The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	2795015	753874	761694	2795015		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|753874_754930_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|754929_755616_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|755590_756064_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|756405_756846_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|757125_757710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|757808_758522_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|758525_758945_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|758946_759615_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604508.1|759965_760559_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_001217800.1|760542_761694_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	6.0e-23
>prophage 2
NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	2795015	773675	788185	2795015		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663039.1|773675_774734_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.4e-21
WP_000197262.1|774892_775435_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429011.1|776042_776960_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	6.2e-07
WP_031760357.1|777052_777154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|777231_778737_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|779076_779577_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|779596_780463_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|781263_781662_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855509.1|781624_783730_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562498.1|783847_784819_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|785318_785474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876317.1|785512_786484_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	3.6e-138
WP_001245572.1|786470_787427_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616873.1|787423_788185_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	2795015	868819	890320	2795015	coat,terminase,integrase	Staphylococcus_phage(77.78%)	33	867126:867147	887788:887809
867126:867147	attL	AGGGAGTGGGACAGAAATGATA	NA	NA	NA	NA
WP_000571213.1|868819_869845_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
WP_000520233.1|869837_870533_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732334.1|870550_871372_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000266157.1|871514_872735_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000733774.1|872822_873551_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	5.5e-22
WP_001033318.1|873574_874303_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	1.0e-28
WP_001228759.1|874372_874804_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|874820_875279_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|875290_875623_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243851.1|875815_876079_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|876071_876344_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|876355_876502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|876494_876704_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103942.1|876706_877027_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002732.1|877090_877960_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_000390454.1|877976_879446_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	99.0	2.9e-288
WP_001039168.1|879731_880094_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998181.1|880095_880380_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001019764.1|880376_881018_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_001190615.1|881534_881876_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|881887_882466_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448773.1|882483_882702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771368.1|882752_883280_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_045181470.1|883411_883624_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_001293067.1|883620_884190_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000278085.1|884497_885298_+	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001035631.1|885375_885933_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_001795626.1|886306_886459_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000139423.1|886529_886640_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_000382163.1|886626_886827_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000752917.1|887950_888145_+	CsbD family protein	NA	NA	NA	NA	NA
887788:887809	attR	TATCATTTCTGTCCCACTCCCT	NA	NA	NA	NA
WP_001183851.1|888378_889230_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|889558_890320_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 4
NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	2795015	978592	1022310	2795015	transposase,tRNA,protease,holin,bacteriocin	Streptococcus_phage(33.33%)	39	NA	NA
WP_000277724.1|978592_980239_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.9	2.4e-291
WP_000448937.1|980264_981254_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|981548_981944_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|982314_983034_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959298.1|983154_984141_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|984188_985997_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|986456_987263_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|987285_987651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|987754_988348_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242107.1|988533_988881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|988897_989533_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|989549_990359_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669925.1|990355_991210_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|991230_992616_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395162.1|992625_994470_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|994748_995519_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|995715_996801_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570701.1|997142_998711_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889183.1|998853_999612_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060547.1|999777_1000503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000355328.1|1000504_1001356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600387.1|1002090_1002600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001824107.1|1002712_1003921_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1003880_1005056_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340127.1|1005488_1006973_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001798480.1|1006953_1007214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049958.1|1007213_1008776_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.2e-35
