assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000252975.1_ASM25297v1	NC_016011	Listeria ivanovii subsp. ivanovii PAM 55, complete genome	1	451361-451647	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	Unclear	GTTTTAATTACTTATTGTGAAATGTAAAT,GTTTTAATTACTTATTGTGAAATGTAAAT,GTTTTAATTACTTATTNTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	3,4,4	4	Unclear	csa3,DinG,cas3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	NA|133aa|up_5|NC_016011.1_446335_446734_+,NA|128aa|down_7|NC_016011.1_457805_458189_+,NA|480aa|down_9|NC_016011.1_459095_460535_+	NA|217aa|up_9|NC_016011.1_442398_443049_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NC_016011.1_443156_445217_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NC_016011.1_445220_445823_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NC_016011.1_445850_446318_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NC_016011.1_446335_446734_+	NA	NA|214aa|up_4|NC_016011.1_446744_447386_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NC_016011.1_447390_448437_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NC_016011.1_448453_448747_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NC_016011.1_448761_450033_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NC_016011.1_450170_451106_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|196aa|down_0|NC_016011.1_451725_452313_+	cd03577, NTR_TIMP_like, NTR domain, TIMP-like subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling	NA|227aa|down_1|NC_016011.1_452383_453064_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NC_016011.1_453082_453442_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NC_016011.1_453448_453907_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|604aa|down_4|NC_016011.1_454277_456089_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NC_016011.1_456179_456611_+	pfam00582, Usp, Universal stress protein family	NA|271aa|down_6|NC_016011.1_456645_457458_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|down_7|NC_016011.1_457805_458189_+	NA	NA|270aa|down_8|NC_016011.1_458289_459099_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|480aa|down_9|NC_016011.1_459095_460535_+	NA
GCF_000252975.1_ASM25297v1	NC_016011	Listeria ivanovii subsp. ivanovii PAM 55, complete genome	2	469832-470314	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	Unclear	GTTTTAATTACTTATTATGAAATGTAAAT,GTTTTAATTACTTATTATGAAATGTAAAT,GTTTTAATTACTTATTATGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	7,7,7	7	Unclear	csa3,DinG,cas3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	NA|480aa|up_9|NC_016011.1_459095_460535_+,NA	NA|480aa|up_9|NC_016011.1_459095_460535_+	NA	NA|214aa|up_8|NC_016011.1_460556_461198_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	cas6|241aa|up_7|NC_016011.1_461515_462238_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_6|NC_016011.1_462254_463943_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_5|NC_016011.1_463932_464802_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|263aa|up_4|NC_016011.1_464779_465568_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|737aa|up_3|NC_016011.1_465637_467848_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|163aa|up_2|NC_016011.1_467858_468347_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|341aa|up_1|NC_016011.1_468327_469350_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|93aa|up_0|NC_016011.1_469354_469633_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|415aa|down_0|NC_016011.1_470921_472166_+	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|297aa|down_1|NC_016011.1_472244_473135_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|279aa|down_2|NC_016011.1_473137_473974_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|810aa|down_3|NC_016011.1_473989_476419_+	cd10791, GH38N_AMII_like_1, N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38)	NA|289aa|down_4|NC_016011.1_476432_477299_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|454aa|down_5|NC_016011.1_477348_478710_+	pfam06824, Glyco_hydro_125, Metal-independent alpha-mannosidase (GH125)	NA|291aa|down_6|NC_016011.1_478808_479681_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|583aa|down_7|NC_016011.1_479802_481551_+	cd07010, cupin_PMI_type_I_N_bac, Phosphomannose isomerase in bacteria and archaea, N-terminal cupin domain	NA|126aa|down_8|NC_016011.1_481635_482013_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NC_016011.1_482157_483573_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_000252975.1_ASM25297v1	NC_016011	Listeria ivanovii subsp. ivanovii PAM 55, complete genome	3	740336-740736	3	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	Orphan	ACAACCAGCTAACGAATTTAGAT	23	0	0	NA	NA	NA	6	6	Orphan	csa3,DinG,cas3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	NA|167aa|up_9|NC_016011.1_730205_730706_+,NA|251aa|down_7|NC_016011.1_748604_749357_+	NA|167aa|up_9|NC_016011.1_730205_730706_+	NA	NA|186aa|up_8|NC_016011.1_730868_731426_+	PRK08118, PRK08118, DNA topology modulation protein	NA|280aa|up_7|NC_016011.1_731556_732396_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|227aa|up_6|NC_016011.1_732517_733198_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|204aa|up_5|NC_016011.1_733283_733895_+	pfam13577, SnoaL_4, SnoaL-like domain	NA|261aa|up_4|NC_016011.1_734014_734797_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|269aa|up_3|NC_016011.1_735899_736706_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|221aa|up_2|NC_016011.1_736654_737317_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|68aa|up_1|NC_016011.1_737483_737687_+	