assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	1	372179-372602	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGGCAACGGCGGCAACGGCGGG	24	1	1	372476-372496	NC_015848.1_135966-135986	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|161aa|down_2|NC_015848.1_384329_384812_-,NA|410aa|down_6|NC_015848.1_386928_388158_+	NA|98aa|up_9|NC_015848.1_362024_362318_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|up_8|NC_015848.1_362347_362638_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|up_7|NC_015848.1_362648_363536_+	pfam14011, ESX-1_EspG, EspG family	NA|473aa|up_6|NC_015848.1_363582_365001_+	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|462aa|up_5|NC_015848.1_364997_366383_+	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|332aa|up_4|NC_015848.1_366379_367375_+	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|401aa|up_3|NC_015848.1_367361_368564_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|262aa|up_2|NC_015848.1_368670_369456_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_1|NC_015848.1_369444_370248_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_0|NC_015848.1_370257_371655_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|3182aa|down_0|NC_015848.1_373922_383468_-	pfam00823, PPE, PPE family	NA|224aa|down_1|NC_015848.1_383670_384342_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_2|NC_015848.1_384329_384812_-	NA	NA|239aa|down_3|NC_015848.1_384869_385586_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_4|NC_015848.1_385687_386344_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_5|NC_015848.1_386413_386905_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_6|NC_015848.1_386928_388158_+	NA	NA|621aa|down_7|NC_015848.1_388312_390175_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_8|NC_015848.1_390246_390633_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_9|NC_015848.1_390635_391271_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	2	372671-372799	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGGCAACGGCGGCAACGGCGGG	24	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|161aa|down_2|NC_015848.1_384329_384812_-,NA|410aa|down_6|NC_015848.1_386928_388158_+	NA|98aa|up_9|NC_015848.1_362024_362318_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|up_8|NC_015848.1_362347_362638_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|up_7|NC_015848.1_362648_363536_+	pfam14011, ESX-1_EspG, EspG family	NA|473aa|up_6|NC_015848.1_363582_365001_+	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|462aa|up_5|NC_015848.1_364997_366383_+	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|332aa|up_4|NC_015848.1_366379_367375_+	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|401aa|up_3|NC_015848.1_367361_368564_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|262aa|up_2|NC_015848.1_368670_369456_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_1|NC_015848.1_369444_370248_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_0|NC_015848.1_370257_371655_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|3182aa|down_0|NC_015848.1_373922_383468_-	pfam00823, PPE, PPE family	NA|224aa|down_1|NC_015848.1_383670_384342_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_2|NC_015848.1_384329_384812_-	NA	NA|239aa|down_3|NC_015848.1_384869_385586_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_4|NC_015848.1_385687_386344_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_5|NC_015848.1_386413_386905_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_6|NC_015848.1_386928_388158_+	NA	NA|621aa|down_7|NC_015848.1_388312_390175_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_8|NC_015848.1_390246_390633_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_9|NC_015848.1_390635_391271_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	3	590859-590976	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GATGACCTGCGCCGACGACGATGCAGAGCGTAGCGATGAGG	41	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|110aa|down_2|NC_015848.1_593555_593885_-,NA|317aa|down_3|NC_015848.1_593881_594832_-,NA|265aa|down_5|NC_015848.1_595604_596399_-,NA|311aa|down_7|NC_015848.1_597557_598490_+	NA|281aa|up_9|NC_015848.1_579247_580090_-	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|175aa|up_8|NC_015848.1_580327_580852_-	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|370aa|up_7|NC_015848.1_580878_581988_+	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|452aa|up_6|NC_015848.1_582049_583405_+	pfam17964, Big_10, Bacterial Ig domain	NA|252aa|up_5|NC_015848.1_583385_584141_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|439aa|up_4|NC_015848.1_584323_585640_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|481aa|up_3|NC_015848.1_585687_587130_+	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase	NA|184aa|up_2|NC_015848.1_587126_587678_+	pfam10722, YbjN, Putative bacterial sensory transduction regulator	NA|213aa|up_1|NC_015848.1_587912_588551_+	TIGR00948, Hypothetical_protein_Rv0488/MT0507/Mb0498	NA|250aa|up_0|NC_015848.1_588707_589457_+	PRK14120, gpmA, phosphoglyceromutase; Provisional	NA|228aa|down_0|NC_015848.1_590989_591673_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|630aa|down_1|NC_015848.1_591669_593559_-	pfam00732, GMC_oxred_N, GMC oxidoreductase	NA|110aa|down_2|NC_015848.1_593555_593885_-	NA	NA|317aa|down_3|NC_015848.1_593881_594832_-	NA	NA|239aa|down_4|NC_015848.1_594887_595604_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|265aa|down_5|NC_015848.1_595604_596399_-	NA	NA|345aa|down_6|NC_015848.1_596526_597561_+	pfam02541, Ppx-GppA, Ppx/GppA phosphatase family	NA|311aa|down_7|NC_015848.1_597557_598490_+	NA	NA|281aa|down_8|NC_015848.1_598505_599348_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|292aa|down_9|NC_015848.1_599363_600239_+	pfam13622, 4HBT_3, Thioesterase-like superfamily