WP_000928413.1|1009077_1009881_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_078064575.1|1010096_1012421_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|1012437_1013796_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414178.1|1013934_1015446_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1015934_1016504_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1016713_1016932_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1017012_1017999_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1018197_1018374_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1018388_1018991_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_014363402.1|1019386_1021033_+|transposase	IS1182 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	99.3	3.7e-292
WP_099112139.1|1021316_1021394_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_029656376.1|1022043_1022310_+|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
>prophage 5
NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	2795015	1056524	1064997	2795015		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861570.1|1056524_1057007_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010401.1|1056993_1058118_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174047.1|1058121_1058826_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	1.4e-46
WP_000848350.1|1058825_1059089_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1059090_1059762_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032747.1|1059754_1061944_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.8e-140
WP_000483727.1|1061922_1063407_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	1.6e-44
WP_000030810.1|1063399_1064428_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238670.1|1064430_1064997_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 6
NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	2795015	1322942	1330446	2795015	capsid	Staphylococcus_phage(87.5%)	14	NA	NA
WP_001659797.1|1322942_1323140_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_078065144.1|1323829_1324054_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001002343.1|1324349_1324556_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_001788716.1|1325251_1325362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1325790_1325976_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477491.1|1326487_1326592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956747.1|1326718_1326970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001813273.1|1327443_1327698_+	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	62.7	1.4e-25
WP_000780597.1|1327697_1327892_+	hypothetical protein	NA	A0A1J0MG79	Staphylococcus_phage	71.4	2.8e-18
WP_071665623.1|1327952_1328081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000440735.1|1328047_1328326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078097461.1|1328843_1329494_+|capsid	minor capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	54.2	1.7e-59
WP_001217295.1|1329504_1329699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064137920.1|1329777_1330446_+|capsid	minor capsid protein	capsid	Q4ZE35	Staphylococcus_virus	70.7	1.5e-29
>prophage 7
NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	2795015	1504744	1586727	2795015	terminase,portal,holin,protease,head,capsid,tail,tRNA,integrase	Staphylococcus_phage(83.75%)	106	1564562:1564576	1582544:1582558
WP_000858801.1|1504744_1506037_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.5e-54
WP_000525064.1|1506358_1509052_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.6	1.1e-46
WP_000049916.1|1509075_1510047_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361537.1|1510033_1511236_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	5.4e-35
WP_000690024.1|1511240_1512383_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1512640_1512958_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1513293_1513974_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154692.1|1514045_1514633_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005216.1|1514622_1515198_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_078065170.1|1515211_1516315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245912.1|1516462_1517761_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776330.1|1517770_1518835_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269940.1|1518860_1520027_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
WP_000789522.1|1520413_1520614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442477.1|1520823_1521273_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_078062714.1|1521364_1522309_-	heptaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1522325_1523051_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1523053_1523626_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1524056_1524329_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161742.1|1524499_1525498_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1525514_1526825_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133960.1|1527041_1528217_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_031844924.1|1528472_1528664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031844926.1|1528780_1528885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644394.1|1528927_1529587_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681761.1|1529663_1530632_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1530746_1531733_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001824277.1|1531893_1532010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069308.1|1532134_1533595_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902114.1|1533747_1535127_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.2e-56
