The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_016832	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete sequence	4768352	538859	544890	4768352		Salmonella_virus(50.0%)	6	NA	NA
WP_106417237.1|538859_539006_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
WP_106417236.1|539021_539165_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_000400611.1|540154_542077_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_000703599.1|542093_542348_-	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_001682026.1|542316_542706_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000377769.1|543948_544890_-	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
>prophage 2
NC_016832	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete sequence	4768352	779399	788570	4768352	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|779399_780347_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824854.1|780330_781062_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|781042_781150_-	protein YohO	NA	NA	NA	NA	NA
WP_001240415.1|781209_781941_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272853.1|782163_783849_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
WP_000598632.1|783845_784565_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|784611_785079_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|785135_785666_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|785837_786296_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195338.1|786536_788570_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 3
NC_016832	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete sequence	4768352	864461	874968	4768352		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111852.1|864461_865865_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
WP_000981469.1|866042_866936_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|867312_868398_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023656.1|868397_869297_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000857536.1|869344_870223_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_000973711.1|870223_870775_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000018220.1|870780_871755_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|871770_872544_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565909.1|872548_873628_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000126347.1|873654_874968_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 4
NC_016832	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete sequence	4768352	978991	986225	4768352		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|978991_979411_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457648.1|979413_980682_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000208507.1|981127_981340_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_024131163.1|981350_981539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|981799_982984_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_000107435.1|983634_983946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377043.1|984025_984721_+	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_001157299.1|984794_986225_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 5
NC_016832	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete sequence	4768352	1191416	1195828	4768352		Escherichia_phage(50.0%)	7	NA	NA
WP_000281950.1|1191416_1191830_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
WP_001766395.1|1191846_1192575_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000158843.1|1192766_1193309_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|1193456_1193834_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|1193906_1194716_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001036668.1|1195212_1195377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000497459.1|1195588_1195828_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
>prophage 6
NC_016832	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete sequence	4768352	1376865	1448963	4768352	protease,capsid,plate,tail,integrase,transposase,tRNA,holin	Burkholderia_virus(41.03%)	85	1414857:1414873	1447871:1447887
WP_000168626.1|1376865_1378140_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
WP_000765713.1|1378888_1379494_-	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000100913.1|1379598_1381104_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_001030324.1|1381704_1382340_-	endonuclease III	NA	NA	NA	NA	NA
WP_001289628.1|1382339_1383032_-	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_000920820.1|1383034_1383655_-	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_000231887.1|1383658_1384717_-	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000915581.1|1384717_1386739_-	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_001092600.1|1386731_1387310_-	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000133179.1|1387309_1387891_-	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_000214061.1|1387967_1388408_-	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000217946.1|1388496_1388712_-	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_031608772.1|1389010_1389136_-	division septum protein Blr	NA	NA	NA	NA	NA
WP_000998242.1|1389343_1390384_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000565566.1|1390457_1391459_-	adenosine deaminase	NA	NA	NA	NA	NA
WP_000753325.1|1392164_1393673_-	YdgA family protein	NA	NA	NA	NA	NA
WP_001170615.1|1393775_1394951_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000066606.1|1395150_1396797_+	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_000259129.1|1396964_1398368_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000092483.1|1398364_1399294_-	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_001681605.1|1399369_1400671_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000928668.1|1400781_1402488_-	amidohydrolase	NA	NA	NA	NA	NA
WP_000824321.1|1402640_1403792_-	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
WP_001080045.1|1404272_1405004_-	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000524877.1|1405130_1405466_+	GlpM family protein	NA	NA	NA	NA	NA
WP_000412353.1|1405527_1406910_-	amino acid permease	NA	NA	NA	NA	NA
WP_001165548.1|1407190_1407763_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_001802272.1|1407834_1408338_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.0	2.3e-43
WP_001057643.1|1408337_1408955_+|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_000002041.1|1408961_1409930_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	54.8	2.2e-63
WP_000852584.1|1409932_1410511_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_001219103.1|1410503_1411607_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000859114.1|1411597_1411945_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_000148263.1|1412001_1412529_-|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000808000.1|1412525_1413680_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000478221.1|1413667_1413880_-|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000458383.1|1413879_1414764_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000135574.1|1414763_1417229_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
1414857:1414873	attL	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_001148841.1|1417322_1417460_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000084228.1|1417404_1417740_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000110118.1|1417837_1418119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162828734.1|1418121_1418646_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000729859.1|1418642_1420070_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_000666498.1|1420059_1420311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001101804.1|1420310_1420775_-	Gp37 family protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000271668.1|1420774_1421221_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_000537457.1|1421222_1421561_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_001286905.1|1421570_1422524_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_001273072.1|1422538_1423654_-	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_000135517.1|1423868_1424327_-	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_000117561.1|1424329_1425151_-|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000090679.1|1425131_1426628_-	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_170825686.1|1426627_1428169_-	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000124060.1|1428219_1428765_-	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_000227700.1|1428764_1429076_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000175097.1|1429075_1429402_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000264664.1|1429398_1430049_-	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_001104436.1|1430032_1430761_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000793143.1|1430763_1431114_-|holin	putative holin	holin	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_100208317.1|1431357_1431954_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_001765083.1|1431949_1432381_+	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.3	4.5e-32