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	4	623437-624083	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGCCGGCGGGGCCGGCGG	23	2	3	623814-623835|623859-623880|623859-623880	NC_015848.1_1261093-1261114|NC_015848.1_848692-848713|NC_015848.1_1203807-1203786	NA	14	14	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|183aa|up_6|NC_015848.1_616356_616905_+,NA|100aa|up_5|NC_015848.1_616901_617201_+,NA|54aa|down_9|NC_015848.1_635501_635663_-	NA|310aa|up_9|NC_015848.1_612618_613548_+	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|563aa|up_8|NC_015848.1_613580_615269_+	COG0007, CysG, Uroporphyrinogen-III methylase [Coenzyme metabolism]	NA|330aa|up_7|NC_015848.1_615354_616344_+	PRK09283, PRK09283, porphobilinogen synthase	NA|183aa|up_6|NC_015848.1_616356_616905_+	NA	NA|100aa|up_5|NC_015848.1_616901_617201_+	NA	NA|512aa|up_4|NC_015848.1_617279_618815_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|159aa|up_3|NC_015848.1_618811_619288_-	pfam01740, STAS, STAS domain	NA|411aa|up_2|NC_015848.1_619612_620845_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|232aa|up_1|NC_015848.1_620976_621672_+	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases	NA|286aa|up_0|NC_015848.1_621960_622818_-	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]	NA|452aa|down_0|NC_015848.1_626367_627723_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|132aa|down_1|NC_015848.1_627706_628102_-	TIGR00026, Hypothetical_protein_Rv1261c/MT1299/Mb1292c	NA|463aa|down_2|NC_015848.1_628215_629604_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|203aa|down_3|NC_015848.1_629603_630212_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|204aa|down_4|NC_015848.1_630265_630877_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|260aa|down_5|NC_015848.1_630873_631653_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|530aa|down_6|NC_015848.1_631685_633275_+	COG1333, ResB, ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]	NA|325aa|down_7|NC_015848.1_633271_634246_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|down_8|NC_015848.1_634287_635505_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|down_9|NC_015848.1_635501_635663_-	NA
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	5	850758-850964	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACGGCGGNGCCGGCGG	18	1	5	850845-850865|850845-850865|850845-850865|850845-850865|850845-850865	NC_015848.1_340923-340903|NC_015848.1_2751818-2751838|NC_015848.1_3113542-3113562|NC_015848.1_1596716-1596696|NC_015848.1_2032689-2032669	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|82aa|up_3|NC_015848.1_847245_847491_+,NA|186aa|up_1|NC_015848.1_849073_849631_-,NA|82aa|down_2|NC_015848.1_852715_852961_+,NA|242aa|down_8|NC_015848.1_861096_861822_-	NA|178aa|up_9|NC_015848.1_842734_843268_+	PRK09645, PRK09645, ECF RNA polymerase sigma factor SigL	NA|251aa|up_8|NC_015848.1_843331_844084_+	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]	NA|47aa|up_7|NC_015848.1_844197_844338_+	CHL00099, ilvB, acetohydroxyacid synthase large subunit	NA|166aa|up_6|NC_015848.1_844386_844884_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|183aa|up_5|NC_015848.1_845247_845796_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|283aa|up_4|NC_015848.1_846000_846849_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|82aa|up_3|NC_015848.1_847245_847491_+	NA	NA|176aa|up_2|NC_015848.1_848168_848696_+	pfam00934, PE, PE family	NA|186aa|up_1|NC_015848.1_849073_849631_-	NA	NA|169aa|up_0|NC_015848.1_849627_850134_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|86aa|down_0|NC_015848.1_851628_851886_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_1|NC_015848.1_851909_852338_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|82aa|down_2|NC_015848.1_852715_852961_+	NA	NA|295aa|down_3|NC_015848.1_853029_853914_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|391aa|down_4|NC_015848.1_853924_855097_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|511aa|down_5|NC_015848.1_855103_856636_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|585aa|down_6|NC_015848.1_856841_858596_+	pfam00934, PE, PE family	NA|647aa|down_7|NC_015848.1_858785_860726_-	pfam00823, PPE, PPE family	NA|242aa|down_8|NC_015848.1_861096_861822_-	NA	NA|248aa|down_9|NC_015848.1_861963_862707_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	6	934333-935364	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	2	935200-935235|935200-935235	NC_015848.1_1230619-1230654|NC_015848.1_2477839-2477804	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NC_015848.1_939375_939927_-	NA|214aa|up_9|NC_015848.1_921269_921911_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|685aa|up_8|NC_015848.1_921968_924023_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_7|NC_015848.1_924188_925358_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_6|NC_015848.1_925445_926462_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_5|NC_015848.1_926623_927265_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_4|NC_015848.1_927345_928401_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_3|NC_015848.1_928452_928845_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_2|NC_015848.1_928902_929325_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|302aa|up_1|NC_015848.1_929681_930587_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NC_015848.1_930605_931421_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|882aa|down_0|NC_015848.1_935637_938283_-	pfam00934, PE, PE family	NA|215aa|down_1|NC_015848.1_938750_939395_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NC_015848.1_939375_939927_-	NA	NA|241aa|down_3|NC_015848.1_940007_940730_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NC_015848.1_940800_941829_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NC_015848.1_942518_943289_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NC_015848.1_943375_944188_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NC_015848.1_944255_945116_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|431aa|down_8|NC_015848.1_945909_947202_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NC_015848.1_947185_948190_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	7	2033052-2033187	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GAGCCGCCCGCCCCGCCGGAGCCGCCGGAGCCG	33	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|186aa|up_9|NC_015848.1_2011585_2012143_-,NA|56aa|down_4|NC_015848.1_2039005_2039173_-,NA|156aa|down_5|NC_015848.1_2039312_2039780_-,NA|88aa|down_7|NC_015848.1_2041737_2042001_+	NA|186aa|up_9|NC_015848.1_2011585_2012143_-	NA	NA|533aa|up_8|NC_015848.1_2012225_2013824_-	PRK13388, PRK13388, acyl-CoA synthetase; Provisional	NA|413aa|up_7|NC_015848.1_2014021_2015260_+	PRK06185, PRK06185, FAD-dependent oxidoreductase	NA|1309aa|up_6|NC_015848.1_2015870_2019797_-	pfam00823, PPE, PPE family	NA|566aa|up_5|NC_015848.1_2020000_2021698_-	pfam13810, DUF4185, Domain of unknown function (DUF4185)	NA|421aa|up_4|NC_015848.1_2022155_2023417_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|382aa|up_3|NC_015848.1_2024912_2026058_-	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|368aa|up_2|NC_015848.1_2026283_2027387_+	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain	NA|946aa|up_1|NC_015848.1_2027587_2030425_+	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein	NA|219aa|up_0|NC_015848.1_2030745_2031402_+	pfam01083, Cutinase, Cutinase	NA|469aa|down_0|NC_015848.1_2035049_2036456_+	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|128aa|down_1|NC_015848.1_2036465_2036849_-	pfam16817, DUF5073, Domain of unknown function (DUF5073)	NA|259aa|down_2|NC_015848.1_2037779_2038556_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|98aa|down_3|NC_015848.1_2038699_2038993_-	pfam01527, HTH_Tnp_1, Transposase	NA|56aa|down_4|NC_015848.1_2039005_2039173_-	NA	NA|156aa|down_5|NC_015848.1_2039312_2039780_-	NA	NA|419aa|down_6|NC_015848.1_2040190_2041447_-	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|88aa|down_7|NC_015848.1_2041737_2042001_+	NA	NA|72aa|down_8|NC_015848.1_2042072_2042288_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|90aa|down_9|NC_015848.1_2042667_2042937_+	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	8	2033698-2034006	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGGCCCCGCCGNNNCCG	18	0	0	NA	NA	NA	6	6	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|186aa|up_9|NC_015848.1_2011585_2012143_-,NA|56aa|down_4|NC_015848.1_2039005_2039173_-,NA|156aa|down_5|NC_015848.1_2039312_2039780_-,NA|88aa|down_7|NC_015848.1_2041737_2042001_+	NA|186aa|up_9|NC_015848.1_2011585_2012143_-	NA	NA|533aa|up_8|NC_015848.1_2012225_2013824_-	PRK13388, PRK13388, acyl-CoA synthetase; Provisional	NA|413aa|up_7|NC_015848.1_2014021_2015260_+	PRK06185, PRK06185, FAD-dependent oxidoreductase	NA|1309aa|up_6|NC_015848.1_2015870_2019797_-	pfam00823, PPE, PPE family	NA|566aa|up_5|NC_015848.1_2020000_2021698_-	pfam13810, DUF4185, Domain of unknown function (DUF4185)	NA|421aa|up_4|NC_015848.1_2022155_2023417_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|382aa|up_3|NC_015848.1_2024912_2026058_-	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|368aa|up_2|NC_015848.1_2026283_2027387_+	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain	NA|946aa|up_1|NC_015848.1_2027587_2030425_+	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein	