assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000253135.1_ASM25313v1	NC_017343	Staphylococcus aureus subsp. aureus ECT-R 2, complete genome	1	392498-392599	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_8|NC_017343.1_384057_384267_-,NA|128aa|up_6|NC_017343.1_385091_385475_-,NA|33aa|up_0|NC_017343.1_391722_391821_+,NA|221aa|down_1|NC_017343.1_393689_394352_-,NA|179aa|down_7|NC_017343.1_400443_400980_-	NA|84aa|up_9|NC_017343.1_383767_384019_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NC_017343.1_384057_384267_-	NA	NA|194aa|up_7|NC_017343.1_384444_385026_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NC_017343.1_385091_385475_-	NA	NA|209aa|up_5|NC_017343.1_385744_386371_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NC_017343.1_386814_388338_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NC_017343.1_388353_388923_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NC_017343.1_389414_390170_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NC_017343.1_390249_391638_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NC_017343.1_391722_391821_+	NA	NA|319aa|down_0|NC_017343.1_392615_393572_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NC_017343.1_393689_394352_-	NA	NA|136aa|down_2|NC_017343.1_394494_394902_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_017343.1_395414_395993_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_017343.1_395992_397261_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_017343.1_397298_398765_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_017343.1_398789_400331_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NC_017343.1_400443_400980_-	NA	NA|235aa|down_8|NC_017343.1_401371_402076_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NC_017343.1_402474_402747_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000253135.1_ASM25313v1	NC_017343	Staphylococcus aureus subsp. aureus ECT-R 2, complete genome	2	783487-783565	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_7|NC_017343.1_774363_774468_+,NA|36aa|up_5|NC_017343.1_775900_776008_+,NA	NA|191aa|up_9|NC_017343.1_770804_771377_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_017343.1_771790_774322_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_017343.1_774363_774468_+	NA	NA|370aa|up_6|NC_017343.1_774636_775747_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_017343.1_775900_776008_+	NA	NA|280aa|up_4|NC_017343.1_776155_776995_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_017343.1_777168_777819_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_017343.1_777815_778052_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_017343.1_778320_780306_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_017343.1_780313_783160_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_017343.1_783823_784756_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_017343.1_784761_785601_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_017343.1_785608_786094_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_017343.1_786101_787541_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_017343.1_787607_788543_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_017343.1_789428_790340_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_017343.1_790336_791332_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_017343.1_791442_792387_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_017343.1_792950_793538_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_017343.1_793780_794683_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000253135.1_ASM25313v1	NC_017343	Staphylococcus aureus subsp. aureus ECT-R 2, complete genome	3	788942-789211	1	CRT	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	38	788978-788999|788978-788999|788978-788999|788978-788999|788978-788999|788978-788999|788978-788999|788978-788999|788978-788999|788978-788999|788978-788999|788978-788999|789036-789058|789036-789058|789036-789058|789036-789058|789036-789058|789036-789058|789036-789058|789095-789116|789095-789116|789095-789116|789095-789116|789095-789116|789095-789116|789095-789116|789095-789116|789095-789116|789095-789116|789095-789116|789095-789116|789153-789175|789153-789175|789153-789175|789153-789175|789153-789175|789153-789175|789153-789175	NC_017343.1_154407-154386|NC_017343.1_277483-277462|NC_017343.1_617094-617073|NC_017343.1_742831-742810|NC_017343.1_832287-832308|NC_017343.1_1307207-1307186|NC_017343.1_1573078-1573099|NC_017343.1_1587633-1587612|NC_017343.1_1897241-1897262|NC_017343.1_902519-902540|NC_017343.1_1607339-1607360|NC_017343.1_1607572-1607593|NC_017343.1_741581-741603|NC_017343.1_741859-741881|NC_017343.1_1307324-1307302|NC_017343.1_1897299-1897321|NC_017343.1_2238550-2238572|NC_017343.1_1395621-1395643|NC_017343.1_1999842-1999864|NC_017343.1_154407-154386|NC_017343.1_277483-277462|NC_017343.1_617094-617073|NC_017343.1_742831-742810|NC_017343.1_832287-832308|NC_017343.1_1307207-1307186|NC_017343.1_1573078-1573099|NC_017343.1_1587633-1587612|NC_017343.1_1897241-1897262|NC_017343.1_902519-902540|NC_017343.1_1607339-1607360|NC_017343.1_1607572-1607593|NC_017343.1_741581-741603|NC_017343.1_741859-741881|NC_017343.1_1307324-1307302|NC_017343.1_1897299-1897321|NC_017343.1_2238550-2238572|NC_017343.1_1395621-1395643|NC_017343.1_1999842-1999864	