas1,cas9,csa3,DEDDh	NA|162aa|up_3|NC_017950.1_674777_675263_+,NA|348aa|up_0|NC_017950.1_677420_678464_+,NA	NA|228aa|up_9|NC_017950.1_669852_670536_+	COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only]	NA|265aa|up_8|NC_017950.1_670525_671320_+	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3)	NA|283aa|up_7|NC_017950.1_671436_672284_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|275aa|up_6|NC_017950.1_672393_673218_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|290aa|up_5|NC_017950.1_673315_674185_+	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|198aa|up_4|NC_017950.1_674184_674778_+	cd00438, cupin_RmlC, RmlC carbohydrate epimerase, involved in dTDP-L-rhamnose production	NA|162aa|up_3|NC_017950.1_674777_675263_+	NA	NA|349aa|up_2|NC_017950.1_675451_676498_+	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]	NA|284aa|up_1|NC_017950.1_676552_677404_+	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|348aa|up_0|NC_017950.1_677420_678464_+	NA	NA|145aa|down_0|NC_017950.1_682370_682805_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|283aa|down_1|NC_017950.1_682839_683687_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|850aa|down_2|NC_017950.1_683756_686306_-	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|383aa|down_3|NC_017950.1_686518_687667_+	cd04955, GT4-like, glycosyltransferase family 4 proteins	NA|310aa|down_4|NC_017950.1_687663_688593_+	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|269aa|down_5|NC_017950.1_688595_689402_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|405aa|down_6|NC_017950.1_689401_690616_+	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|575aa|down_7|NC_017950.1_690636_692361_+	pfam05045, RgpF, Rhamnan synthesis protein F	NA|420aa|down_8|NC_017950.1_692393_693653_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|436aa|down_9|NC_017950.1_693649_694957_+	pfam09913, DUF2142, Predicted membrane protein (DUF2142)
GCF_000231925.1_ASM23192v1	NC_017950	Streptococcus suis ST1, complete sequence	3	1532274-1532366	3	CRISPRCasFinder	no		cas3,DinG,PrimPol,csn2,cas2,cas1,cas9,csa3,DEDDh	Orphan	ACGAGCCGCAGGCATAACTGGAA	23	1	7	1532297-1532343|1532297-1532343|1532297-1532343|1532297-1532343|1532297-1532343|1532297-1532343|1532297-1532343	NC_017950.1_705789-705743|NC_017950.1_1127617-1127663|NC_017950.1_1532734-1532780|NC_017950.1_1755224-1755270|NC_017950.1_1975244-1975290|NC_017950.1_140471-140425|NC_017950.1_643441-643395	NA	1	1	Orphan	cas3,DinG,PrimPol,csn2,cas2,cas1,cas9,csa3,DEDDh	NA,NA	NA|350aa|up_9|NC_017950.1_1524928_1525978_-	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]	NA|163aa|up_8|NC_017950.1_1525964_1526453_-	cd02163, PPAT, Phosphopantetheine adenylyltransferase	NA|180aa|up_7|NC_017950.1_1526442_1526982_-	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95	NA|241aa|up_6|NC_017950.1_1527290_1528013_-	pfam18449, Endotoxin_C2, Delta endotoxin	NA|129aa|up_5|NC_017950.1_1528069_1528456_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|73aa|up_4|NC_017950.1_1528455_1528674_-	pfam06014, DUF910, Bacterial protein of unknown function (DUF910)	NA|183aa|up_3|NC_017950.1_1528957_1529506_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|365aa|up_2|NC_017950.1_1529502_1530597_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|244aa|up_1|NC_017950.1_1530605_1531337_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|293aa|up_0|NC_017950.1_1531333_1532212_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|173aa|down_0|NC_017950.1_1533008_1533527_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|71aa|down_1|NC_017950.1_1533728_1533941_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|145aa|down_2|NC_017950.1_1534110_1534545_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|141aa|down_3|NC_017950.1_1534676_1535099_+	COG4642, COG4642, Uncharacterized protein conserved in bacteria [Function unknown]	NA|600aa|down_4|NC_017950.1_1535088_1536888_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|218aa|down_5|NC_017950.1_1537111_1537765_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|186aa|down_6|NC_017950.1_1537789_1538347_-	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|182aa|down_7|NC_017950.1_1538670_1539216_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|80aa|down_8|NC_017950.1_1539783_1540023_-	PRK00041, PRK00041, hypothetical protein; Validated	NA|244aa|down_9|NC_017950.1_1540022_1540754_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
GCF_000231925.1_ASM23192v1	NC_017950	Streptococcus suis ST1, complete sequence	4	1773477-1773738	1	PILER-CR	no		cas3,DinG,PrimPol,csn2,cas2,cas1,cas9,csa3,DEDDh	Orphan	AAGACGAACTCTTTTTAGACAGGTCGAGTTCTTTCCCACTCCCATTTCCAAATTGATT	58	2	5	1773535-1773596|1773655-1773713|1773655-1773713|1773655-1773713|1773655-1773713	NC_017950.1_1773739-1773800|NC_017950.1_1773418-1773476|NC_017950.1_166137-166195|NC_017950.1_1707826-1707768|NC_017950.1_1808273-1808215	NA	2	2	Orphan	cas3,DinG,PrimPol,csn2,cas2,cas1,cas9,csa3,DEDDh	NA|62aa|up_7|NC_017950.1_1763945_1764131_-,NA|177aa|down_0|NC_017950.1_1774832_1775363_-,NA|170aa|down_1|NC_017950.1_1777495_1778005_-,NA|71aa|down_6|NC_017950.1_1781743_1781956_-	NA|133aa|up_9|NC_017950.1_1762200_1762599_-	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and    repair]	NA|448aa|up_8|NC_017950.1_1762591_1763935_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|62aa|up_7|NC_017950.1_1763945_1764131_-	NA	NA|258aa|up_6|NC_017950.1_1764124_1764898_-	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|206aa|up_5|NC_017950.1_1764912_1765530_-	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]	NA|740aa|up_4|NC_017950.1_1765583_1767803_-	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|90aa|up_3|NC_017950.1_1768138_1768408_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|426aa|up_2|NC_017950.1_1768611_1769889_-	PRK10720, PRK10720, uracil transporter; Provisional	NA|632aa|up_1|NC_017950.1_1770084_1771980_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|430aa|up_0|NC_017950.1_1771976_1773266_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|177aa|down_0|NC_017950.1_1774832_1775363_-	NA	NA|170aa|down_1|NC_017950.1_1777495_1778005_-	NA	NA|437aa|down_2|NC_017950.1_1778421_1779732_-	TIGR03173, pbuX, xanthine permease	NA|194aa|down_3|NC_017950.1_1779948_1780530_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|243aa|down_4|NC_017950.1_1780571_1781300_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|150aa|down_5|NC_017950.1_1781290_1781740_-	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|71aa|down_6|NC_017950.1_1781743_1781956_-	NA	NA|390aa|down_7|NC_017950.1_1782213_1783383_-	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily	NA|205aa|down_8|NC_017950.1_1783512_1784127_+	PRK00150, def, peptide deformylase; Reviewed	NA|262aa|down_9|NC_017950.1_1784209_1784995_-	TIGR00057, Putative_threonylcarbamoyl-AMP_synthase, tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family