NA|219aa|up_0|NC_015848.1_2030745_2031402_+	pfam01083, Cutinase, Cutinase	NA|469aa|down_0|NC_015848.1_2035049_2036456_+	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|128aa|down_1|NC_015848.1_2036465_2036849_-	pfam16817, DUF5073, Domain of unknown function (DUF5073)	NA|259aa|down_2|NC_015848.1_2037779_2038556_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|98aa|down_3|NC_015848.1_2038699_2038993_-	pfam01527, HTH_Tnp_1, Transposase	NA|56aa|down_4|NC_015848.1_2039005_2039173_-	NA	NA|156aa|down_5|NC_015848.1_2039312_2039780_-	NA	NA|419aa|down_6|NC_015848.1_2040190_2041447_-	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|88aa|down_7|NC_015848.1_2041737_2042001_+	NA	NA|72aa|down_8|NC_015848.1_2042072_2042288_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|90aa|down_9|NC_015848.1_2042667_2042937_+	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	9	2126868-2127062	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGTCGCCGCCGTTGCC	21	2	3	2126889-2126906|2126889-2126906|2126979-2126996	NC_015848.1_408838-408821|NC_015848.1_618191-618174|NC_015848.1_3512839-3512822	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NC_015848.1_2126167_2126431_-,NA	NA|165aa|up_9|NC_015848.1_2112327_2112822_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|211aa|up_8|NC_015848.1_2113326_2113959_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NC_015848.1_2114317_2117143_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NC_015848.1_2117363_2118224_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NC_015848.1_2118264_2119131_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NC_015848.1_2119135_2121022_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NC_015848.1_2121037_2123071_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|732aa|up_2|NC_015848.1_2123304_2125500_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NC_015848.1_2125775_2126171_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NC_015848.1_2126167_2126431_-	NA	NA|350aa|down_0|NC_015848.1_2128171_2129221_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NC_015848.1_2129220_2130588_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NC_015848.1_2130761_2132201_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NC_015848.1_2132234_2133686_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NC_015848.1_2133715_2134666_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NC_015848.1_2134680_2135097_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NC_015848.1_2135374_2135797_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NC_015848.1_2135845_2136148_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NC_015848.1_2136144_2136459_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NC_015848.1_2136458_2138192_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	10	2212829-2213048	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NC_015848.1_2198673_2199081_-,NA|127aa|down_5|NC_015848.1_2220564_2220945_-	NA|741aa|up_9|NC_015848.1_2192641_2194864_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NC_015848.1_2194901_2195345_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NC_015848.1_2195458_2196052_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NC_015848.1_2196134_2196740_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NC_015848.1_2196839_2197844_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NC_015848.1_2197943_2198696_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NC_015848.1_2198673_2199081_-	NA	NA|767aa|up_2|NC_015848.1_2199215_2201516_+	PLN02892, PLN02892, isocitrate lyase	NA|419aa|up_1|NC_015848.1_2202821_2204078_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|2223aa|up_0|NC_015848.1_2204656_2211325_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NC_015848.1_2215074_2215539_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NC_015848.1_2215636_2216500_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NC_015848.1_2216537_2217809_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NC_015848.1_2218081_2219197_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NC_015848.1_2219187_2220528_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NC_015848.1_2220564_2220945_-	NA	NA|621aa|down_6|NC_015848.1_2221101_2222964_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NC_015848.1_2222971_2223451_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NC_015848.1_2223681_2224455_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NC_015848.1_2224458_2225226_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	11	3181323-3183563	5,2,6,3	CRT,PILER-CR,CRISPRCasFinder,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-D,Type III-A,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A	30,27,29,27	30	TypeIII-C,TypeIII-D,TypeIII-A,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|64aa|up_8|NC_015848.1_3172955_3173147_+,NA|121aa|up_4|NC_015848.1_3175189_3175552_+,NA|86aa|up_2|NC_015848.1_3177437_3177695_+,NA|104aa|up_1|NC_015848.1_3177799_3178111_+,NA	NA|168aa|up_9|NC_015848.1_3171983_3172487_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|64aa|up_8|NC_015848.1_3172955_3173147_+	