NA	4	4	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NC_017343.1_776155_776995_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NC_017343.1_777168_777819_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NC_017343.1_777815_778052_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NC_017343.1_778320_780306_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NC_017343.1_780313_783160_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NC_017343.1_783823_784756_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NC_017343.1_784761_785601_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NC_017343.1_785608_786094_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NC_017343.1_786101_787541_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NC_017343.1_787607_788543_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NC_017343.1_789428_790340_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NC_017343.1_790336_791332_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NC_017343.1_791442_792387_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NC_017343.1_792950_793538_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NC_017343.1_793780_794683_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NC_017343.1_795385_796015_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NC_017343.1_796827_797841_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NC_017343.1_797893_798904_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NC_017343.1_799042_800233_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NC_017343.1_800354_801116_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_000253135.1_ASM25313v1	NC_017343	Staphylococcus aureus subsp. aureus ECT-R 2, complete genome	4	832214-832295	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	832238-832271	NC_017343.1_1307315-1307282	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NC_017343.1_825316_825898_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NC_017343.1_825970_826588_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NC_017343.1_826742_827237_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NC_017343.1_827635_828058_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NC_017343.1_828205_828922_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NC_017343.1_829004_829544_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NC_017343.1_829694_830015_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NC_017343.1_830158_830515_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NC_017343.1_830672_831053_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NC_017343.1_831231_832110_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NC_017343.1_832906_833293_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_017343.1_833285_833582_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_017343.1_833831_834857_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_017343.1_834849_835545_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_017343.1_835562_836384_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NC_017343.1_836737_836932_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NC_017343.1_837165_838017_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NC_017343.1_838344_839106_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NC_017343.1_839203_840511_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NC_017343.1_840616_841867_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000253135.1_ASM25313v1	NC_017343	Staphylococcus aureus subsp. aureus ECT-R 2, complete genome	5	1573002-1573086	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1573028-1573060	NC_017343.1_1307315-1307283	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|228aa|up_9|NC_017343.1_1562211_1562895_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_017343.1_1563138_1563315_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_017343.1_1563607_1564954_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_017343.1_1564960_1565713_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_017343.1_1565714_1566653_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_017343.1_1566656_1567796_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_017343.1_1567931_1569764_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_017343.1_1569832_1570459_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_017343.1_1570490_1571468_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_017343.1_1571568_1572693_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_017343.1_1573258_1575082_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_017343.1_1575427_1575679_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_017343.1_1575723_1576698_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_017343.1_1576754_1578956_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_017343.1_1578960_1579422_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_017343.1_1579513_1580200_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_017343.1_1580239_1580956_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_017343.1_1580958_1581312_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_017343.1_1581312_1581897_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_017343.1_1581886_1582456_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000253135.1_ASM25313v1	NC_017343	Staphylococcus aureus subsp. aureus ECT-R 2, complete genome	6	1607432-1607579	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTATGTTGGGGCCCCGTCCCCAACTTCCATTGCCTGT	37	1	3	1607539-1607560|1607539-1607560|1607539-1607560	NC_017343.1_1095748-1095727|NC_017343.1_1999730-1999751|NC_017343.1_1999847-1999868	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|49aa|down_3|NC_017343.1_1611569_1611716_-,NA|43aa|down_8|NC_017343.1_1614752_1614881_-	NA|208aa|up_9|NC_017343.1_1596101_1596725_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NC_017343.1_1596724_1597993_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NC_017343.1_1598004_1598928_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NC_017343.1_1598930_1599569_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NC_017343.1_1599853_1600162_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NC_017343.1_1600176_1600605_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NC_017343.1_1600608_1600869_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NC_017343.1_1600931_1603562_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NC_017343.1_1603904_1606382_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NC_017343.1_1606383_1607052_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NC_017343.1_1607746_1608865_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NC_017343.1_1608865_1610008_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NC_017343.1_1610319_1611333_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NC_017343.1_1611569_1611716_-	NA	NA|61aa|down_4|NC_017343.1_1611755_1611938_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NC_017343.1_1612037_1612460_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NC_017343.1_1612544_1613819_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NC_017343.1_1613979_1614753_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NC_017343.1_1614752_1614881_-	NA	NA|589aa|down_9|NC_017343.1_1615213_1616980_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_000253135.1_ASM25313v1	NC_017343	Staphylococcus aureus subsp. aureus ECT-R 2, complete genome	7	1999761-1999842	5	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	GGCCCCCACCCCAACTTACATTGT	24	1	5	1999785-1999818|1999785-1999818|1999785-1999818|1999785-1999818|1999785-1999818	NC_017343.1_783486-783519|NC_017343.1_1095582-1095549|NC_017343.1_1693084-1693051|NC_017343.1_1311656-1311689|NC_017343.1_2688829-2688862	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|114aa|up_7|NC_017343.1_1991505_1991847_+,NA|61aa|up_6|NC_017343.1_1992050_1992233_+,NA|81aa|up_4|NC_017343.1_1993326_1993569_+,NA	NA|238aa|up_9|NC_017343.1_1989838_1990552_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	DEDDh|311aa|up_8|NC_017343.1_1990567_1991500_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_7|NC_017343.1_1991505_1991847_+	NA	NA|61aa|up_6|NC_017343.1_1992050_1992233_+	NA	NA|328aa|up_5|NC_017343.1_1992332_1993316_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|81aa|up_4|NC_017343.1_1993326_1993569_+	NA	NA|346aa|up_3|NC_017343.1_1993631_1994669_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NC_017343.1_1995787_1996804_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NC_017343.1_1996825_1997881_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NC_017343.1_1998316_1999540_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NC_017343.1_1999983_2001291_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NC_017343.1_2001830_2003447_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NC_017343.1_2003522_2003807_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NC_017343.1_2003981_2004725_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NC_017343.1_2004749_2006009_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NC_017343.1_2006205_2006832_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NC_017343.1_2007192_2007978_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NC_017343.1_2008577_2008712_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NC_017343.1_2008947_2009511_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NC_017343.1_2009513_2009657_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_000253135.1_ASM25313v1	NC_017343	Staphylococcus aureus subsp. aureus ECT-R 2, complete genome	8	2129018-2129098	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NC_017343.1_2123892_2124123_-,NA|364aa|up_0|NC_017343.1_2127909_2129001_+,NA|35aa|down_0|NC_017343.1_2129433_2129538_-,NA|53aa|down_1|NC_017343.1_2130217_2130376_+	NA|237aa|up_9|NC_017343.1_2119503_2120214_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_017343.1_2120334_2120778_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_017343.1_2120977_2121391_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_017343.1_2121847_2123221_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_017343.1_2123892_2124123_-	NA	NA|313aa|up_4|NC_017343.1_2124153_2125092_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_017343.1_2125527_2126193_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_017343.1_2126344_2126665_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NC_017343.1_2126666_2127644_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_017343.1_2127909_2129001_+	NA	NA|35aa|down_0|NC_017343.1_2129433_2129538_-	NA	NA|53aa|down_1|NC_017343.1_2130217_2130376_+	NA	NA|286aa|down_2|NC_017343.1_2131033_2131891_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NC_017343.1_2131958_2132741_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NC_017343.1_2132972_2134778_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NC_017343.1_2135458_2136997_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NC_017343.1_2137031_2139164_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NC_017343.1_2139175_2139610_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NC_017343.1_2139609_2140716_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NC_017343.1_2141034_2148480_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_000253135.1_ASM25313v1	NC_017343	Staphylococcus aureus subsp. aureus ECT-R 2, complete genome	9	2141339-2141424	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|364aa|up_9|NC_017343.1_2127909_2129001_+,NA|35aa|up_8|NC_017343.1_2129433_2129538_-,NA|53aa|up_7|NC_017343.1_2130217_2130376_+,NA	NA|364aa|up_9|NC_017343.1_2127909_2129001_+	NA	NA|35aa|up_8|NC_017343.1_2129433_2129538_-	NA	NA|53aa|up_7|NC_017343.1_2130217_2130376_+	NA	NA|286aa|up_6|NC_017343.1_2131033_2131891_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_017343.1_2131958_2132741_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_017343.1_2132972_2134778_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_017343.1_2135458_2136997_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_017343.1_2137031_2139164_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_017343.1_2139175_2139610_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_017343.1_2139609_2140716_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_017343.1_2148757_2150113_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_017343.1_2150139_2151072_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_017343.1_2151073_2151883_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_017343.1_2152071_2152980_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_017343.1_2159220_2160285_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NC_017343.1_2160432_2161875_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NC_017343.1_2162197_2162671_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NC_017343.1_2162769_2164113_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NC_017343.1_2164289_2164973_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NC_017343.1_2164991_2166179_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_000253135.1_ASM25313v1	NC_017343	Staphylococcus aureus subsp. aureus ECT-R 2, complete genome	10	2249379-2249459	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	2249404-2249434|2249404-2249434|2249404-2249434|2249404-2249434|2249404-2249434|2249404-2249434|2249404-2249434|2249404-2249434|2249404-2249434|2249404-2249434|2249404-2249434|2249404-2249434|2249404-2249434|2249404-2249434|2249404-2249434	NC_017343.1_796230-796260|NC_017343.1_796286-796316|NC_017343.1_48999-49029|NC_017343.1_353790-353760|NC_017343.1_617158-617128|NC_017343.1_796342-796372|NC_017343.1_832550-832580|NC_017343.1_998516-998546|NC_017343.1_1101236-1101206|NC_017343.1_1307271-1307241|NC_017343.1_1395674-1395704|NC_017343.1_1587696-1587666|NC_017343.1_1895893-1895923|NC_017343.1_2238603-2238633|NC_017343.1_2414128-2414158	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NC_017343.1_2239912_2240077_+,NA|106aa|up_8|NC_017343.1_2240321_2240639_+,NA|84aa|up_5|NC_017343.1_2245760_2246012_+,NA|62aa|up_0|NC_017343.1_2249151_2249337_+,NA	NA|55aa|up_9|NC_017343.1_2239912_2240077_+	NA	NA|106aa|up_8|NC_017343.1_2240321_2240639_+	NA	NA|1056aa|up_7|NC_017343.1_2240822_2243990_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_017343.1_2244106_2245372_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_017343.1_2245760_2246012_+	NA	NA|255aa|up_4|NC_017343.1_2246003_2246768_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_017343.1_2246929_2247370_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_017343.1_2247362_2248574_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_017343.1_2248675_2249026_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NC_017343.1_2249151_2249337_+	NA	NA|341aa|down_0|NC_017343.1_2249602_2250625_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_017343.1_2250644_2251244_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_017343.1_2251250_2251484_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_017343.1_2251489_2251936_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_017343.1_2251949_2252435_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_017343.1_2252431_2253691_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_017343.1_2253753_2254248_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_017343.1_2254249_2254756_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_017343.1_2254786_2255791_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_017343.1_2255960_2256566_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