WP_001163813.1|1535116_1536070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1536177_1536426_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186908.1|1536531_1537077_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000476869.1|1537479_1538424_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476889.1|1538481_1539387_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_061820357.1|1539477_1539729_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	96.7	2.0e-24
WP_024937002.1|1539911_1540895_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239544.1|1540890_1541829_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PF61	Staphylococcus_phage	100.0	1.7e-180
WP_000909204.1|1542218_1543673_-	CHAP domain-containing protein	NA	A0A2I6PF47	Staphylococcus_phage	100.0	7.5e-289
WP_000339141.1|1543683_1543986_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000340977.1|1544111_1544486_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040259.1|1544541_1544829_-	hypothetical protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
WP_001153681.1|1544875_1545028_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582126.1|1545017_1548803_-	hypothetical protein	NA	G4KNR1	Staphylococcus_phage	100.0	0.0e+00
WP_000567420.1|1548818_1550303_-|tail	phage tail protein	tail	G4KNR0	Staphylococcus_phage	100.0	1.6e-299
WP_000504558.1|1550302_1554844_-|tail	phage tail tape measure protein	tail	A0A2I6PE03	Staphylococcus_phage	100.0	0.0e+00
WP_001096355.1|1555088_1555439_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1555488_1555713_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268740.1|1555754_1556399_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|1556399_1556807_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|1556803_1557208_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|1557204_1557567_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1557550_1557835_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1557824_1558109_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|1558128_1559274_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|1559297_1560035_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025272.1|1560018_1561206_-|portal	phage portal protein	portal	G4KNQ1	Staphylococcus_phage	100.0	4.6e-220
WP_000625097.1|1561221_1562883_-|terminase	terminase large subunit	terminase	G4KNQ0	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1562879_1563224_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988330.1|1563354_1563654_-	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000590123.1|1563885_1564302_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	99.3	1.9e-75
WP_000265043.1|1564329_1564530_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_001005262.1|1564529_1565180_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
1564562:1564576	attL	TAATTCTTTCTTTTA	NA	NA	NA	NA
WP_000501856.1|1565338_1565503_-	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	100.0	3.9e-21
WP_001125015.1|1565490_1565691_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195782.1|1565665_1565854_-	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_001282074.1|1565850_1566096_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001061834.1|1566132_1566639_-	hypothetical protein	NA	G4KNP5	Staphylococcus_phage	100.0	1.0e-91
WP_000454994.1|1566815_1567097_-	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_001065099.1|1567260_1567512_-	DUF1024 family protein	NA	G4KNP4	Staphylococcus_phage	100.0	6.4e-39
WP_000131388.1|1567526_1567769_-	hypothetical protein	NA	A0A2I6PDU1	Staphylococcus_phage	100.0	3.9e-41
WP_000029366.1|1567772_1568129_-	hypothetical protein	NA	G4KNP3	Staphylococcus_phage	100.0	1.1e-60
WP_001187236.1|1568129_1568315_-	DUF3113 family protein	NA	A0A068A236	Staphylococcus_phage	95.1	7.8e-26
WP_000049798.1|1568319_1568724_-	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
WP_001123669.1|1568733_1568955_-	DUF3269 family protein	NA	A0A2I6PDV8	Staphylococcus_phage	100.0	1.7e-35
WP_000256594.1|1568967_1569126_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	98.1	4.5e-22
WP_000803062.1|1569119_1569899_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000190254.1|1569908_1570679_-	hypothetical protein	NA	G4KNP0	Staphylococcus_phage	100.0	6.4e-122
WP_000414755.1|1570744_1571026_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000057262.1|1571164_1571839_-	hypothetical protein	NA	G4KNN9	Staphylococcus_phage	100.0	8.6e-131
WP_001099007.1|1571850_1572294_-	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	100.0	1.4e-76
WP_000840496.1|1572290_1572941_-	single-stranded DNA-binding protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
WP_001004336.1|1572941_1573478_-	hypothetical protein	NA	A0A0F6N4M6	Staphylococcus_phage	100.0	1.4e-80
WP_001556704.1|1573490_1573751_-	DUF1108 family protein	NA	G4KNN5	Staphylococcus_phage	100.0	2.0e-43
WP_000829610.1|1573755_1574073_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	3.9e-33
WP_001285954.1|1574161_1574323_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124198.1|1574334_1574598_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001037095.1|1574627_1574846_-	hypothetical protein	NA	A0A2I6PDV4	Staphylococcus_phage	100.0	5.0e-32
WP_001662405.1|1575244_1575382_-	hypothetical protein	NA	A0ZS11	Staphylococcus_virus	97.8	3.7e-17
WP_000435343.1|1575401_1575662_-	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001148617.1|1575674_1576427_-	oxidoreductase	NA	G4KNN1	Staphylococcus_phage	100.0	1.1e-139
WP_000801108.1|1576487_1576715_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000502678.1|1576716_1576908_-	hypothetical protein	NA	A0A2I6PDT1	Staphylococcus_phage	100.0	9.5e-27
WP_000772137.1|1576964_1577174_+	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_000939495.1|1577166_1577307_-	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000435346.1|1577321_1577765_-	hypothetical protein	NA	G4KNN0	Staphylococcus_phage	100.0	2.0e-75
WP_000548578.1|1577777_1578017_-	helix-turn-helix transcriptional regulator	NA	G4KNM9	Staphylococcus_phage	100.0	2.3e-38
WP_000094093.1|1578187_1578895_+	helix-turn-helix transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	100.0	7.7e-130
WP_001089804.1|1579048_1579234_+	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_000705240.1|1579433_1579616_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|1579651_1579798_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191466.1|1579794_1580409_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1580534_1581740_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_014363427.1|1581782_1583669_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	92.5	3.1e-109
1582544:1582558	attR	TAATTCTTTCTTTTA	NA	NA	NA	NA
WP_001824281.1|1583820_1584729_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987767.1|1584975_1586727_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	2.6e-22
>prophage 8
NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	2795015	1642555	1650867	2795015	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1642555_1643341_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924210.1|1643466_1644357_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	3.4e-26
WP_001062177.1|1644366_1645713_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683914.1|1645826_1646927_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624567.1|1646929_1647607_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1647737_1648844_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217251.1|1649067_1650867_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	2795015	1721511	1730554	2795015	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1721511_1722030_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594983.1|1722051_1724325_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	2.1e-64
WP_000749798.1|1724527_1726807_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1727081_1727342_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1727360_1728500_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019166.1|1728522_1729548_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1729549_1730554_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	2795015	1856531	1902458	2795015	tRNA,protease	Staphylococcus_phage(94.29%)	43	NA	NA
WP_001050576.1|1856531_1863089_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	93.2	1.2e-290
WP_000836467.1|1863414_1863726_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	98.1	5.3e-51
WP_001108730.1|1863747_1866162_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025062.1|1866453_1867635_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.5	1.2e-217
WP_000526539.1|1867744_1868698_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764429.1|1868694_1869258_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	9.2e-102
WP_000757543.1|1869377_1869779_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266100.1|1870350_1871178_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1871180_1871300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196343.1|1871411_1872413_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	98.8	1.7e-183
WP_001008551.1|1872534_1872999_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159028.1|1873011_1874193_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.6e-225
WP_000493883.1|1874203_1874836_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	2.4e-111
WP_000384177.1|1874842_1875874_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	9.0e-196
WP_001261664.1|1876366_1877869_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.1e-29
WP_000221186.1|1878390_1878705_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	95.2	1.4e-51
WP_000989100.1|1878704_1879997_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.4	2.2e-223
WP_000163239.1|1880014_1880407_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	6.9e-72
WP_001032836.1|1880811_1881666_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.1	4.9e-38
WP_000384172.1|1881941_1882166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001153740.1|1882943_1883387_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030460.1|1883373_1883817_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.0	5.4e-57
WP_025175276.1|1884114_1884750_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_000492902.1|1884916_1885537_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096492.1|1886005_1886719_-	transaldolase	NA	M1PR54	Cyanophage	34.5	1.2e-18
WP_000091445.1|1886976_1887279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200550.1|1887534_1887900_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
WP_000623471.1|1887896_1888250_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453310.1|1888499_1889333_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	1.3e-157
WP_000366163.1|1889544_1890453_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1890577_1891771_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109912.1|1892142_1893735_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_078065176.1|1894028_1894775_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672009.1|1894779_1895253_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	3.6e-83
WP_000718107.1|1895318_1895576_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778518.1|1895572_1896574_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	4.8e-186
WP_000348384.1|1896578_1898057_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.7	3.4e-281
WP_078065177.1|1898216_1898672_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	4.0e-79
WP_078065147.1|1898974_1899625_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	68.1	1.2e-31
WP_000070638.1|1899705_1900701_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	92.7	1.7e-66
WP_000669039.1|1900776_1901403_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.6	5.8e-81
WP_000627534.1|1901443_1901785_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	93.8	2.8e-53
WP_000414219.1|1901885_1902458_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
>prophage 11
NC_016928	Staphylococcus aureus subsp. aureus M013, complete sequence	2795015	1908012	1916326	2795015		Staphylococcus_phage(77.78%)	9	NA	NA
WP_001044434.1|1908012_1908867_-	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	6.4e-06
WP_049280116.1|1909117_1909663_-	hypothetical protein	NA	A0A2H4PQP5	Staphylococcus_phage	32.5	1.8e-09
WP_000669789.1|1910079_1910259_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1910569_1910830_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1910882_1911233_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|1911917_1912367_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|1912461_1912920_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_001066124.1|1913098_1913860_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.2	1.1e-54
WP_000206347.1|1915537_1916326_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.4	7.0e-140