NA	NA|80aa|up_7|NC_015848.1_3173410_3173650_-	COG3903, COG3903, Predicted ATPase [General function prediction only]	NA|87aa|up_6|NC_015848.1_3173665_3173926_-	COG3903, COG3903, Predicted ATPase [General function prediction only]	NA|114aa|up_5|NC_015848.1_3174519_3174861_+	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|121aa|up_4|NC_015848.1_3175189_3175552_+	NA	NA|578aa|up_3|NC_015848.1_3175707_3177441_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|86aa|up_2|NC_015848.1_3177437_3177695_+	NA	NA|104aa|up_1|NC_015848.1_3177799_3178111_+	NA	NA|419aa|up_0|NC_015848.1_3179508_3180765_-	pfam01548, DEDD_Tnp_IS110, Transposase	cas2|114aa|down_0|NC_015848.1_3183611_3183953_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NC_015848.1_3183953_3184970_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|416aa|down_2|NC_015848.1_3184982_3186230_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NC_015848.1_3186226_3187354_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NC_015848.1_3187350_3188259_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NC_015848.1_3188239_3188950_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|131aa|down_6|NC_015848.1_3188946_3189339_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|814aa|down_7|NC_015848.1_3189335_3191777_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|263aa|down_8|NC_015848.1_3191773_3192562_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|420aa|down_9|NC_015848.1_3192712_3193972_+	pfam00665, rve, Integrase core domain
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	12	3808500-3809076	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGTTGCCGCCGNNGCCGCCG	25	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_3|NC_015848.1_3825038_3825326_-	NA|282aa|up_9|NC_015848.1_3787635_3788481_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NC_015848.1_3788955_3789396_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NC_015848.1_3789429_3790299_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NC_015848.1_3790319_3791330_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|274aa|up_5|NC_015848.1_3791426_3792248_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|410aa|up_4|NC_015848.1_3792314_3793544_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NC_015848.1_3793826_3795176_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NC_015848.1_3795187_3796327_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NC_015848.1_3796323_3797055_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2539aa|up_0|NC_015848.1_3797063_3804680_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NC_015848.1_3811179_3811437_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3736aa|down_1|NC_015848.1_3811689_3822897_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NC_015848.1_3823521_3823968_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|96aa|down_3|NC_015848.1_3825038_3825326_-	NA	NA|3720aa|down_4|NC_015848.1_3825662_3836822_-	pfam00823, PPE, PPE family	NA|130aa|down_5|NC_015848.1_3838821_3839211_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_6|NC_015848.1_3839224_3839518_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_7|NC_015848.1_3839514_3840360_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_8|NC_015848.1_3840483_3840759_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_9|NC_015848.1_3840755_3841013_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	13	3809771-3810315	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCCGCCGGCCCCGCCGTTGCCG	23	3	93	3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809794-3809815|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3809953-3809971|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229|3810208-3810229	NC_015848.1_1204054-1204075|NC_015848.1_1405856-1405877|NC_015848.1_1641707-1641728|NC_015848.1_1656699-1656720|NC_015848.1_1661105-1661126|NC_015848.1_2870900-2870921|NC_015848.1_154596-154575|NC_015848.1_373062-373041|NC_015848.1_637594-637573|NC_015848.1_1101998-1101977|NC_015848.1_1230558-1230537|NC_015848.1_2752660-2752639|NC_015848.1_4001564-4001543|NC_015848.1_4002128-4002107|NC_015848.1_4002266-4002245|NC_015848.1_4002839-4002818|NC_015848.1_848602-848584|NC_015848.1_848659-848641|NC_015848.1_2751922-2751904|NC_015848.1_2873648-2873666|NC_015848.1_4162515-4162497|NC_015848.1_4163022-4163004|NC_015848.1_154167-154149|NC_015848.1_341974-341992|NC_015848.1_636745-636727|NC_015848.1_1106664-1106682|NC_015848.1_1204075-1204093|NC_015848.1_1205475-1205493|NC_015848.1_1206711-1206729|NC_015848.1_1228842-1228824|NC_015848.1_1230519-1230501|NC_015848.1_1235530-1235512|NC_015848.1_1641869-1641887|NC_015848.1_1642007-1642025|NC_015848.1_1642241-1642259|NC_015848.1_1680318-1680336|NC_015848.1_1891615-1891633|NC_015848.1_2045172-2045154|NC_015848.1_2442581-2442563|NC_015848.1_3014223-3014241|NC_015848.1_3848700-3848682|NC_015848.1_3985579-3985561|NC_015848.1_3989490-3989472|NC_015848.1_4090295-4090313|NC_015848.1_4163217-4163199|NC_015848.1_1660997-1661018|NC_015848.1_2477738-2477759|NC_015848.1_153621-153600|NC_015848.1_341398-341419|NC_015848.1_341419-341398|NC_015848.1_341485-341506|NC_015848.1_341506-341485|NC_015848.1_341584-341605|NC_015848.1_343146-343167|NC_015848.1_344757-344778|NC_015848.1_344778-344757|NC_015848.1_347063-347084|NC_015848.1_347084-347063|NC_015848.1_347561-347582|NC_015848.1_347582-347561|NC_015848.1_624182-624161|NC_015848.1_937268-937289|NC_015848.1_1204153-1204174|NC_015848.1_1204174-1204153|NC_015848.1_1206789-1206810|NC_015848.1_1206810-1206789|NC_015848.1_1228902-1228881|NC_015848.1_1596453-1596474|NC_015848.1_1642169-1642190|NC_015848.1_1660748-1660769|NC_015848.1_1660784-1660805|NC_015848.1_2032327-2032348|NC_015848.1_2441284-2441305|NC_015848.1_2477759-2477738|NC_015848.1_2863102-2863123|NC_015848.1_2863123-2863102|NC_015848.1_3031539-3031560|NC_015848.1_3114429-3114450|NC_015848.1_3114450-3114429|NC_015848.1_3808264-3808285|NC_015848.1_3989592-3989613|NC_015848.1_3989613-3989592|NC_015848.1_3991371-3991392|NC_015848.1_3993165-3993186|NC_015848.1_3993186-3993165|NC_015848.1_3993762-3993783|NC_015848.1_3993783-3993762|NC_015848.1_3994209-3994188|NC_015848.1_4163184-4163163|NC_015848.1_4163217-4163238|NC_015848.1_4163238-4163217|NC_015848.1_4164117-4164138|NC_015848.1_4164138-4164117	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_3|NC_015848.1_3825038_3825326_-	NA|282aa|up_9|NC_015848.1_3787635_3788481_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NC_015848.1_3788955_3789396_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NC_015848.1_3789429_3790299_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NC_015848.1_3790319_3791330_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|274aa|up_5|NC_015848.1_3791426_3792248_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|410aa|up_4|NC_015848.1_3792314_3793544_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NC_015848.1_3793826_3795176_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NC_015848.1_3795187_3796327_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NC_015848.1_3796323_3797055_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2539aa|up_0|NC_015848.1_3797063_3804680_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NC_015848.1_3811179_3811437_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3736aa|down_1|NC_015848.1_3811689_3822897_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NC_015848.1_3823521_3823968_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|96aa|down_3|NC_015848.1_3825038_3825326_-	NA	NA|3720aa|down_4|NC_015848.1_3825662_3836822_-	pfam00823, PPE, PPE family	NA|130aa|down_5|NC_015848.1_3838821_3839211_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_6|NC_015848.1_3839224_3839518_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_7|NC_015848.1_3839514_3840360_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_8|NC_015848.1_3840483_3840759_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_9|NC_015848.1_3840755_3841013_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	14	3814688-3814834	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGGAGTTGAACAACCCCCAGTTGCC	26	1	7	3814774-3814807|3814774-3814807|3814774-3814807|3814774-3814807|3814774-3814807|3814774-3814807|3814774-3814807	NC_015848.1_3812992-3813025|NC_015848.1_3818401-3818434|NC_015848.1_3820162-3820195|NC_015848.1_3826965-3826998|NC_015848.1_3834075-3834108|NC_015848.1_3816556-3816589|NC_015848.1_3830517-3830550	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_1|NC_015848.1_3825038_3825326_-	NA|290aa|up_9|NC_015848.1_3789429_3790299_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_8|NC_015848.1_3790319_3791330_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|274aa|up_7|NC_015848.1_3791426_3792248_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|410aa|up_6|NC_015848.1_3792314_3793544_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_5|NC_015848.1_3793826_3795176_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_4|NC_015848.1_3795187_3796327_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_3|NC_015848.1_3796323_3797055_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2539aa|up_2|NC_015848.1_3797063_3804680_-	pfam00823, PPE, PPE family	NA|2009aa|up_1|NC_015848.1_3804728_3810755_-	pfam00934, PE, PE family	NA|86aa|up_0|NC_015848.1_3811179_3811437_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|149aa|down_0|NC_015848.1_3823521_3823968_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|96aa|down_1|NC_015848.1_3825038_3825326_-	NA	NA|3720aa|down_2|NC_015848.1_3825662_3836822_-	pfam00823, PPE, PPE family	NA|130aa|down_3|NC_015848.1_3838821_3839211_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_4|NC_015848.1_3839224_3839518_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_5|NC_015848.1_3839514_3840360_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_6|NC_015848.1_3840483_3840759_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_7|NC_015848.1_3840755_3841013_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_8|NC_015848.1_3841054_3842245_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|123aa|down_9|NC_015848.1_3842361_3842730_+	pfam00498, FHA, FHA domain