WP_000567456.1|1432390_1432555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000990529.1|1432558_1434328_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000960673.1|1434338_1435505_+	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000843446.1|1435507_1435777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|1435804_1436335_+	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000632575.1|1436623_1436896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000197790.1|1436905_1437208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|1437204_1437588_+	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_153781233.1|1437595_1437796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|1437792_1438476_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_000631816.1|1438472_1438703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989166.1|1438692_1438908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315282.1|1438900_1439350_+	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_001281695.1|1439321_1439711_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_000769298.1|1439892_1440837_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001219360.1|1441363_1442893_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000014056.1|1442903_1444292_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001118268.1|1444466_1445501_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000500278.1|1445917_1446280_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001183821.1|1446266_1446596_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000549642.1|1446630_1447452_-|protease	serine protease	protease	NA	NA	NA	NA
WP_001766314.1|1447720_1447972_-	acid shock protein	NA	NA	NA	NA	NA
1447871:1447887	attR	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_000431187.1|1448365_1448548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000502118.1|1448504_1448963_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 7
NC_016832	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete sequence	4768352	1890979	1969179	4768352	protease,tail,plate,terminase,transposase,holin,head	Salmonella_phage(71.19%)	91	NA	NA
WP_000938184.1|1890979_1891660_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.1	4.1e-80
WP_000502118.1|1891867_1892326_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000374046.1|1892989_1893649_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|1893735_1894065_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|1894061_1894343_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000502118.1|1895079_1895538_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000140485.1|1896669_1897881_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|1897938_1898256_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|1898300_1898714_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|1898887_1899550_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|1899644_1900103_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420526.1|1900138_1902193_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_001261222.1|1902316_1902763_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950867.1|1902781_1904935_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202371.1|1904921_1905527_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|1905743_1906253_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_010989142.1|1906607_1907660_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877174.1|1907731_1908184_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156455.1|1908369_1910130_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|1910198_1910717_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001764860.1|1910816_1910984_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|1911237_1911801_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|1911797_1913438_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|1913442_1914696_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053045.1|1914710_1916618_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086472.1|1916630_1918739_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000224084.1|1918837_1919947_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|1919943_1920486_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291724.1|1920651_1921662_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193884.1|1921869_1924482_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000480169.1|1925498_1926200_+	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000421106.1|1927121_1927640_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_001681975.1|1927654_1929166_-	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000049938.1|1929165_1929846_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001197092.1|1929842_1931042_-|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_001270647.1|1931042_1931396_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001685627.1|1931636_1932392_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001144794.1|1932450_1932879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050472.1|1932878_1933610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000826019.1|1933804_1934140_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000042301.1|1934136_1935168_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000388505.1|1935170_1935473_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000346974.1|1935476_1936127_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000990867.1|1936126_1938079_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000389047.1|1938256_1938709_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000257259.1|1938712_1939153_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_001135544.1|1939164_1940310_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000389379.1|1940313_1940877_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001142488.1|1940851_1941241_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000008737.1|1941227_1941782_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001125675.1|1941778_1942186_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_001040702.1|1942151_1942520_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_000627464.1|1942561_1943503_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_000128060.1|1943514_1944012_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000873182.1|1944016_1945249_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_138010671.1|1945263_1946001_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000113511.1|1945885_1947355_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_000204794.1|1947354_1948758_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_001118118.1|1948723_1949476_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_001070544.1|1949565_1949793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000495544.1|1949889_1950267_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001075998.1|1950844_1951459_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000226307.1|1951458_1951740_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294876.1|1951726_1952116_-|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000798706.1|1952332_1952782_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|1952917_1953043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047634.1|1953441_1954239_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|1954228_1954375_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096560.1|1954371_1954983_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_000929790.1|1955191_1955794_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001217670.1|1956128_1956368_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000963896.1|1956552_1957050_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000509711.1|1957060_1957240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208074.1|1958085_1958658_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000445792.1|1958661_1959135_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000065105.1|1959134_1959659_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000113623.1|1959655_1960003_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000800010.1|1960013_1960763_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_001681803.1|1960765_1961749_-	