assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000245515.1_ASM24551v1	NC_017656	Escherichia coli O55:H7 str. RM12579, complete sequence	1	71451-71585	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|246aa|up_4|NC_017656.1_63419_64157_+,NA|190aa|down_7|NC_017656.1_80626_81196_+	NA|274aa|up_9|NC_017656.1_56560_57382_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|NC_017656.1_57378_58368_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|NC_017656.1_58367_59654_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|783aa|up_6|NC_017656.1_59706_62055_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|NC_017656.1_62309_63125_+	PRK09430, djlA, co-chaperone DjlA	NA|246aa|up_4|NC_017656.1_63419_64157_+	NA	NA|220aa|up_3|NC_017656.1_64574_65234_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NC_017656.1_65245_68152_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NC_017656.1_68315_70667_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NC_017656.1_70741_71437_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NC_017656.1_71636_73139_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NC_017656.1_73149_74850_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NC_017656.1_75188_76067_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NC_017656.1_76152_76917_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NC_017656.1_77003_77702_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NC_017656.1_77685_79296_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NC_017656.1_79271_80255_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|190aa|down_7|NC_017656.1_80626_81196_+	NA	NA|553aa|down_8|NC_017656.1_81424_83083_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_9|NC_017656.1_83171_83303_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT
GCF_000245515.1_ASM24551v1	NC_017656	Escherichia coli O55:H7 str. RM12579, complete sequence	2	3350235-3350448	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	GCCGGTTTATCCCCGCTGGCGCGGGGAACAC,GCCGGTTTATCCCCGCTGGCGCGGGGAACAC,GCCGGTTTATCCCCGCTGGCGCGGGGAACAC	31,31,31	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NC_017656.1_3342049_3342811_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_017656.1_3342791_3343841_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_017656.1_3343837_3344317_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_017656.1_3344316_3345027_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_017656.1_3345045_3345357_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_017656.1_3345550_3345874_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_017656.1_3345923_3346529_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NC_017656.1_3346528_3347956_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_017656.1_3347957_3348866_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NC_017656.1_3349117_3350155_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_017656.1_3350544_3350838_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NC_017656.1_3350834_3351758_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NC_017656.1_3351754_3352405_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NC_017656.1_3352386_3353133_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NC_017656.1_3353143_3354199_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NC_017656.1_3354210_3354747_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NC_017656.1_3354743_3356306_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NC_017656.1_3356403_3359103_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NC_017656.1_3359294_3359447_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NC_017656.1_3359710_3360445_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000245515.1_ASM24551v1	NC_017656	Escherichia coli O55:H7 str. RM12579, complete sequence	3	3376142-3376354	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GCGGTTTATCCCCGCTGGCGCGGGGAACTC,GCGGTTTATCCCCGCTGGCGCGGGGAACTC,GCGGTTTATCCCCGCTGGCGCGGGGAACTC	30,30,30	0	0	NA	NA	I-E:I-E:I-E	3,3,3	3	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|37aa|up_1|NC_017656.1_3373890_3374001_+,NA	NA|424aa|up_9|NC_017656.1_3364788_3366060_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NC_017656.1_3366050_3366311_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NC_017656.1_3366327_3366903_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_6|NC_017656.1_3367907_3368687_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_5|NC_017656.1_3368664_3370074_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_4|NC_017656.1_3370095_3371550_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_3|NC_017656.1_3371619_3372405_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|377aa|up_2|NC_017656.1_3372723_3373854_+	cd06174, MFS, Major Facilitator Superfamily	NA|37aa|up_1|NC_017656.1_3373890_3374001_+	NA	NA|493aa|up_0|NC_017656.1_3374027_3375506_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NC_017656.1_3376693_3377365_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|NC_017656.1_3377519_3378140_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|298aa|down_2|NC_017656.1_3378153_3379047_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NC_017656.1_3379061_3380210_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|NC_017656.1_3380206_3381121_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NC_017656.1_3381180_3382479_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NC_017656.1_3382566_3384204_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NC_017656.1_3384431_3385223_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|NC_017656.1_3385293_3385629_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|NC_017656.1_3385628_3385877_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
GCF_000245515.1_ASM24551v1	NC_017656	Escherichia coli O55:H7 str. RM12579, complete sequence	4	5096627-5096776	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|270aa|down_6|NC_017656.1_5105416_5106226_+,NA|105aa|down_8|NC_017656.1_5106627_5106942_+	NA|132aa|up_9|NC_017656.1_5085080_5085476_-	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|238aa|up_8|NC_017656.1_5085606_5086320_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_7|NC_017656.1_5086390_5086984_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_6|NC_017656.1_5087128_5087581_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NC_017656.1_5089585_5090590_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NC_017656.1_5090751_5091168_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NC_017656.1_5091213_5091717_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NC_017656.1_5091909_5093106_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NC_017656.1_5093160_5096016_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NC_017656.1_5096015_5096459_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NC_017656.1_5096812_5098324_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NC_017656.1_5098590_5099691_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NC_017656.1_5099690_5100773_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NC_017656.1_5100933_5102436_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NC_017656.1_5102565_5103585_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|417aa|down_5|NC_017656.1_5104054_5105305_+	PRK09692, PRK09692, integrase; Provisional	NA|270aa|down_6|NC_017656.1_5105416_5106226_+	NA	NA|72aa|down_7|NC_017656.1_5106392_5106608_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|105aa|down_8|NC_017656.1_5106627_5106942_+	NA	NA|423aa|down_9|NC_017656.1_5107228_5108497_+	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain