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	15	3814904-3815037	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGGAGTTGAACAACCCCCAGTTGCC	26	1	1	3814990-3815011	NC_015848.1_3816772-3816793	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_1|NC_015848.1_3825038_3825326_-	NA|290aa|up_9|NC_015848.1_3789429_3790299_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_8|NC_015848.1_3790319_3791330_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|274aa|up_7|NC_015848.1_3791426_3792248_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|410aa|up_6|NC_015848.1_3792314_3793544_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_5|NC_015848.1_3793826_3795176_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_4|NC_015848.1_3795187_3796327_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_3|NC_015848.1_3796323_3797055_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2539aa|up_2|NC_015848.1_3797063_3804680_-	pfam00823, PPE, PPE family	NA|2009aa|up_1|NC_015848.1_3804728_3810755_-	pfam00934, PE, PE family	NA|86aa|up_0|NC_015848.1_3811179_3811437_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|149aa|down_0|NC_015848.1_3823521_3823968_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|96aa|down_1|NC_015848.1_3825038_3825326_-	NA	NA|3720aa|down_2|NC_015848.1_3825662_3836822_-	pfam00823, PPE, PPE family	NA|130aa|down_3|NC_015848.1_3838821_3839211_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_4|NC_015848.1_3839224_3839518_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_5|NC_015848.1_3839514_3840360_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_6|NC_015848.1_3840483_3840759_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_7|NC_015848.1_3840755_3841013_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_8|NC_015848.1_3841054_3842245_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|123aa|down_9|NC_015848.1_3842361_3842730_+	pfam00498, FHA, FHA domain
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	16	3909248-3909342	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCGCTGGGCTGGCTGCCGATGGAGGACAT	29	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|276aa|up_8|NC_015848.1_3900950_3901778_-,NA|238aa|down_2|NC_015848.1_3912415_3913129_-,NA|104aa|down_8|NC_015848.1_3918864_3919176_-	NA|213aa|up_9|NC_015848.1_3900294_3900933_-	PRK09648, PRK09648, RNA polymerase sigma factor ShbA	NA|276aa|up_8|NC_015848.1_3900950_3901778_-	NA	NA|103aa|up_7|NC_015848.1_3902148_3902457_+	pfam02467, Whib, Transcription factor WhiB	NA|540aa|up_6|NC_015848.1_3902528_3904148_-	PRK12849, groEL, chaperonin GroEL; Reviewed	NA|101aa|up_5|NC_015848.1_3904242_3904545_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|345aa|up_4|NC_015848.1_3904811_3905846_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|159aa|up_3|NC_015848.1_3905842_3906319_-	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|212aa|up_2|NC_015848.1_3906315_3906951_-	COG1214, COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|169aa|up_1|NC_015848.1_3906947_3907454_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|387aa|up_0|NC_015848.1_3907450_3908611_-	PRK00053, alr, alanine racemase; Reviewed	NA|462aa|down_0|NC_015848.1_3909569_3910955_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_1|NC_015848.1_3910992_3912414_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_2|NC_015848.1_3912415_3913129_-	NA	NA|285aa|down_3|NC_015848.1_3913139_3913994_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_4|NC_015848.1_3914214_3916089_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_5|NC_015848.1_3916113_3916590_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)	NA|281aa|down_6|NC_015848.1_3916599_3917442_+	pfam12740, Chlorophyllase2, Chlorophyllase enzyme	NA|467aa|down_7|NC_015848.1_3917461_3918862_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|104aa|down_8|NC_015848.1_3918864_3919176_-	NA	NA|449aa|down_9|NC_015848.1_3919223_3920570_-	PRK14318, glmM, phosphoglucosamine mutase; Provisional
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	17	4180236-4180324	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NC_015848.1_4171212_4171983_-,NA|233aa|up_0|NC_015848.1_4179340_4180039_-,NA|126aa|down_6|NC_015848.1_4185559_4185937_+	NA|388aa|up_9|NC_015848.1_4166825_4167989_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NC_015848.1_4167985_4169038_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NC_015848.1_4169536_4170400_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NC_015848.1_4171212_4171983_-	NA	NA|549aa|up_5|NC_015848.1_4171979_4173626_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NC_015848.1_4173622_4174486_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NC_015848.1_4174478_4175405_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NC_015848.1_4175406_4177032_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NC_015848.1_4177349_4179305_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NC_015848.1_4179340_4180039_-	NA	NA|173aa|down_0|NC_015848.1_4180384_4180903_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_015848.1_4180903_4181887_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_015848.1_4181879_4183073_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_015848.1_4183078_4183900_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|216aa|down_4|NC_015848.1_4184031_4184679_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_015848.1_4184714_4185452_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_015848.1_4185559_4185937_+	NA	NA|225aa|down_7|NC_015848.1_4186035_4186710_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_015848.1_4186813_4187608_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_015848.1_4187614_4188070_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	18	4226338-4226426	12	CRISPRCasFinder	no	DEDDh	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Unclear	CGGCGACAAGCGCCGAGCTTGCGATCGCCC	30	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|107aa|up_5|NC_015848.1_4219109_4219430_-,NA	NA|426aa|up_9|NC_015848.1_4215132_4216410_-	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|433aa|up_8|NC_015848.1_4216406_4217705_-	COG3572, GshA, Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	NA|215aa|up_7|NC_015848.1_4217836_4218481_-	pfam14032, PknH_C, PknH-like extracellular domain	NA|130aa|up_6|NC_015848.1_4218609_4218999_-	PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional	NA|107aa|up_5|NC_015848.1_4219109_4219430_-	NA	NA|383aa|up_4|NC_015848.1_4219547_4220696_-	pfam13810, DUF4185, Domain of unknown function (DUF4185)	NA|346aa|up_3|NC_015848.1_4220697_4221735_-	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|422aa|up_2|NC_015848.1_4221735_4223001_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|645aa|up_1|NC_015848.1_4223257_4225192_+	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated	DEDDh|330aa|up_0|NC_015848.1_4225257_4226247_-	PRK06063, PRK06063, DEDDh family exonuclease	NA|414aa|down_0|NC_015848.1_4226439_4227681_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|232aa|down_1|NC_015848.1_4227685_4228381_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|297aa|down_2|NC_015848.1_4228389_4229280_-	pfam18741, MTES_1575, REase_MTES_1575	NA|204aa|down_3|NC_015848.1_4229347_4229959_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|134aa|down_4|NC_015848.1_4229970_4230372_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|254aa|down_5|NC_015848.1_4230470_4231232_+	COG0860, AmiC, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|148aa|down_6|NC_015848.1_4231274_4231718_-	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport	NA|471aa|down_7|NC_015848.1_4231765_4233178_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|428aa|down_8|NC_015848.1_4233174_4234458_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|580aa|down_9|NC_015848.1_4234454_4236194_-	PRK14952, PRK14952, DNA polymerase III subunits gamma/tau
GCF_000253375.1_ASM25337v1	NC_015848	Mycobacterium canettii CIPT 140010059, complete genome	19	4456051-4456158	13	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CACCCCACCATCACCCCGCATCCC	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|102aa|up_4|NC_015848.1_4446108_4446414_-,NA|96aa|down_1|NC_015848.1_4457969_4458257_-,NA|170aa|down_6|NC_015848.1_4461618_4462128_-	NA|342aa|up_9|NC_015848.1_4442099_4443125_-	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|277aa|up_8|NC_015848.1_4443218_4444049_-	pfam14011, ESX-1_EspG, EspG family	NA|96aa|up_7|NC_015848.1_4444144_4444432_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|108aa|up_6|NC_015848.1_4444467_4444791_-	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|400aa|up_5|NC_015848.1_4444902_4446102_-	pfam00823, PPE, PPE family	NA|102aa|up_4|NC_015848.1_4446108_4446414_-	NA	NA|1397aa|up_3|NC_015848.1_4446680_4450871_-	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|496aa|up_2|NC_015848.1_4450871_4452359_-	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|303aa|up_1|NC_015848.1_4452361_4453270_-	COG3953, COG3953, SLT domain proteins [General function prediction only]	NA|330aa|up_0|NC_015848.1_4453420_4454410_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|161aa|down_0|NC_015848.1_4457584_4458067_-	PRK10893, PRK10893, LPS export ABC transporter periplasmic protein LptC	NA|96aa|down_1|NC_015848.1_4457969_4458257_-	NA	NA|86aa|down_2|NC_015848.1_4458411_4458669_-	pfam15567, Imm35, Immunity protein 35	NA|763aa|down_3|NC_015848.1_4458665_4460954_-	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|97aa|down_4|NC_015848.1_4460958_4461249_-	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|104aa|down_5|NC_015848.1_4461241_4461553_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|170aa|down_6|NC_015848.1_4461618_4462128_-	NA	NA|481aa|down_7|NC_015848.1_4462152_4463595_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|249aa|down_8|NC_015848.1_4463970_4464717_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|803aa|down_9|NC_015848.1_4464713_4467122_+	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau