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_001574095.1|1961833_1962208_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000869365.1|1962173_1962410_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001009036.1|1962539_1962944_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000186242.1|1963232_1963433_+	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_000995349.1|1963523_1963820_+	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_001764962.1|1963825_1964611_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000187053.1|1964607_1965288_+	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_000034527.1|1965365_1966430_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_010989138.1|1966426_1967308_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_001754984.1|1967313_1967553_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_000065276.1|1967593_1967842_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262313.1|1967886_1969179_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
>prophage 8
NC_016832	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete sequence	4768352	2040239	2047551	4768352	protease,integrase	Ralstonia_phage(16.67%)	7	2035108:2035122	2046287:2046301
2035108:2035122	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001539594.1|2040239_2040617_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|2040778_2040976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934058.1|2041187_2043464_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_000520789.1|2043494_2043815_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|2044138_2044360_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125880.1|2044489_2046436_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
2046287:2046301	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201759.1|2046432_2047551_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 9
NC_016832	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete sequence	4768352	2660296	2747457	4768352	tRNA,tail,plate	Salmonella_phage(40.0%)	67	NA	NA
WP_000118732.1|2660296_2661640_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001007105.1|2661643_2662180_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000312802.1|2662246_2662732_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_001171575.1|2662968_2663394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001147174.1|2663365_2663767_-	BPSL0067 family protein	NA	NA	NA	NA	NA
WP_000996818.1|2665351_2665894_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000175184.1|2665957_2666248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000449770.1|2666333_2668997_-	type VI secretion system ATPase TssH	NA	A0A2I7SAX5	Vibrio_phage	34.8	9.8e-77
WP_000806676.1|2669364_2670267_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
WP_000750542.1|2670253_2671078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000108006.1|2671074_2671569_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000371495.1|2671584_2673468_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000145233.1|2673464_2674460_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_001670675.1|2676054_2676786_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.9	6.4e-39
WP_000917872.1|2676849_2677317_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
WP_000801233.1|2677313_2678036_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001052766.1|2678070_2678826_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000644706.1|2678897_2680265_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
WP_000207227.1|2680320_2681091_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001230964.1|2681168_2681969_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_001127546.1|2682100_2683276_-	MFS transporter	NA	NA	NA	NA	NA
WP_000648539.1|2683380_2684295_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000154870.1|2684315_2685119_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.4	2.7e-38
WP_001235094.1|2691150_2693724_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
WP_000992642.1|2693853_2694585_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|2694581_2695562_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197667.1|2695693_2696431_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|2696702_2697041_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|2697144_2697192_+	pheA operon leader peptide PheL	NA	NA	NA	NA	NA
WP_000200079.1|2697291_2698452_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210976.1|2698412_2699321_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|2699378_2700500_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|2700509_2701580_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212373.1|2702019_2702538_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030993.1|2702530_2703751_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
WP_000065257.1|2703907_2704255_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469802.1|2704295_2705063_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|2705107_2705656_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|2705674_2705923_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|2706266_2707628_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|2707793_2708585_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|2708604_2709891_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001682111.1|2710011_2710569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|2710650_2711241_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|2711364_2712243_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880973.1|2712328_2713990_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|2714138_2714477_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|2714642_2714933_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|2714922_2715399_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|2715548_2716031_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_001237649.1|2716650_2727525_+	Ig-like domain repeat protein	NA	NA	NA	NA	NA
WP_000533850.1|2727588_2728998_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196137.1|2728994_2731151_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_010989217.1|2731182_2732346_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000151542.1|2732888_2733662_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_000380485.1|2733630_2733804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000972389.1|2734065_2734284_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_001011760.1|2734374_2735475_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|2735471_2735957_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282793.1|2735953_2739031_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000763311.1|2739023_2739143_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|2739157_2739460_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|2739514_2740030_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|2740039_2741212_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|2741354_2741921_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_001221113.1|2742604_2743720_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_001111827.1|2743800_2747457_+	salmochelin/enterobactin export ABC transporter IroC	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 10
NC_016832	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete sequence	4768352	3066233	3109936	4768352	protease,bacteriocin,tRNA,transposase	Bacillus_virus(33.33%)	46	NA	NA
WP_001204111.1|3066233_3066692_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000034386.1|3066881_3067961_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111274.1|3068062_3069226_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000218338.1|3069247_3070294_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000218564.1|3070667_3071093_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000124001.1|3071118_3071697_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000553254.1|3071697_3072405_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001775599.1|3072392_3073070_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000956919.1|3073063_3073720_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000502119.1|3073824_3074283_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000098658.1|3074471_3076463_-	transketolase	NA	NA	NA	NA	NA
WP_000701830.1|3076738_3077497_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000105550.1|3077597_3078518_-	agmatinase	NA	NA	NA	NA	NA
WP_001278580.1|3078745_3080722_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000729109.1|3080730_3080862_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_077905074.1|3080995_3081160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001803086.1|3081156_3081456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062140.1|3081511_3082666_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001113171.1|3083158_3084553_+	galactose/proton symporter	NA	NA	NA	NA	NA
WP_000856775.1|3084631_3085129_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286121.1|3085224_3085932_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001800534.1|3086008_3086740_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593242.1|3086759_3087707_+	glutathione synthase	NA	NA	NA	NA	NA
WP_001053167.1|3087922_3088486_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_001285491.1|3088485_3088902_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000098333.1|3088948_3089635_-	global regulatory protein	NA	NA	NA	NA	NA
WP_001055657.1|3089764_3090745_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997790.1|3090762_3091467_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001094848.1|3091485_3092052_+	YggT family protein	NA	NA	NA	NA	NA
WP_001277205.1|3092048_3092339_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174773.1|3092346_3092940_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001096530.1|3092932_3094069_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000252198.1|3094159_3095167_-	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_000394189.1|3095299_3096346_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000502119.1|3096664_3097123_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000984827.1|3097245_3097965_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107559.1|3098014_3098341_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786887.1|3098340_3099060_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001148958.1|3099214_3100267_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091706.1|3100294_3100570_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_000976287.1|3100682_3101768_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_001049802.1|3101984_3103241_+	nucleoside permease	NA	NA	NA	NA	NA
WP_000234466.1|3105851_3106559_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001141622.1|3108834_3109152_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_000768134.1|3109148_3109415_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000421096.1|3109657_3109936_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 11
NC_016832	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete sequence	4768352	3487254	3525312	4768352	capsid,tail,plate,portal,terminase,integrase,transposase,lysis,head	Salmonella_phage(76.74%)	50	3482218:3482232	3494384:3494398
3482218:3482232	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
WP_001012560.1|3487254_3488901_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
WP_192930503.1|3488903_3488954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001311244.1|3489040_3489139_-	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_000290950.1|3489764_3490817_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_000900883.1|3491005_3491197_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047327.1|3491212_3491782_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_001247706.1|3491907_3492129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|3492161_3492671_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956176.1|3492678_3492975_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000996717.1|3493092_3493434_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244218.1|3493501_3493735_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000752613.1|3493734_3493962_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_000104152.1|3493958_3494816_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
3494384:3494398	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
WP_000017503.1|3494812_3497227_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001580533.1|3497380_3497569_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000822803.1|3497636_3497936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|3498044_3498923_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_001146827.1|3499536_3500451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185757.1|3500447_3501188_+	HIRAN domain-containing protein	NA	NA	NA	NA	NA
WP_000518064.1|3501222_3502260_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_001098422.1|3502259_3504026_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000216244.1|3504168_3505002_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_000742518.1|3505018_3506077_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000059191.1|3506080_3506731_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000673504.1|3506826_3507291_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000868175.1|3507290_3507494_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000171568.1|3507497_3507713_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001069905.1|3507693_3508206_+	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000727853.1|3508207_3508585_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001080928.1|3508581_3509010_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_001039939.1|3509105_3509537_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_000829146.1|3509529_3509976_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_000993754.1|3510044_3510623_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000177595.1|3510619_3510979_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000268271.1|3510965_3511874_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_001086816.1|3511866_3512472_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104804.1|3512468_3513983_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
WP_000805568.1|3513982_3514576_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
WP_001174915.1|3514547_3514988_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
WP_072075000.1|3514990_3515389_-|tail	phage tail protein	tail	A0A0F7LBW5	Escherichia_phage	37.5	1.3e-12
WP_000905046.1|3515416_3515983_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|3516125_3517298_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|3517307_3517823_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|3517877_3518180_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|3518194_3518314_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282793.1|3518306_3521384_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000980381.1|3521380_3521866_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|3521862_3522963_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972391.1|3523053_3523272_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_000502114.1|3524853_3525312_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NC_016832	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete sequence	4768352	4407212	4500871	4768352	tail,plate,capsid,terminase,portal,integrase,lysis,head	Salmonella_phage(81.25%)	104	4408385:4408401	4506101:4506117
WP_000089603.1|4407212_4408364_+|integrase	site-specific integrase	integrase	B5WZU7	Pseudomonas_phage	44.8	6.3e-49
4408385:4408401	attL	GTCATTTACGTGATTTA	NA	NA	NA	NA
WP_000455463.1|4408460_4408928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000994659.1|4409139_4410015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001149494.1|4410202_4410565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000214158.1|4410521_4411436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001768408.1|4411454_4412195_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000013624.1|4412173_4412860_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_000253629.1|4412895_4413396_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000626967.1|4413405_4413975_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000071290.1|4413994_4416085_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_010989289.1|4416081_4416840_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000252871.1|4417076_4417331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001251281.1|4417330_4417570_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000949576.1|4417599_4417962_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000848326.1|4417971_4418346_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA	NA
WP_000086082.1|4418342_4418996_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001240640.1|4418995_4419895_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001165842.1|4419884_4421363_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000244536.1|4421349_4421799_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA	NA
WP_000054770.1|4424788_4425175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821941.1|4425329_4425722_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000838927.1|4425718_4426687_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989292.1|4426701_4428132_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000213770.1|4428464_4429970_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_000993574.1|4430005_4430395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000623988.1|4430618_4430861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001283066.1|4431265_4432513_+	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	33.1	6.0e-61
WP_000502502.1|4432497_4433139_+	ParB N-terminal domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	1.1e-55
WP_010989295.1|4433349_4433892_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_000907593.1|4435157_4436078_+|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_001020123.1|4436801_4437104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|4437199_4437580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|4437950_4438160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|4438177_4438630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|4438626_4438923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000115421.1|4439000_4439459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|4439547_4441497_+	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000881183.1|4441568_4442477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022216.1|4442550_4443450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|4443524_4443851_+	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_001222413.1|4443950_4444220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|4444351_4445626_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001039750.1|4445845_4446223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001775272.1|4446309_4446528_-	ogr/Delta-like zinc finger family protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001011750.1|4446595_4447696_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_000980405.1|4447692_4448178_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_001282813.1|4448177_4450958_-|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
WP_000763315.1|4450950_4451070_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_001280965.1|4451084_4451387_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_001207653.1|4451441_4451957_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_000046101.1|4451966_4453139_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_000388790.1|4453241_4453460_-	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000161708.1|4453673_4454396_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000006337.1|4454593_4455001_-|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000104806.1|4455007_4456627_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_001086816.1|4456623_4457229_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268327.1|4457221_4458130_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_000177408.1|4458116_4458476_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000993749.1|4458472_4459051_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000343944.1|4459119_4459566_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_001039966.1|4459558_4459990_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
WP_024131238.1|4460085_4460514_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_000731034.1|4460510_4460888_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_001097942.1|4460892_4461402_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000171566.1|4461382_4461598_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_000868184.1|4461601_4461805_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673540.1|4461804_4462269_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000059175.1|4462362_4463013_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000730751.1|4463016_4464081_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000216272.1|4464097_4464931_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_001098453.1|4465073_4466840_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_001681813.1|4466839_4467883_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_000080839.1|4467931_4468627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|4468646_4469711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|4469707_4470772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000835188.1|4470781_4471000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217561.1|4471095_4471329_-	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_001154438.1|4471340_4471529_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_000104130.1|4474082_4474943_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001090717.1|4474939_4475524_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000785510.1|4475520_4475748_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001244240.1|4475747_4475981_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000963479.1|4476048_4476390_-	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_000956167.1|4476353_4476554_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000460852.1|4476561_4477071_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000102106.1|4477103_4477346_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000052560.1|4477462_4478095_+	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000027757.1|4478098_4479124_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_001681810.1|4480230_4480488_+	YjhX family toxin	NA	NA	NA	NA	NA
WP_001681808.1|4480498_4481389_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_000354257.1|4481388_4482135_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000052242.1|4482436_4484407_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000431675.1|4484426_4485731_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000467404.1|4485753_4486449_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_001023498.1|4486474_4487269_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000720235.1|4487278_4488346_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_000632616.1|4488390_4490127_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_010989299.1|4490126_4492622_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000127915.1|4492645_4493692_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_000466893.1|4493694_4494972_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_001210944.1|4495216_4495756_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_001120833.1|4496609_4498121_+	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_000488995.1|4498104_4499694_+	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|4499857_4500871_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
4506101:4506117	attR	TAAATCACGTAAATGAC	NA	NA	NA	NA