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|335aa|up_0|NC_016011.1_738521_739526_+	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively	NA|296aa|down_0|NC_016011.1_741786_742674_+	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|322aa|down_1|NC_016011.1_742673_743639_+	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|203aa|down_2|NC_016011.1_743638_744247_+	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|207aa|down_3|NC_016011.1_744255_744876_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|419aa|down_4|NC_016011.1_745202_746459_+	COG2262, HflX, GTPases [General function prediction only]	NA|291aa|down_5|NC_016011.1_746535_747408_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|330aa|down_6|NC_016011.1_747412_748402_+	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|251aa|down_7|NC_016011.1_748604_749357_+	NA	NA|217aa|down_8|NC_016011.1_749378_750029_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|330aa|down_9|NC_016011.1_750075_751065_-	cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases
GCF_000252975.1_ASM25297v1	NC_016011	Listeria ivanovii subsp. ivanovii PAM 55, complete genome	4	2715689-2715868	3	PILER-CR	no		csa3,DinG,cas3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	Orphan	TATTATTACTAAGGTCTA	18	0	0	NA	NA	NA	2	2	Orphan	csa3,DinG,cas3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	NA|237aa|up_9|NC_016011.1_2702861_2703572_-,NA|262aa|up_8|NC_016011.1_2703558_2704344_-,NA	NA|237aa|up_9|NC_016011.1_2702861_2703572_-	NA	NA|262aa|up_8|NC_016011.1_2703558_2704344_-	NA	NA|136aa|up_7|NC_016011.1_2704409_2704817_-	pfam10916, DUF2712, Protein of unknown function (DUF2712)	NA|396aa|up_6|NC_016011.1_2705010_2706198_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|696aa|up_5|NC_016011.1_2706307_2708395_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|up_4|NC_016011.1_2708460_2708931_-	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|138aa|up_3|NC_016011.1_2708961_2709375_-	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|466aa|up_2|NC_016011.1_2711061_2712459_-	PRK01096, PRK01096, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|160aa|up_1|NC_016011.1_2712473_2712953_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|524aa|up_0|NC_016011.1_2713000_2714572_+	pfam13306, LRR_5, Leucine rich repeats (6 copies)	NA|215aa|down_0|NC_016011.1_2716672_2717317_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|225aa|down_1|NC_016011.1_2719363_2720038_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|147aa|down_2|NC_016011.1_2720046_2720487_-	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|344aa|down_3|NC_016011.1_2720681_2721713_-	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|351aa|down_4|NC_016011.1_2721714_2722767_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|424aa|down_5|NC_016011.1_2722803_2724075_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|94aa|down_6|NC_016011.1_2724136_2724418_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|155aa|down_7|NC_016011.1_2724474_2724939_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|690aa|down_8|NC_016011.1_2724972_2727042_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|271aa|down_9|NC_016011.1_2727411_2728224_-	COG4905, COG4905, Predicted membrane protein [Function unknown]
GCF_000252975.1_ASM25297v1	NC_016011	Listeria ivanovii subsp. ivanovii PAM 55, complete genome	5	2798087-2798199	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	Orphan	AACGCGAGGATTTAATCCTTCGTGGAAGTTTCAAAA	36	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	NA,NA|74aa|down_2|NC_016011.1_2798947_2799169_-,NA|55aa|down_4|NC_016011.1_2801112_2801277_+,NA|158aa|down_5|NC_016011.1_2801427_2801901_+,NA|214aa|down_6|NC_016011.1_2801936_2802578_-	NA|106aa|up_9|NC_016011.1_2787542_2787860_-	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|470aa|up_8|NC_016011.1_2787852_2789262_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|246aa|up_7|NC_016011.1_2789258_2789996_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|451aa|up_6|NC_016011.1_2792284_2793637_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|99aa|up_5|NC_016011.1_2793662_2793959_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|240aa|up_4|NC_016011.1_2794114_2794834_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|81aa|up_3|NC_016011.1_2794934_2795177_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NC_016011.1_2795191_2795788_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NC_016011.1_2795896_2796214_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|578aa|up_0|NC_016011.1_2796243_2797977_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NC_016011.1_2798280_2798745_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|68aa|down_1|NC_016011.1_2798741_2798945_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NC_016011.1_2798947_2799169_-	NA	NA|455aa|down_3|NC_016011.1_2799302_2800667_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|55aa|down_4|NC_016011.1_2801112_2801277_+	NA	NA|158aa|down_5|NC_016011.1_2801427_2801901_+	NA	NA|214aa|down_6|NC_016011.1_2801936_2802578_-	NA	NA|505aa|down_7|NC_016011.1_2803283_2804798_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|314aa|down_8|NC_016011.1_2804910_2805852_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|312aa|down_9|NC_016011.1_2805895_2806831_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain
