assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000260965.1_ASM26096v1	NC_017856	Methylophaga frappieri, complete sequence	1	123116-123192	1	CRISPRCasFinder	no		DinG,WYL,DEDDh,csa3,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,cas3,RT,PD-DExK	Orphan	CCATCTTTTTTCATGTCTTCGCCACA	26	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,DEDDh,csa3,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,cas3,RT,PD-DExK	NA,NA|203aa|down_9|NC_017856.1_133924_134533_-	NA|201aa|up_9|NC_017856.1_111138_111741_+	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN	NA|347aa|up_8|NC_017856.1_111750_112791_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|403aa|up_7|NC_017856.1_112817_114026_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|259aa|up_6|NC_017856.1_114074_114851_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|588aa|up_5|NC_017856.1_114930_116694_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|440aa|up_4|NC_017856.1_116690_118010_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|885aa|up_3|NC_017856.1_118012_120667_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|199aa|up_2|NC_017856.1_120818_121415_-	PRK05419, PRK05419, protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA|319aa|up_1|NC_017856.1_121425_122382_-	PRK05363, PRK05363, protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA|211aa|up_0|NC_017856.1_122371_123004_-	pfam07681, DoxX, DoxX	NA|204aa|down_0|NC_017856.1_123577_124189_+	PRK11922, PRK11922, RNA polymerase sigma factor; Provisional	NA|81aa|down_1|NC_017856.1_124189_124432_+	pfam13490, zf-HC2, Putative zinc-finger	NA|82aa|down_2|NC_017856.1_124432_124678_-	COG3492, COG3492, Uncharacterized protein conserved in bacteria [Function unknown]	NA|672aa|down_3|NC_017856.1_124670_126686_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|470aa|down_4|NC_017856.1_126682_128092_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|320aa|down_5|NC_017856.1_128103_129063_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|363aa|down_6|NC_017856.1_129059_130148_-	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism]	NA|360aa|down_7|NC_017856.1_130153_131233_-	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|860aa|down_8|NC_017856.1_131237_133817_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|203aa|down_9|NC_017856.1_133924_134533_-	NA
GCF_000260965.1_ASM26096v1	NC_017856	Methylophaga frappieri, complete sequence	2	1061651-1065770	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL	DinG,WYL,DEDDh,csa3,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,cas3,RT,PD-DExK	Type I-F	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	68,68,43	68	TypeI-F	DinG,WYL,DEDDh,csa3,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,cas3,RT,PD-DExK	NA|414aa|up_7|NC_017856.1_1052580_1053822_-,NA|135aa|up_6|NC_017856.1_1053920_1054325_-,NA	NA|212aa|up_9|NC_017856.1_1051241_1051877_-	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|212aa|up_8|NC_017856.1_1051885_1052521_-	cd16322, TTHA1623-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1623 and related proteins; MBL-fold metallo hydrolase domain	NA|414aa|up_7|NC_017856.1_1052580_1053822_-	NA	NA|135aa|up_6|NC_017856.1_1053920_1054325_-	NA	NA|100aa|up_5|NC_017856.1_1054469_1054769_+	pfam07238, PilZ, PilZ domain	NA|214aa|up_4|NC_017856.1_1054770_1055412_-	cd01042, DMQH, Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain	NA|358aa|up_3|NC_017856.1_1055415_1056489_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|314aa|up_2|NC_017856.1_1056608_1057550_-	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|723aa|up_1|NC_017856.1_1058015_1060184_+	PRK11642, PRK11642, ribonuclease R	NA|294aa|up_0|NC_017856.1_1060379_1061261_+	pfam08668, HDOD, HDOD domain	NA|50aa|down_0|NC_017856.1_1065982_1066132_-	pfam13744, HTH_37, Helix-turn-helix domain	cas6f|184aa|down_1|NC_017856.1_1066330_1066882_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|342aa|down_2|NC_017856.1_1066893_1067919_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|314aa|down_3|NC_017856.1_1067939_1068881_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|422aa|down_4|NC_017856.1_1068877_1070143_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3-cas2|1133aa|down_5|NC_017856.1_1070135_1073534_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|332aa|down_6|NC_017856.1_1073824_1074820_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|73aa|down_7|NC_017856.1_1074859_1075078_-	pfam08797, HIRAN, HIRAN domain	WYL|321aa|down_8|NC_017856.1_1075233_1076196_-	pfam13280, WYL, WYL domain	NA|205aa|down_9|NC_017856.1_1076390_1077005_+	cd04221, MauL, Methylamine utilization protein MauL
GCF_000260965.1_ASM26096v1	NC_017856	Methylophaga frappieri, complete sequence	3	1687674-1687848	3	CRISPRCasFinder	no		DinG,WYL,DEDDh,csa3,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,cas3,RT,PD-DExK	Orphan	TGACCAGTGTTGAGCGTTATATTCG	25	0	0	NA	NA	NA	3	3	Orphan	DinG,WYL,DEDDh,csa3,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,cas3,RT,PD-DExK	NA|372aa|up_7|NC_017856.1_1676652_1677768_+,NA|360aa|up_5|NC_017856.1_1680992_1682072_-,NA	NA|444aa|up_9|NC_017856.1_1673526_1674858_+	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional	NA|550aa|up_8|NC_017856.1_1674977_1676627_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|372aa|up_7|NC_017856.1_1676652_1677768_+	NA	NA|1040aa|up_6|NC_017856.1_1677825_1680945_-	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]	NA|360aa|up_5|NC_017856.1_1680992_1682072_-	NA	NA|397aa|up_4|NC_017856.1_1682635_1683826_+	pfam13609, Porin_4, Gram-negative porin	NA|211aa|up_3|NC_017856.1_1683962_1684595_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|330aa|up_2|NC_017856.1_1684598_1685588_-	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|281aa|up_1|NC_017856.1_1685599_1686442_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|214aa|up_0|NC_017856.1_1686638_1687280_+	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase	NA|328aa|down_0|NC_017856.1_1688008_1688992_+	PRK12309, PRK12309, transaldolase	NA|212aa|down_1|NC_017856.1_1689136_1689772_+	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase	NA|178aa|down_2|NC_017856.1_1689796_1690330_+	cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI)	NA|469aa|down_3|NC_017856.1_1690476_1691883_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|309aa|down_4|NC_017856.1_1691879_1692806_+	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|435aa|down_5|NC_017856.1_1692802_1694107_-	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|231aa|down_6|NC_017856.1_1694151_1694844_-	PRK05070, PRK05070, DNA mismatch repair protein; Provisional	NA|308aa|down_7|NC_017856.1_1694893_1695817_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|261aa|down_8|NC_017856.1_1695813_1696596_+	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|326aa|down_9|NC_017856.1_1696599_1697577_-	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA
