assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000237125.2_ASM23712v3	NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	1	775524-775609	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CAATGCGAGTTGGGGTGGGGCCCCAACA	28	1	1	775552-775581	NC_016928.2_816623-816594	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|69aa|up_9|NC_016928.2_762367_762574_+,NA|34aa|down_1|NC_016928.2_777052_777154_+,NA|52aa|down_8|NC_016928.2_785318_785474_+	NA|69aa|up_9|NC_016928.2_762367_762574_+	NA	NA|237aa|up_8|NC_016928.2_762670_763381_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_016928.2_763364_764369_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_016928.2_764842_766783_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_016928.2_767053_768937_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_016928.2_768948_770730_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_016928.2_770951_771929_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_016928.2_771921_773436_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_016928.2_773675_774734_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_016928.2_774892_775435_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_016928.2_776042_776960_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_016928.2_777052_777154_+	NA	NA|502aa|down_2|NC_016928.2_777231_778737_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_016928.2_779076_779577_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_016928.2_779596_780463_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_016928.2_781263_781662_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_016928.2_781624_783730_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_016928.2_783847_784819_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_016928.2_785318_785474_+	NA	NA|324aa|down_9|NC_016928.2_785512_786484_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000237125.2_ASM23712v3	NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	2	952771-952928	1,2	PILER-CR,CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCATTGCTTGTAGAATCTCTTTTCGAAATTCT,TCTTTTCGAAATTCTCTGTGTTGGGGCCC	39,29	1	11	952878-952896|952878-952896|952878-952896|952878-952896|952878-952896|952878-952896|952878-952896|952878-952896|952878-952896|952878-952896|952878-952896	NC_016928.2_831049-831067|NC_016928.2_1292847-1292865|NC_016928.2_1292905-1292923|NC_016928.2_1986482-1986500|NC_016928.2_2326703-2326685|NC_016928.2_183926-183944|NC_016928.2_622547-622529|NC_016928.2_932605-932587|NC_016928.2_1151537-1151519|NC_016928.2_1367484-1367502|NC_016928.2_1706269-1706287	NA:NA	2,1	2	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|192aa|up_9|NC_016928.2_939209_939785_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|NC_016928.2_939789_940314_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|NC_016928.2_940329_940905_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|NC_016928.2_941064_944541_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|NC_016928.2_944541_948195_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|NC_016928.2_948360_949263_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|NC_016928.2_949590_949980_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|NC_016928.2_950151_951468_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|NC_016928.2_951519_952344_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|NC_016928.2_952457_952766_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|605aa|down_0|NC_016928.2_953419_955234_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|870aa|down_1|NC_016928.2_955436_958046_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_2|NC_016928.2_958104_958974_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|382aa|down_3|NC_016928.2_959083_960229_+	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	NA|214aa|down_4|NC_016928.2_960212_960854_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|172aa|down_5|NC_016928.2_961948_962464_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_6|NC_016928.2_962774_963209_+	pfam03642, MAP, MAP domain	NA|62aa|down_7|NC_016928.2_963465_963651_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_8|NC_016928.2_963945_964887_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|415aa|down_9|NC_016928.2_964898_966143_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II
GCF_000237125.2_ASM23712v3	NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	3	1071296-1071388	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	AAAAGCCCCTAACAACTAAAGGTTGTAAGG	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|45aa|down_0|NC_016928.2_1071397_1071532_-,NA|432aa|down_1|NC_016928.2_1071683_1072979_+	NA|224aa|up_9|NC_016928.2_1059090_1059762_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NC_016928.2_1059754_1061944_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NC_016928.2_1061922_1063407_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NC_016928.2_1063399_1064428_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NC_016928.2_1064430_1064997_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NC_016928.2_1065011_1066490_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NC_016928.2_1066511_1067759_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NC_016928.2_1068024_1068831_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NC_016928.2_1068823_1070224_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NC_016928.2_1070238_1070814_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NC_016928.2_1071397_1071532_-	NA	NA|432aa|down_1|NC_016928.2_1071683_1072979_+	NA	NA|391aa|down_2|NC_016928.2_1073403_1074576_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NC_016928.2_1074629_1075172_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NC_016928.2_1075325_1075592_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NC_016928.2_1075594_1077313_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NC_016928.2_1077549_1077783_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NC_016928.2_1077980_1079342_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NC_016928.2_1079338_1080358_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NC_016928.2_1080490_1081153_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000237125.2_ASM23712v3	NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	4	1155534-1155786	2	PILER-CR	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGA	27	4	33	1155561-1155589|1155561-1155589|1155561-1155589|1155561-1155589|1155561-1155589|1155561-1155589|1155561-1155589|1155561-1155589|1155561-1155589|1155561-1155589|1155617-1155645|1155673-1155711|1155673-1155711|1155673-1155711|1155673-1155711|1155673-1155711|1155673-1155711|1155673-1155711|1155673-1155711|1155673-1155711|1155739-1155767|1155739-1155767|1155739-1155767|1155739-1155767|1155739-1155767|1155739-1155767|1155739-1155767|1155739-1155767|1155739-1155767|1155739-1155767|1155739-1155767|1155739-1155767|1155739-1155767	NC_016928.2_831047-831019|NC_016928.2_1055129-1055101|NC_016928.2_1671210-1671182|NC_016928.2_1986480-1986452|NC_016928.2_2788857-2788829|NC_016928.2_887719-887747|NC_016928.2_1151653-1151681|NC_016928.2_1686514-1686542|NC_016928.2_821881-821853|NC_016928.2_1985024-1984996|NC_016928.2_785002-785030|NC_016928.2_785002-785040|NC_016928.2_183924-183886|NC_016928.2_622549-622587|NC_016928.2_622605-622643|NC_016928.2_785058-785096|NC_016928.2_830933-830895|NC_016928.2_1155787-1155825|NC_016928.2_2292475-2292437|NC_016928.2_2326760-2326798|NC_016928.2_830989-830961|NC_016928.2_867238-867210|NC_016928.2_1292732-1292704|NC_016928.2_1986539-1986511|NC_016928.2_2209955-2209927|NC_016928.2_2462348-2462320|NC_016928.2_887606-887634|NC_016928.2_1686570-1686598|NC_016928.2_2615203-2615231|NC_016928.2_821937-821909|NC_016928.2_831104-831076|NC_016928.2_1670965-1670937|NC_016928.2_789515-789543	NA	4	4	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|169aa|up_7|NC_016928.2_1149375_1149882_+,NA|62aa|up_4|NC_016928.2_1151857_1152043_-,NA|78aa|up_3|NC_016928.2_1152661_1152895_-,NA|49aa|up_1|NC_016928.2_1155003_1155150_+,NA|75aa|up_0|NC_016928.2_1155106_1155331_+,NA|76aa|down_6|NC_016928.2_1162798_1163026_+	NA|110aa|up_9|NC_016928.2_1147607_1147937_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|133aa|up_8|NC_016928.2_1148306_1148705_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NC_016928.2_1149375_1149882_+	NA	NA|166aa|up_6|NC_016928.2_1150140_1150638_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NC_016928.2_1150791_1151142_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NC_016928.2_1151857_1152043_-	NA	NA|78aa|up_3|NC_016928.2_1152661_1152895_-	NA	NA|320aa|up_2|NC_016928.2_1153371_1154331_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NC_016928.2_1155003_1155150_+	NA	NA|75aa|up_0|NC_016928.2_1155106_1155331_+	NA	NA|239aa|down_0|NC_016928.2_1156000_1156717_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NC_016928.2_1156824_1157550_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NC_016928.2_1157644_1158370_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NC_016928.2_1158807_1159809_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NC_016928.2_1159831_1160764_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|497aa|down_5|NC_016928.2_1161000_1162491_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NC_016928.2_1162798_1163026_+	NA	NA|316aa|down_7|NC_016928.2_1163331_1164279_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NC_016928.2_1164528_1164717_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NC_016928.2_1165629_1165764_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_000237125.2_ASM23712v3	NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	5	1230138-1230230	4	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|215aa|up_9|NC_016928.2_1220012_1220657_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NC_016928.2_1220663_1221305_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NC_016928.2_1221686_1221875_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NC_016928.2_1222317_1222692_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NC_016928.2_1222706_1224353_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NC_016928.2_1224542_1226603_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NC_016928.2_1226804_1227377_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NC_016928.2_1227381_1228368_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NC_016928.2_1228360_1229287_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NC_016928.2_1229279_1230014_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NC_016928.2_1230319_1230553_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NC_016928.2_1230668_1231400_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NC_016928.2_1231546_1235113_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NC_016928.2_1235112_1236363_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NC_016928.2_1236349_1236682_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NC_016928.2_1236707_1238075_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NC_016928.2_1238420_1238696_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NC_016928.2_1238883_1239387_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NC_016928.2_1239386_1240124_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NC_016928.2_1240226_1240577_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_000237125.2_ASM23712v3	NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	6	1438197-1438276	5	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|68aa|up_5|NC_016928.2_1429677_1429881_-,NA	NA|379aa|up_9|NC_016928.2_1424027_1425164_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|448aa|up_8|NC_016928.2_1425237_1426581_-	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism]	NA|629aa|up_7|NC_016928.2_1426805_1428692_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|264aa|up_6|NC_016928.2_1428705_1429497_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|68aa|up_5|NC_016928.2_1429677_1429881_-	NA	NA|270aa|up_4|NC_016928.2_1429909_1430719_-	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|423aa|up_3|NC_016928.2_1431298_1432567_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|933aa|up_2|NC_016928.2_1432580_1435379_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|452aa|up_1|NC_016928.2_1435667_1437023_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|220aa|up_0|NC_016928.2_1437019_1437679_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|205aa|down_0|NC_016928.2_1438820_1439435_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|357aa|down_1|NC_016928.2_1439451_1440522_-	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	NA|170aa|down_2|NC_016928.2_1440533_1441043_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|497aa|down_3|NC_016928.2_1441442_1442933_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|74aa|down_4|NC_016928.2_1443124_1443346_-	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|down_5|NC_016928.2_1443345_1443846_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|143aa|down_6|NC_016928.2_1443857_1444286_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|178aa|down_7|NC_016928.2_1444278_1444812_-	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|280aa|down_8|NC_016928.2_1444901_1445741_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|160aa|down_9|NC_016928.2_1445755_1446235_-	pfam00186, DHFR_1, Dihydrofolate reductase
GCF_000237125.2_ASM23712v3	NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	7	1985029-1985110	6	CRISPRCasFinder	no	DEDDh	WYL,cas3,DEDDh,DinG,csa3	Unclear	TGTTGGGGCCCCGCCAACCTGCATT	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|92aa|up_6|NC_016928.2_1979226_1979502_+,NA|129aa|up_1|NC_016928.2_1983484_1983871_-,NA|138aa|down_1|NC_016928.2_1986793_1987207_-,NA|37aa|down_2|NC_016928.2_1987235_1987346_-,NA|31aa|down_6|NC_016928.2_1990351_1990444_-	NA|419aa|up_9|NC_016928.2_1977149_1978406_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NC_016928.2_1978408_1978609_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NC_016928.2_1978755_1979220_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NC_016928.2_1979226_1979502_+	NA	NA|406aa|up_5|NC_016928.2_1979779_1980997_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NC_016928.2_1981109_1981739_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NC_016928.2_1981728_1982772_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NC_016928.2_1982768_1983470_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NC_016928.2_1983484_1983871_-	NA	NA|253aa|up_0|NC_016928.2_1984087_1984846_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NC_016928.2_1985374_1986361_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NC_016928.2_1986793_1987207_-	NA	NA|37aa|down_2|NC_016928.2_1987235_1987346_-	NA	NA|244aa|down_3|NC_016928.2_1987431_1988163_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NC_016928.2_1988164_1989478_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NC_016928.2_1989769_1990270_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NC_016928.2_1990351_1990444_-	NA	DEDDh|185aa|down_7|NC_016928.2_1990660_1991215_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NC_016928.2_1991281_1992352_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NC_016928.2_1992598_1993129_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_000237125.2_ASM23712v3	NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	8	2044800-2044885	7	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TGTTGAGGCCCCACCCCAACTTACATTGT	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|59aa|up_6|NC_016928.2_2034940_2035117_-,NA|33aa|up_5|NC_016928.2_2035358_2035457_-,NA	NA|227aa|up_9|NC_016928.2_2032445_2033126_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|299aa|up_8|NC_016928.2_2033126_2034023_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|127aa|up_7|NC_016928.2_2034019_2034400_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|59aa|up_6|NC_016928.2_2034940_2035117_-	NA	NA|33aa|up_5|NC_016928.2_2035358_2035457_-	NA	NA|429aa|up_4|NC_016928.2_2035656_2036943_+	PRK08637, PRK08637, hypothetical protein; Provisional	NA|331aa|up_3|NC_016928.2_2039347_2040340_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|up_2|NC_016928.2_2040832_2041849_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NC_016928.2_2041870_2042926_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NC_016928.2_2043361_2044585_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NC_016928.2_2045025_2046333_+	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|539aa|down_1|NC_016928.2_2046873_2048490_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NC_016928.2_2048565_2048850_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NC_016928.2_2049024_2049768_+	pfam02517, Abi, CAAX protease self-immunity	NA|400aa|down_4|NC_016928.2_2049792_2050992_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NC_016928.2_2051188_2051815_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NC_016928.2_2052175_2052961_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NC_016928.2_2053559_2053694_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|190aa|down_8|NC_016928.2_2053929_2054499_+	smart00793, AgrB, Accessory gene regulator B	NA|47aa|down_9|NC_016928.2_2054495_2054636_+	pfam05931, AgrD, Staphylococcal AgrD protein
GCF_000237125.2_ASM23712v3	NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	9	2292382-2292466	8	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTATGCTGACTTT	30	1	2	2292412-2292436|2292412-2292436	NC_016928.2_1880662-1880686|NC_016928.2_2292468-2292492	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|55aa|up_9|NC_016928.2_2282889_2283054_+,NA|106aa|up_8|NC_016928.2_2283298_2283616_+,NA|84aa|up_5|NC_016928.2_2288740_2288992_+,NA|57aa|up_0|NC_016928.2_2292132_2292303_+,NA	NA|55aa|up_9|NC_016928.2_2282889_2283054_+	NA	NA|106aa|up_8|NC_016928.2_2283298_2283616_+	NA	NA|1056aa|up_7|NC_016928.2_2283802_2286970_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_016928.2_2287086_2288352_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_016928.2_2288740_2288992_+	NA	NA|255aa|up_4|NC_016928.2_2288983_2289748_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_016928.2_2289910_2290351_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_016928.2_2290343_2291555_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_016928.2_2291656_2292007_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NC_016928.2_2292132_2292303_+	NA	NA|341aa|down_0|NC_016928.2_2292643_2293666_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_016928.2_2293685_2294285_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_016928.2_2294291_2294525_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_016928.2_2294530_2294977_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_016928.2_2294990_2295476_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_016928.2_2295472_2296732_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_016928.2_2296794_2297289_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_016928.2_2297290_2297797_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_016928.2_2297827_2298832_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_016928.2_2299000_2299606_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_000237125.2_ASM23712v3	NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	10	2446948-2447040	9	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TTCTTCAAATTTATTTGTTAGAAAG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|35aa|up_2|NC_016928.2_2444601_2444706_+,NA|32aa|down_0|NC_016928.2_2447244_2447340_-	NA|200aa|up_9|NC_016928.2_2438078_2438678_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NC_016928.2_2438696_2439059_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NC_016928.2_2439313_2440564_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NC_016928.2_2440660_2441392_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NC_016928.2_2441388_2442108_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NC_016928.2_2442088_2442868_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NC_016928.2_2442988_2444428_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NC_016928.2_2444601_2444706_+	NA	NA|229aa|up_1|NC_016928.2_2444859_2445546_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NC_016928.2_2445871_2446738_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|32aa|down_0|NC_016928.2_2447244_2447340_-	NA	NA|437aa|down_1|NC_016928.2_2447434_2448745_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NC_016928.2_2449236_2450166_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NC_016928.2_2450733_2451681_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NC_016928.2_2451682_2452660_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NC_016928.2_2452711_2453179_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NC_016928.2_2453189_2453882_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NC_016928.2_2453892_2455008_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NC_016928.2_2454985_2455993_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NC_016928.2_2455994_2457353_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_000237125.2_ASM23712v3	NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	11	2788763-2788848	10	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	12	2788793-2788818|2788793-2788818|2788793-2788818|2788793-2788818|2788793-2788818|2788793-2788818|2788793-2788818|2788793-2788818|2788793-2788818|2788793-2788818|2788793-2788818|2788793-2788818	NC_016928.2_622613-622588|NC_016928.2_1155795-1155770|NC_016928.2_1292780-1292805|NC_016928.2_785010-784985|NC_016928.2_785066-785041|NC_016928.2_1851842-1851817|NC_016928.2_2326768-2326743|NC_016928.2_830925-830950|NC_016928.2_2034754-2034779|NC_016928.2_2210007-2210032|NC_016928.2_2130694-2130669|NC_016928.2_2131032-2131007	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|64aa|up_6|NC_016928.2_2784240_2784432_+,NA|166aa|up_5|NC_016928.2_2785038_2785536_-,NA|64aa|up_4|NC_016928.2_2785992_2786184_+,NA	NA|171aa|up_9|NC_016928.2_2780717_2781230_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|up_8|NC_016928.2_2781519_2782278_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_7|NC_016928.2_2782267_2784148_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_6|NC_016928.2_2784240_2784432_+	NA	NA|166aa|up_5|NC_016928.2_2785038_2785536_-	NA	NA|64aa|up_4|NC_016928.2_2785992_2786184_+	NA	NA|67aa|up_3|NC_016928.2_2786575_2786776_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NC_016928.2_2786902_2787472_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NC_016928.2_2787722_2788118_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NC_016928.2_2788185_2788539_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NC_016928.2_2789148_2789988_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NC_016928.2_2790030_2790750_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NC_016928.2_2790749_2792627_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NC_016928.2_2792693_2794073_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NC_016928.2_2794216_2794570_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NC_016928.2_2794690_2794828_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
